>input_sequence_85038
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-----------------------------------------------ATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAG
GCGCTCGCCAACGGCACGGCGGTGGCGCCCGAGAGGAAGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAGCGCAACCA
CGCCGCCGGCATCGGCGGGTACGCCGTGGACGGCTGCCGCGAGTTCATGGCGTCCGCCCCCGCGGGCGCCGAGGCGCTCC
TCTGCGCGGCGTGCGGCTGCCACCGCAGCTTCCACAAGCGCGAGGTGGAGGCCGTCGACTGCGACTGCTCCTCCGACACC
TCCGGCCGGTGA--------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G149400
TGCATGTGGACACACACACGGGCGACTGTGAGAGCGCCACGTGACACGGGGTGTCCCACACGTCAGTAACAGCGACAGCT
AGCAATCAACTCTCTTGATCAACGACAAACACCTGTTTGGGCATTGGTGAGGGTGAGCGGCACGATG-AGGGGAAAAGTG
AGCAAAGTTAGTTTGCCCAGGCAAAACTGAGCACAACTTTGTAACCAGGGCACAAAAATAGAAAACCCTTTTATTAAATT
ATTCAACAGAGTACGAGAACACAAATACATAGATCAACCCAAAGCCATCTTTCTCGCGATCTCCGTCACCAACCCTGTAA
GGTTGATGATGTGTCGTGACCTCGCATCAACCCACTTCGTCTAATCGAGTAGCCTCACCAAGCCGCCCCACAGTGAGTTG
AGAGCATCATCCGGTCTAGCATATCCTCACCGCTCTAGAATCCATCGCCTCCATCTTCCGTCGTCCCAATTTCAAAAGAG
ATCAAAGCAATGGCCTTGACAGGCCCAATTTTAGTCGACGTCACAATGACACCAGACAACGCCGCCGTTCTACGCACGTC
CATCATAGAATTTACCAATTACAA-AAAAAACATGAAAATATCAACACGACAAATGGCTACACGAATCATGGCGCCAACC
GGTTACGTAAACAA------------------------------------------------------------------
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--------GAAATGAATCCAGACCACACACGATACCATCGTGTGGACCGAATGCTCGCCCCAAATTAACCAGGTGCTCCG
ACGCATGATCCTAAAACAAGAACACTG-------TGGTGCCCATTCTTGTAACCTTGCGAGACTCCTTTTT-CTCCTAAC
GCAATTACACGCAAAGCTTTTGCGTGCCCGCGGAAAAGAAATGGAGAAAACCATCACCCCTCCCTCTCGTGCTCCTGCCC
ATATAAGTACCAGCATCCAAGGCCGCGATAGCAAAAGCCTTCCCACTCCCTTCCCTTCCATCCCAGACGCCCATAGCCC-
--CGACGGCCGCCGGCCGGCAAGAAGGCGTCGTCCGCACCGTCGCCCATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAG
GCGCTCGCCAACGGCACGGCGGTGGCGCCCGAGAGGAAGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAGCGCAACCA
CGCCGCCGGCATCGGCGGGTACGCCGTGGACGGCTGCCGCGAGTTCATGGCGTCCGCCCCCGCGGGCGCCGAGGCGCTCC
TCTGCGCGGCGTGCGGCTGCCACCGCAGCTTCCACAAGCGCGAGGTGGAGGCCGTCGACTGCGACTGCTCCTCCGACACC
TCCGGCCGGTGATCGCCGCCG-CCCGTCGCTGCCCAAGCCTGCTGTTCTCTTGCTGGCTCGTC-CGGGTAGACCGGCATC
----GGCAGGTAAGGCGTGGTGGACGTTGAGATGACTCCATTCGATCTCGATCGATCTATCAATCAAATACATATATATG
GCCCGGTTAATTTATCTTCTTCCTCCTCCTCT------TCCTGGTATTGGGATTAATTTGGTGCTCGATTGTGTGTGATG
TAATTAACATATCCGTACGTGTAGCATATGCGTGTTGATGAGAATCCAAACTGGTGCGTGTGT----AGATCGATCGGTG
AGATGAACATGTTGTAATTTGTACAGATTTGTGCTTCTTGTTTGGAACCAGCGGTTAATAAGATATGCCTCTGAATTATG
GATTGACATTATGAGTAG-------TAGATGCCTTTGCTTCACTGAATGGAATTACACTTTGAC---TCGTGAGCTTTAC
TTCACCGAGTGCG----GCTGTAAAATTATGTTATCCTGTCACTAGCTAGTAGCTAGCATGGGTCATTTAGGTA-----T
