>input_sequence_85053
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-------------------ATGGGATCCTTGGGCCCTGCAGTGAGCGTGAGCATGGCCAAGGCCAACGGCGGCACGGCTG
CCGTCGGTGGCCAGAAGCAGCAGCAGAAG------CAGGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATACCGCTGCAC
TACCCGCGGTACAGGAAGGCGGACTACGAGGCGATGCCGGAATGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCC
TGTCACCGGCGACGTCGAGGAGAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCGGCCAGCATTGA----------
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>chr7B_1_TraesCS7B01G276200
GGATATATAGTTTCCGAATTTGCTAAAAAATCATCATAGTTTCAAAAAAAAATCCATACATATCCTCATGTTTTACATCC
CACATTCATCAAACACATAGATAGATCAATGCGCAC--------------------------TGCACACCAAAATCATGT
AACAGATGTGCCAAAACTCGCTTCTGAGAACAATCCCATCCATGTCTTTTTTTTCCCGCAAAAAAAAAAAAAAAAACAAT
CCCATCCATGTCTTTGTCCTCGGATCTGTAATTTCCGTGTACTAACACTTGCGATCTTGCGCGCAATGAACTTCCGGGAA
TCATCATACAAGGAATCAAGTAGTGAACAGATTGTTTACTGTAAAAGAAAAAAAAAC-----------------------
---------------------------------TAGTGGACAGATTTGGTCTACACCTTTG-------------------
----------------------------------------------CTTTCCAAGTGCCAAACTGCGTCCCAACAACCGA
AGGCTCGCAAAGAAATTCTTGGAGCACAGTTTCATGCCGCACAGGTAACCCCACACGGCCACCCATGACCCATCAATCAC
CGTCCCATGATCCTCGAAGCTTCTGTTCCTGCAGCCACGCCGGTGTGTGCAAGAGATCCAACTGGTAAGTCCATTGATCG
TTACCTCCTAATCATGCAGCTGGTCTGCAAGTGTT-GCCTCGTGTAGCCACATCCTTGATCAATCATGTGGGATGGCGT-
------------------GTGCTCCG-CTGACTCCGACAGCGACGCCGGCGCGAGCTAGGGGAGATGGACGCCCTGAGGT
CGACGGCGCTGCCTCACCGGCGAGGACGGAGCACGCTGTTGTCAGAATTTATTACTCTATTTGATTGCAAGTGCCCGATC
ATTCGGATCACCTGCAGTTCATTTCTTTCAGATAATGGTGGTTGGCTCGAGTTACCGCTCTGGTCAGGCAAGACGGTGGA
TT-----------------------------ATTATTCCTCTATCTCAC-ACCATCTATAAAA-CCCTTCCATCAGCTAG
CACTTCCTTCTCAACGAACAC--GAGTTGCTTGTAATTTATAAGGTGATCAGAGGCAGCAAAGAA------------ACA
CAC----ACAG--AGAGAGATGGGATCCTTGGGCCCTGCAGTGAGCGTGAGCATGGCCAAGGCCAACGGCGGCACGGCTG
CCGTCGGTGGCCAGAAGCAGCAGCAGAAG------CAGGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATACCGCTGCAC
TACCCGCGGTACAGGAAGGCGGACTACGAGGCGATGCCGGAATGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCC
TGTCACCGGCGACGTCGAGGAGAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCGGCCAGCATTGATTCGCCTTT-
----------TTACATATTGCCACTCGGAGCAGAGGCCGATCAGCAAGCTAGGGCCTAGCAGAGACTGATCAGCAATGGC
AGCAGCAGCCTCACGT----CC------CCATGTATGCAGAAGAC-----CTCGTGCCGATATTATATTCC---------
TATC---------------------------------------------TATCA-CTAATC-------------------
------------ATAATCTCCAATTATCCATAGAAAAAATAT---GTTTCTTGGAGGTTGGAGCAGTTCTGATGTTC---
---TTACATGTAAGCAGTACTGGAAGAAGGTGTTGTTTCTGATTT-TCATACGTATAATATAATGCTTTCTGTG---TAC
GTCCGACGTTGATCGTTTTGCTCTGCAGTTCTGAGCTTTGTTTGAGGCGTGTCTTCTGAAAGTGTGTTTGGTTCTCTAGC
TAAACATGCCCAGCCAGGCAATAGGATTCTAGCTCACTCTAGGCATAGCTCATACAAGCAAGGCCACTTGTTTGGTTCAT
TTGCCTAGCCTCCACTAAACCACGATTACAGCGGCAGTTACATGCTTAATATGCTTGTGTTCAATTCTTGCCGATGGAGA
CGAGCCAAATCGGCTCTCCTGTCCGGGCAAGGATTTTCTAGCTCACGCAGGCTAGTTTGCTAGGCAAAGCTAGCTTTTTT
CTACTCCTCCAAACAACTATGCTGGCTGGGCGAGGCTAGAGTAAGGCTTGCTTGAGATCCAAACGCACCCTCAGACTCTT
TTGGTTCATACGACAGGAATGTCATAACAATAGAAGAGGGACAGTAATATCCCAGCCCTTCAGGGTTAAGTCCTGGTGCT
