>input_sequence_85045
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--------------------------------------ATGAGGAGATCCTCCCAGCAGCACTCCTTGCTCCCCTGCATC
CTCCTCCT---CATGCTCCTCG---CCATGTCACACCTGCCGAGCTCGAGCCATGGCTTGAGAACGCTGAGGGAGGAAGA
AGAAGCGGTCGGCGAGCTCATCAAAGGCCAGCATGAGCTCCCCCCGACCATCTCCCCTACTCAAGAAGCAGGCGGCGACG
ACGTTGCCGCCGCCGACGACATCGGCGCCGGGAAGTTCACCGTCTCGAGGAGAGCGGTTCCTCAGGGGCCCAACCCTCTG
CACAACTGA-----------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G393000
GCCTTGCACTATTTAGATTTAGATTACTGGGCACCTACCCTGTTTGTGTCTGGATTCCCACCAGGTGTGGGGTCTACGCT
GTTGGGGAATCTGCTGCTGCTGCTAATTAAGCTTGAGCTACCACCATGCATGCACTGAGAGTCCAATGGTAGGGGACATT
TCCTTTCACCCTATTAGATAGATGGATGAAC----------------------------AGATAACTTGTGTCTATAACC
TAAGGCATGGGGCTCCTGCTAATTAAGAAATCAAGCTTGAGCCTTGAGCTACTGCCATGCTCTGAAAGTCTAATGGTG--
--GGAGACATCTCCATTCACCCTACAGATGACTTGTGCCTATGGCCAAGGGCATGGGGTTCCTGTTGTCAGGGCCATTGG
TTTCCTTTGGTTGCTTGGCTGAGCAGGCTAACATGACGGCACGGAGGACTTGCTGCCACAAGCAGCCAAGGTTGTCAATG
GCCCCTGCTCAGC-----CCAGCCATTTTTCTATGCACCATGAGTTTCATGT---ACATATCTTTACTTTCTATATATAT
GC--------ATGTAGCCTAAAGTGCTTTTATTCTCAGAAATCT--------TAGCACCTGCTCCCCTTACTAGATCACC
AAGTCCATGGACGAGACACTTGGAAGATACTAAAGAGAGATATCCCATATCTGGTCAGTAGGATTAGCCATGCCCATGCA
TGCTTTTCTCCTAACCATGGCAGGCAGG--------TCCCATGCCCAGGCTCTGGTCTCCATATCCAAGAAATTCAGGAA
ACATGGATT--TTCTTTGCTGGGGGGAATCGGTGGGCCCCACATGCCAAACTTTTAGTGAACCGAACACATTACCAT--A
CCATGTAGTCAGAGTCAGTGGAGTACTAC---TACTACTATAGGCCATATATAGGATGGAGGATGGAGGATCGCTCAGTG
TCTATTTCTTGTTACCTGTGTCTCCTCTTATTAGTGGCCTCTCTCCCCCAGCT---AAATCCATATTAATACCCTCCTCC
TCCCCTGCTCCTCTCTCTCTCC----CTCTCTCATGCCATGAGGAGATCCTCCCAGCAGCACTCCTTGCTCCCCTGCATC
CTCCTCCT---CATGCTCCTCG---CCATGTCACACCTGCCGAGCTCGAGCCATGGCTTGAGAACGCTGAGGGAGGAAGA
AGAAGCGGTCGGCGAGCTCATCAAAGGCCAGCATGAGCTCCCCCCGACCATCTCCCCTACTCAAGAAGCAGGCGGCGACG
ACGTTGCCGCCGCCGACGACATCGGCGCCGGGAAGTTCACCGTCTCGAGGAGAGCGGTTCCTCAGGGGCCCAACCCTCTG
CACAACTGACGAGGATCAACGCAGGGTCACGAGGATCGTCGGCATCAGCTCCGGTGGATCTCTGCAGCAGG---------
--CACCATGGCCACCAGATACATATACTATACCCTT---TTTTTTTGTCCTCCCCCCATTA-TTTTTTTAGCTGGCTAGC
CTAGAAAGATGATAATACGGTACAGACAGGCCGTAGTACCACCATTGATGTATGTATGTATGCTCATCAATACCTGTGGG
CTGTGTGTGTGTGTGGCTCCCTCCCTCCATTCCTG---------CTTCCTTGCATGATTAGCTACAGCCCTCGTGTACAT
ATGCAGTGATTGATGTGGCCAAGGCGTGATAGTTTGTTGGTTAAGCATTTACGTACGTACTCCCTCCGATCCATAATAAG
TGTCGTGGTTTTGAACTAAGGTTGGATTAAGCTTAGTTCAGAACCGCGACACTTATTTTGG-------------------
---------------------------ATCGAAGGGACGGAGTACTAAATAGCAGTGTCTTTACAATCGTGTA-GTTGAG
TAGGATCTAAAATGCTGAGATGTTGTTGCTGTTCTTCTTTTTCTTTTTTGCCTTATCTGAAGAAATTAAGTAAGCTGTTT
TTTGGCCAGTG------ATATCTTGTGGTTGTTGGAGGGCTCCCATCTAGGAGTAGTAGAGTGGTATCTGCTGATCTATA