TCTTTTCAATTAGCACGGCCGGAATATAGTAACCTAAATTCGATCCGAAGAGAAGTCGGG---------TC--TTCGTGC
GTGGTTCCTATCAGCCAGCTGAACTAGGCTGGGTTCCCATCATTTGGATCTCCGTGCCAGAAAAGTTTGAGAGCTAACCG
CTACCCATTTGTTGGTATGCATGCTGCAGTTTAAAACAATGCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATA
ATGACTTAACCTGTGCATCAAAGTCAAGGAGCAAGCGTTGTTTTGCTTTCATTCAAGGATATTTTTTGGTGAGAGCTTGA
AGAGATATCT-AGCCATCAAAACCAGATCAAGCGTACGTACTGTCGCTGTAGAATTAAACCTCACTGCGCTGTCACTTTA
CTAATATC----GCTCGCACCAGCTCTTGTCAAGCGTGGAGACTGGCCATCACTCTCACAGTGCCATATCTATTGCTGCC
GCCAACTGCCG---GTGCCGTAGCCA
>chr5B_1
TGCATGTGGACGCACACATGGGCGACTGTGAGAGCGCCACGTGACACGGG-TGTCCAGCACGTTAGTAACAACGACGTCT
AGCAATCAACTCCCTAATCG-ACGACAAACACATGTTTGGGCATTGGTGGGGGTGAGCGGCGCGATGAAGGGGAAAAGTG
AGCAGAGTTGGTTTGCCCGGGCAAAACTGAGCACAACTTTGTAACCAGGGCACAGAAATAGAAAATCCTTTTATTAAATT
ATT-AACGGAGTCCGAGAAAACAAATATATTGATCAACCCAAAGCCATCTTTTTGGCGATCTTTGTTGCTACTCCTGTAA
GTTTGATGATGTGCCCTGACCTCGCATCAACCCACATCATCTAATGCAGTAGCCTCATCAAACCGCCTCACAGCGAGCCG
AGAGCACCAACCGGTCTAGCATACCCTCACCGCTCTAGAATTCGTCGTCTCCATCTCCCGTCGTTTCAACTTCAAAAAAG
ATCAACGCATTGATCTTGCCAAGTCCAAC-GTTGTCGGCGTCACCACGACGCCAGACAACGCCACTGTTCTCCGGGCGTC
CATCATAAAATTTAGTAATACGAAGGAAAAACATGAAAATGTCAACACCACGAATGGCTACACGAATCATGGCGCCAACT
GGTTACGTAAACAA------------------------------------------------------------------
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--------GAAATAAATCCAGACCACGCACGATACCATCGTGTGGACCGAATGCTCGCCCCAAATTAACCAGATGCTCCG
ACGAATGATCCTAAAATAAGAACACTGTGCGCACTGGTGCCCATTCTTGTAACCTTGCGAGACTCCTTTTT-CTTCCAAT
GCAATTACACGTAAAGCTTTTGCGTGCCCGCGGAAAAGAAATGGAGAAAACCATCACCCCTCTCTCTCGTGCTCCTGCCC
ATATAAGTACCAGCATCCAAGGCCGCGATAGCAAAAGCCTTCCCACTACCTTCCCTTCCATCTCAGACGCCAC-AGCCC-
--CGACGGGCGCCGGCCGGCAAGAAGGCGTCGTCCGCACCATCGTCCATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAG
GCGCTCGCCAACGGCACGGCGGTGGCGCCCGAGAGGAAGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAACGCAACCA
CGCCGCCGGCATCGGTGGGTACGCCGTCGACGGCTGCCGCGAGTTCATGGCGTCGGCCCCCGCGGGCGCCGAGGCGCTCC
TCTGCGCGGCGTGCGGCTGCCACCGCAGCTTCCACAAGCGCGAGGTGGAGGCCGTCGACTGCGACTGCTCCTCCGACACC
TCCGGCAGGTGATCGCCGCCG-CC-GTCGCTGCCCAAGTCCGCTGTTCTCTTGCTGGCTCGTC-CGGGTAGACCGGCATC
----GGCAGGTAAGGTGTGGTGGACGTTGAGATGACTCCATTCGATCTCGATCGATCT----ATCAAATACATATATATG
GCCCGGTTAATTTATCTTCTTCCTCCTCCTCT------TCCTGGTATTGGGATTAATTTGGTGCTCGATTGTGTGTGATG
TAATTAACATATCCGTACGTGTAACATATGCGTGTTGATGAGAATCCAAACTGGTGCGTGTGT----AGATCGATCGGTG
AGATGAACATCTTGTAACTTGTACAGATTTGTGCTTCTTGTTTGGAACCAGCAGTTAATAAGATATGCCTCTGAATTATG
GATTAACATTATGAGTAG----------ATGCCTTTGCTTTACTGAATGGAATTACGCTTTGAC---TCGTGAGCTTTAC
TTCACCGAGTGCG----GCTGTAAAATTATGTTATCCTGTCACTAGCTAGTAGCTAGCATGGGTCATTTAGGTAGTATAT
TGTCTTCAATTAGCACGGCCGGAATATAGTAACCTAAATTCGAGCCGAAGAGAAGTCGGGGATCGAGGATC--GTCGTGA