CACATTATCCCTGAATTTATTTTAGGATTTCCGGCGATGCGTTTTTAGTGGGAGAAGACGTTCCCGTCGACGACGAAGCG
CCTATGGTGACTTTGTAAATTTCAAGATGACATGCCGGCTCAGTCTCTCGAAGGTGCTCATAGGGGTTGGGTGTGCGTGT
GTACGTTCATAGGGATGAGTGTATGCGTGTATGAGCGCTTGCATCTGTACTGATGTTAAAATAAAATAAAAAATT
>chr7D_55
------------------------------------------------------CATACATATCCTCATGTTTTGCATCC
CACATTCATCAAACACATAGATAGATCAATGCGCACAATCCCTTTTCTTTTTGCAAGGAAAATGCACACTATAATCATGT
AACAGATGTGCCAAAACTTGCTTTTGAG----------------------------------------------AACAAT
CCCATCCATGTCTTTGTCCTCAGATCTGTAGTTTCGGTGTACTAACACTTGCGATCTTGCGC------------------
-------------------CTAGTGAACAGATTTTTTACTGTAAAAGAAAAAAAACTAGTGGACAGATTTTTTTTTTGAA
TTGTTTGGATTGCTTACCACATGTTTCATGTGGTAGTGGACAGATTTGGTCTACACCTTTG-------------------
----------------------------------------------C---------------------------------
---------------------------------ATGCCGCACAGGTAACTCTACACGGCCACCCATGACCCATCAATCAC
CATCCCATGATCCTCGAAGCTTCTGTTCCTGCAGCCACGCCGTCGCGTGCAAGAGATCCAACTGGTAAGTCCATTAATCG
TTACCTCCTAATCATGCAGCTGGTCTGCAAGTGTTTGCTTCGTGTAGCCACATCCTTGATCAATCATGTGGGATAGCGTA
GGATCGATCGTGTGGCGTGTGCTCCG-CTGACTCCGACAGCGACGCCGGCGAGAGCTAGGGA--GTGGACGCCCTGAGGT
CGACGGCGCTGCCTCACCGGCGAGGACGGAGCACGCTGTTGTCAGAATTTATTACTCTGCTTGATTGCACA---------
-----------CTGCAGTTCATTTCTTTCAGATAATG-TGGTTGGCTCGAGTTACCGCTCTGGTCAGGCAAGACGGTGGA
TT-----------------------------ATTATTCCTCTATCTCAC-ACCATCTATAAAA-CCCTTCCATCAGCTAG
CACTTCCTTCTCAACGAACAC--GAGTTGCTTGTAATTTACAAGGTGATCAGAGGCAGCAAAGAA------------ACA
CACACACACAC--ACAGAGATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGGCCAACGGCGGCACGGCTG
CCGTCGGTGGCCAGAAGCAGCAGCGGAAG------CCGGAGCGCGGCACGTTCAGCTGCGGCTTCCAGATGCCTCTGCAC
TACCCGCGGTATAGGAAAGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCC
TGTCACCGGCGACGTCGAGGAGAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCGGCCAGTATTGATTCGCCCTC-
----------TTACATATTGCCACTTGGAGCAGAGGCCGATCAGCGAGTGAGCGCCTAGTAGAGACTGATCAGCAATGGC
AGCAGCAACATCACGT----CC------CCATGTATGAAGAAGAC-----ATCGTGTCCATATTATTTTATCTACTCTCT
CCGTAAATTAATATAGGAGTGTTTATATCATTAAAGTTTACGGAGGGCGTATCATCTATCATAATCTCCAACCCCCCATA
GACAAATACAGTATAATCTCCAATTCTCCATAGACAAATATTTTC------------TTGGAGCAGTTCTGATGTGCCTA
CGTTTACGTGTAAGCAG---TGGAAGAATGTGTTTTTTTTATCTTCTTATACATGTAAATTAATGCTTTCTGTG---TAC
GTCCGACGTTGATT-TTTTGCTGTGCAGTTGTGA----------------------------------------------
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>chr7A_306
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-----------GGAATCAACTCGCGAACATATTTTTTACTGTAAAAAAAAAA----C-----------------------
---------------------------------TAGTGAACAGATTTGGTCTACACTTTGCTCTCCGAGTGCCAAACTGC
GTCCCAACAACCGAGGGCTCGCAAAGAAATTCTTCTAACACAGTTCC---------------------------------
---------------------------------ATGCCGCGCAGGTAACCCTACACGGCCACCCATGACCCATCAATCGC
CGCCCCAAGATCCTCGAAGCTTCTGTTCCTGCAGCCACACCGTTACGTGCAAGTGATCCAACTGGTAAATCCATTAATTG
TTACCTCCTAATCATGCAGCTAGTCTGCAAGTGTT-GCTTCGTGTAGCCACATCCTCGATCAATCATGTGGGATAGCGTA
TGATCGATCGTGTGGCGTGTGCTCGGCCTGACTCCGACAGCGACGCCGGCGCGAGGTAGGGGAGGTGGATGCCCTGAGGT