AAGCAG---AGTCATGAGGCGCATGTGAA----TGCTTAATCAACCCCGTGAGCGGAGCAGGTGTTAATTACTTAATCAC
GGGCTGATTAAGGCGCCTCCTCTCCTTTTTCTTGTAAATATTTTGGGAGCAATCTTTTTCGAGA--GATGGACTGGCTGA
AGCAAAGCAGAGTAAAT---------------------------------------------------------------
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--------AAATAAATAAAATGTCTGCAGCTGGCTGTACGATTTTATTTTATATTTAATTTTTGGGTGATTCAGCTGGGC
TGGCTGTACGTGGGTTGGGTCGCCGTGTCAGCGATGTCCCCGGAGCCGGAGCCGCAG---------------GACGTACA
GGTGATTAGGTGACGGTGGTCGGTGG--TGGACTCGCAGACACATGCGATTAGCAGCTGGAGT
>chr6A_1
GCCTTGCACTATTTAGATTTAGATTACTGGGCACCTACCCTGTTTGTGTCTGGATTCCCACCAGGCGTGGGGTCTACGCT
GCTGGGGAATCTACTGCTGCTGCTAATTAAGCTTGAGCTACCACCATGCATGCACTGAAAGTCTAATGTGAGGGGACATT
TCCTCTCACCCTATTATATTTATTTATTTTGAAAAGTTCACCCTATTAGATAGATAGATAGATAACTTGTGTCTATGACC
AAAGGCATGGGGCTCCTGCTAATTAAGAAATCAAGCTTGAGCCTTGAGCTACTGCCATGCTCTGAAAGTCTAATGGTG--
--GGAGACATCTCCATTCACCCTATAGTTAACTTGTGTCTATAACCAAGGGCATGGGGCTCCTGTTGACAGGGCCATTGG
TTTCCTTTGGTTGCTTGCCTGGGCAGGCTAACATGATGGCATGGAGGACTTGCTGCCACAAGCAGCCAAGGTTGTCAATG
GCCCCTGCTCAGCCCAGCCCAGCCATTTTTCTAAGCACCATGAGTTTCATGT---ACATATTTTTACTTTCTATATATAT
GC--------ATGTAGCCTAAAGTGCACTGCTTTTCCTCAAAGAAACCTTGCTAGCACCTGCTCCCCTTTCTAGATCACC
AAGTCCATGGATGGGACACTTGGAAGATACTAAAGAGAGATATCCCATATCTGGTCAGTAGGATTAGCCATGCCCATGCA
TGCTTTTCCCCTAACCAT----GGATGGCAGGTGGATCCCATGCCCAGGCTCTGGTCTCCATATCCAAGAAATTCAGGAA
ACATGGGTT--TTCTTTCCTGGGGGGAATCAGTGGGCCCCACATGCCAAACTTTTAGTGAACCAAACACATTACCAT--A
CCATGTAGTCAGAGTCACTGGAGTACTACTGCTACTACTATAGGCCATATATAGGATGGAGGATGGAGGATCACTCGGTG
TCCATTTCTTGTTACCTGTGTCTCCTCTTATTAGTGGCCTCTCTCCCCCAGCTGCTAAATCCATATTAATACCCTCCTCC
TCCCCTGCTCCTCTCTCTCTCTCCCTCTCTCTCATGCCATGAGGAGATCCTCCCAGCAGCACTCCTTGCTCCCCTGCATC
ATCCTCCT---CCTGCTCCTTGTTTCCATGTCATGCTTGCCGAGCTCGAGCCATGGCCTGAGAACGCTGAGGGAGGAAGA
AGAAGCGGTCGGTGAGCTCATCAAAGGCCAGCATGAGCTTCCCCCAACCATCTCCCCTACTCAACAAGCAGGCGGCGATG
ACGTTGCGGCCGCCAACGACATCGGTGCCGGGAAGTTCACCGTCTCGAGGAGAGCGGTTCCTCAGGGGCCCAACCCTCTG
CACAACTGACGAGGA--------------------TCGCCGCCATCGGCGCCGGTGGATCTCTGCATCAGGTTCATGGCG
CTCACCATGGCCACCAGATACATATACAGTACTATACCCTTTTTTTGTCCTCCCCCCATTT-TTTT---AGCTGGCTAGC
CTAGAAAGATGATAATACGGTACAGACAGGCC---GTACCACCATTGATGTGTGT--------TCATCAATACCC-----
------------GTGGCTCCCTCCCTCCCTCCATGGCATGCTTCCTTCCCTGCATGATTAGCTGTATCTCTTGTGTATAT
ATGCAGTGATTGATGTTACAAAGACTTGAAAG-TTGTTGGTCGAGCATTTACATGC-TGCTCCCTCTGTACACTAATGTA
AGACGTTTTTCCCGTTCAAATTGAACCGCAAAAAACGTTTTATATTAGCGTACAAAGGTATAAGAGCGTTTTTCAGACTA
GTATAGTGTCAAAAACGTTATTATATTATAGAACGGAGGGAGTAGTACATAGTAGGGGCGCCTTTGTAATCACGGTTGCA
TGGGATCTGAAATTCTGAAATGGTATTGTTGTTGC----------TTTTTCGTTGTGTGAAGAAATTAATTAAGCTGTTT
TTTGGGGCTGTGATATAATATCTCGTGGTTGTTGGAGAGCTCCCATCTAGTA-----------GTATCTGCTGATCTATA