CGACGACGCTGCCTTACCGGCGAGGACGGAGCACGCTGCTGTTGGAATTTATTGCTTCACTGCGTTGCTGGAGCACGCTC
CAACATTTGCTGTGTCA--------------ATGATT-TGGTTGGCGATTCGACTAGACATCGATCTATCGGTTGCACCA
GGAAAGGTCTAGAGTTTTATGAGTCTGATTGATTATTCCTCCATCTCAC-ACCATCTATAAAA-CATTTCCATCAGCTAG
CACTTCCTTCTTAACAACACCAAGAGTTGCTTGCAAGTTACAAGGTGATGAGAGGCAGCAAGGAAACACAAACACACACA
CGC----ACAC--AGAGACATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGGCCAACGGCGGCAAGGTGG
CCGTCGGCGGCCAGAAGCAGCAGCAGA---------------GCGGCACGTTCAGCTGCGGCTTCCAGATGCCGCTGCAC
TACCCGCGGTACAGGAAGGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCC
TGTCACAGGCGACATCGAGGAAAAGAGGAGGTTCGCCATGGGCGCCTTGCTCTGGCCCGGCCAGTATTGATTCACCTTGT
TACATGAGTATTACATATTTCCATTCGGAGCAGAGGCCGATCAGCAAGCTACCGCCTAGCAGAGACTGATCAGCAATGGC
AGCAGCAACATCACGT----CTCCATGACCATGTATGAAGAAGAC-----CTCGCGATATTATATTTCTATCTATATCTA
TATC---------------------------------------------TATATCT------------------------
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>chr7B_876
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--------------------------------TTATTCCTCTACCACATTTCCATCTATAAAAGCCCTTCCAGCCTCTGG
CACTCCCTTCTCAGCCACAACTCCAGTTGCTTGGAAGTTACAAGGCGTTCAGAGGCAGCAACCGA---------------
---ACACACACCCACAGACATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGG------------------
CCGTCGGCGGCCAGCAGCAGCAGC---AG------CCGGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATGCCGCTGCAC
TACCCGCGGTACAGGAAGACGGACTACGAGGAGATGCCGGAGTGGCGCATCGACTGCCTGCTCCGGGAGTACGGCCTCCC
CGTCGCCGGCGACGTCGAGGACAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCAGCCAGTATTGACTCTCCTTCT
TACATC-----------TCGCCACTCGGAGCAGAGGCCGGTCAGCGAGCCAGCGCCTGGCAGAGACTGACCAGCAATGGC
AGCAGCAACATCACGTACATCC------CCATGTATGAAGAAGAC-----CTCGTGAGGATATTT-ATATTCT-----TA
TATC---------------------------------------------TATCATCTAATC-------------------
------------GTAATCTCCAATTCTCCATACAGAATATATCATGTTTCTTGGAG------------------------
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>chr7D_876
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--------------------------------TTATTCCTCTACCACATTTCGATCTATAAAAGCCCTTCCAGCCTCTGG
CACTCCCTTCTCAGCCACAGCTCCAGTTGCTTGGAAGTTACAAGGCGTTCAGAGGCGGCAACCAA---------------
---ACCTACACACATACACATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGGCCAGCGGCGGCACGGCGG
CCGTCGGCGGCCAGC------------AG------CCGGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATGCCGCTGCAC
TACCCGCGGTACAGGAAGGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCC
CGTCGCCGGCGACGTCGAGGACAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCAGCCAGTATTGACTCTCCTTCT
TACATC-----------TCGCCACTCGGAGCAGAGGCCGGTCAGCGAGCCAGCGCCTGGCAGAGACTGATCAGCAGTGGC
AGCAGCATCAACATC-ACGTCC------CCATGTATGAAGAAGACGAGATCTCGTGACAATATTACATATTCT-----TA
T----------------------------------------------CGTATCATCTAATCGTATCTCCAATCCCCCATA
GAGAAT------------------------------ATATATCATGTTTCTTGGAG------------------------
----TATATGTAAGCAG---TGGAAGAAGGGGTTGTTTCTGATAT-TCATACGTGAAATGTAGGGCTTCGTATGTACTAC
GTGTGACCTTGATCGTTTTGCTCTGAAGTTCTG-----------------------------------------------