AAGAGGAGCAGTCTGGAGGCGCATGTGAATGCTTGCTTAATCAACCCCGTGAT-----CAGGTGCTGATTAACTAATCAC
GGGTTGATTAAGGCGCCTCCTCTCCTTTTTCTTGCAAATATTCTG---GCCATCTTTTCAGAGACGGACGGACCGACTGA
AGCAAAGCAGAGTAAGGGCTCCTTTGATTCAAAGAAATCGCATAGGATTTTTTGGAGGGTTTGAACTCTTAGGAATTTTT
TCATGTTATGCTCGTTTGATTCGTAGGATTGGCATCTTTAGGAATTTTTCTATAGGATCCATTTGTACTACATTTTAGAG
AAAAATTTCCATTCACTCAAATCTCTTTGTAGAATGCCTTTGTTTTTCCTGCGCTATCAAACATTCTTTCAAGTCCTGTA
GGATATTATGGGACATGCCATCCTATTCCTGCATTTTTCCTATTCCTTTATTTCGACAATCCTACGAATCAAAGAGGCCT
TAATAAAGAAATAAATAAAATGTCTGCAGCTGGCTGTGCGAATTTATTTTTTTGG--------GGGTGATTCAGCTGGGC
TGGCTGTA-----GTTGGGTGAGCGTGTCAGCGATGTCCCCGGAGGACAGGACGTAACGCGGCCGGCGATGAGACGTACA
GGTGACTAGGTGACGGTGGTCGGTGGACTGGACTCGCAAACACACGCGATTA-----------
>chr6B_1
GCCTTGCACTATTTAGATTTAGATTACTGGGCACCTACCCTGTTTGTGTCCGGATTCCCACCAGGTGTAGGGTCCACGCT
GCTGGGGAATCTACTGCTGCTGCTAATTAAGCTTGAGCTACCGCCATGCATGCACTGAAAGTTTAATGGTAGGAGACATC
TCCTTTCACCCTATTAGATTTATTT-TTTTGAAAAGTTCACCCTATTAGATA--TAGATAGATAACTTGTGTCTGTGACC
TAAGGCATGGGGTTCCTGCTAATTAATCAATTAAGCTTGAGCCTTGAGCTACTGCCATGCTCTGAAAGTCTAATGAAGGG
TAGGAGACATCTCCATTCACCCTACAGTTAACTTGTGCCTATGACCAAGGGCATGGGGTTCCTGTTGACAGGGCCATTGG
TTCCCTTTGGTTGCTTGGCTGGGCAGGATAACATAATGGCATGGAGGACTTGCTGCCACAAGCAGCCAAGGTTGTCGATG
GCCCCCTGCACT----GCCCTGCCATTTTTCTATGCACCATGAGTTTCATGTAGTACATATCTTTTCTTTCTAGACTAGA
TATGTAGTTTATGTAGCCTAAAGTGCACTGCTTTTCCTCGCGGAAACCTTGCTAGCACCTGCTCCCCTTTCTAGATCGCC
AAGTCCATGGATGGGACACTT-GAAGATACCAAAGAGAGATATCCCATATCTGGTCAGTAGGATTAGCCATGCCCATGCA
TGCTTTTCTCCTAACCAT----GGCAGG--------TCCCATGCCCA-GCTCTGGTCTCCATATCCAAGAAATTCAGGAA
ACAAGGATTTTTTCTTTGCTGTGGGG-----------CCCACATGCCAAGATTTTAGTGAGCCAAACACATTGCCATACA
CCATGTAGTCAGAGTCAGTGGAGTACC---------ACTATAGGCCATACTATAT----AGGATGGAGGATCACTCGGTG
TCTATTTCTTGTTACCTGTGTCTCCTCTTATTAGTGGCCTCTCTCTCCCAGCTGCTAAATCCATATTAATACCCTCCTCC
TCCCCTGCTCCTCTCTCTGTCTCTGCG--TCTCATGCCATGAGGAGGCCCTCCCAGCAGCACTCCTTGCTCCCCTGCATC
CTCCTCCTCCTCCTGCTCCTTGTTTCCATGTCACACCTGCCGAGCTCGAGCCATGGCTTGAGAACGCTGAGGGAGGAAGA
AGAAGCGGTCGGTGAGCTCATCACAGGCCAGCATGAGCTTCCCCCAACCATCTCCCCTACTCAAGAAGCAGGCGGCGACG
ACGTTGCCGCTGCCGACGACATCGGCGCCGGGAAGTTCACCGTGTCGAGGAGAGCGGTTCCTCAGGGGCCCAACCCTCTG
CACAACTGACGAGGA-----------------GGATCGACGCCATCGGCTCCGGCGGATCTCTGCAGCAGGTTCATGGCC
CTCACCATGGCCACCAGATACATATACTATACCCTT---TTTTTTTGGT---CCCCCATTATTTTTTTTAGCTGGCTAGG
CTAGAAAGATGATAATACGGTACAGACAGGCCGTAGTACCACCATTGATGTGTGTGTGT---------------------
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>SNPs
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-S----------S---------------------------------------------S----S----------------
-------------------SS--SS--SSSS---------------------------------------------S---