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>chr7A_877
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---------------------------------TATTTCTCTACCACAC-TCCATCTATAAAAGCCCTTCCAGCCTCTTG
CACTCCCTTCTCAGCCGCAGCTCCAGTTGCTTGCAAGTTACAAGGCGTTCAGAGGGGGCAACCAA---------------
---ACACACAG--ACAGACATGGGATCCTTGGGCCCTGCCGTGAACGTGAGCATGGCCAAGGCCAGCGGCGGCACGGCGG
CCGTCGGCGGCCAGC------------AGCAGCAGCAGGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATGCCGCTGCAC
TACCCGCGGTACAGGAAGGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGGGAGTACGGCCTCCC
CGTCGCCGGCGACGTCGAGGACAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCAGCCAGTACTGATTCGCCTTCT
TACGTC-----------TTGCCACTCGGAGCAGAGGCCGGTCAGCAAGCTAGCGCCGAGCAGAGACTGATCAGCAATGGC
AGCAGAAAGATCACGTACGTCC------CCATGTATGAAGA---------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S-----
---------------------------------------------------------------------S-S--------
------------------S----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
---------------------S--------S----S--------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--------S-------------S---------------------S------------------------
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-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S----------------------------
------------------------------------------S--S-----------------------------S----
--------------------------------------S-----------------------------------S-----
----------------------------------------------------------------S---------------
-----------------------------------------------------------S---------S-S--S--S--
SSS-SSS-SSS--------------------------S------------------------------------------
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----------------------------------------S---------------------------------------
---------------------------------------S----------------------------------------
----------------------------------------------------------------------S---------
-----------------------------------------S--------------------------------------
----------------------------------------------------------------S-------------S-
----------------------------------------------------S---------------------------
-------S-S---------------------------S------------------S------------SS---------
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-------------------------S--------S---------------------S------------------S----
-----------------SSS----------------------------------S----S--------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_312
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----------------------------------------------------GATCTTGCGCGCAATGAACT--------
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>reverse_2300
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-----------------------------------------------------------CAAACGCACCCTCAGACTCT-
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