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---------------------------S-S-------------S-----------------------S------------
---------------------S--------------S----S--------------------------------------
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--------------------------SS-SS--S--SSS--SSS-------------------------S----------
-----------S-S------------------------------------------------------------------
------------------SSSS----------------------------------------------------------
------------------------------S--------------------------------S----------------
------------------------------------------------------------------------S---S---
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---------------------S----------------------------------------------------------
------------S-------S-----------------------------------------------------------
------------S--------------------------S-----S----------------------------------
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---------------SSSSSSSSSSSSSSSSS------S--S----S---------------------------------
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---------------------------------------------------S---S---SSSS-----------SSSSSS
SSSSSSSSSSSS----------------S-S-S----------------S-------------SS-S-S--S-----S--
----------------SS-S---S-S---S--S--------SS---------S-S-S-S-------S-SS-SS----SSS
S-S---SS--SSSSSSS--SS-SSSSSSS-SSSS-SS-SSS-SSSSS-SSSSSS-SSS-SS-------------------
-----------------------------S---S---S------S--S----S--S-S-SSSSSSS-SS-SSS-----SS
-S------S----S----S---S-S---S----SSSSSSSSSSSS----S-S--S-S------------S----------
-----SSSSSS------------S-------------S------------S-SSSSSSSSSSS-----------------
---SS--------SS-------------------------------------SSSSSS------S-S----SS-------
---S------------------------------S-------S--SSS--S-------SS--------S----S-S----
---------------SS---------------------------------------------------------------
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-------------------------------------S---S--------S-SSSSSSSSSSS-----------------
--------SSSSS-------SSS----------------------SSSSS-S--S-S-----------------------
-----S--------------------------------S-----S-------SSSSSSSSSSS
>forward_422
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--TCCTTTGGTTGCTTGGCTGA----------------------------------------------------------
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>reverse_2219
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----------------------------------------------------------TCGAGAGATGGACTGGCTGA--
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