CTGGTTCCTATCAGCCAGCTGAACTAGGCTGGGTTCCCATCATTTGGATCTCCGCGCCAGAAAAGTTTGAGAGCTAACCG
CTACCCATTTGTTGCTATGCATGTTGCAGTTTAAAACAGTGCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATA
ATTACTTAACCTGTGCATCAAAGTCAAGGAGCAAGCGTTGTTTTGCTTTCATTCAAGGATATTTTTTGGTGAGAGCTTGA
AGAGATATCT-AGCCATGAAAACCAGATCAAGCGTACGTAGTGTCGCTGTAGAATTAAACCTCACTGCGCTGTCACTTTA
CTAATAGA----GCTCGCACCAGCTCTTGTCAAGCGTGGAGACTGGCCATCACTCTCACAGTGCCATATCTATTGCTGCC
GCCAACTGCCG---GTGCCGTAGCCA
>chr5A_4
ATGTGGAC-ACACACACACGGACGACTATGAGAGCGCCACATGGCATGGGGTGTCCCACACATCAGTAACAACGACGGCT
AGCAATCAACTCCCTTGATCAACGACAAGCACCTGTTTGGGCATTGGTGAGGGTGGGCGGCATGATAAAGGGGAAAAGTG
AGCAAAGTTAGTTTGCCCAAGCAAAACTGAGCACAACTTTGTAACCAGGCCACAAAAATAGAAAACTCTTTTATTAAATT
ATTCAACGGAGTACAAGAACATAAAAACATAGATCAACCCAAAGTCATTTTTCTGGCGATCTCTGTCACCATCCCTATAA
GCTTGATGATGTGTCGTGACCTCGTATCAACCCACATCATCTAATCCAGTAGCCTCACCAAGCCGCCCCACACTGAGTCG
AGAGCACCAACCGGTCTAGCATACCCTCACCTCTCTAGAATCCGTCGTCTTCATCTTCCGCTGTCCCAACTTCAAAAGAG
ATCAACGCATTGGTCTTGCCAAGCCCAACTGTCGTCGACGTCACCACGACACTAGACAACGCCATCATTCTGCGCGCGTC
CATCATAGAATTTACCAATATGAAGAAAAAACATGAAAATATCAACACGACAAATGGCTACACGAATCATGGCGCCAACC
GGTTACGTAAACAAAAAAAAAATGAAACTCCATGGGCACTAGCACCCACGGTTTTATTGATATAGAAGAAGCATCCCTCA
TGAGAATTCCAGAAATTCGTCCCCGACGTGGATCGAACTCTGGTCGTTAGGTTTACAATCATGCGCCCCCAACCGGTTAC
GTAAACAAGAAATAAATCCAGACCACACACGATACCATCGTGTGGACCGAATGCTCGCTCCAAATTACCCAGGTGCTCCG
GCGCATGAT-CTAAAACTAGAACACTGTGCGCACTGGTGCCCGTTCTTGTAACCTTGAGAGACTCCTTTTTTCTCCTAAC
GCAATTACACGCAAAGCCTTTGCGTGGCCGCGGAAAAGAAATGGAGAAAATCATCGCCCCTCCCTCTCGTGCTCCTGCCC
ATATAAGTACCAGCATCCAAGGCCGCGATAGCAAAAGCCTTCCCACTCCCTTCCCTCCCATCCCAGACGCCAC-AGACCC
GACGACGGCCGCCGGCCGGCAAGAAGGCGTCGTCC------------ATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAG
GCGCTCGCCAACGGCACGGCGGTGGCGCCCGAGAGGAAGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAGCGCAACCA
CGCCGCCGGCATCGGCGGCTACGCCGTGGACGGCTGCCGCGAGTTCATGGCGTCCGCCCCCGCGGGCGCCGAGGCGCTCC
TCTGCGCGGCGTGCGGCTGCCACCGCAGCTTCCACAAGCGCGAGGTGGAGGCCGTCGAGTGCGACTGCTCCTCCGACACC
TCCGGCCGGTGATCGCCGCCGCCC-GTCGCCGCCCAAGCCCGCTGTTCTCTTGCTGGCTCGTCACGGGTAGACCGGCATC
TATCGGCAGGTAAGGCGTGGTGGACGTTGAGATGACTCCATTCGATCTCGATCCATCT----ATCAAATACATATATATG
GCCCGGTTAATTTATCTTCTTCCTCCTCCTCCTCTTCCTCCTGGTATTGGGATTAATTTGGTGCTCGATTGCGTGTGATG
TAATTAACATATCCGTACGTGTAGCATATGCGTGTTGATGAGAGTCCAAACTGGTGCGTGTGTGTGTAGATCGATCGGTG
AGATGAACACCTTGTAATTTGTACAGATTTGTGTTTCTTGTTTGGAACCAGCAGTTAATAAGATATGCCTCTGAATTATG
GATTGACATTATGAGTAGAGTAGAGTAGATGCCTTTGCTTCACTGAATGGAATTACACTTTGACTCATCGTGAGCTTTAC
TTCACCGAGTGCGCGCGGCTGTAAAATTATGTCATCCTGTCACTGGCTAGTAGCTAGCATGGGTCGTTTAGGTA-----T
TGTTTTCAATTAGCACGGCCGGAATATAGTAACCTAAATTCGAGCCGAAGAGAAGCCGGA---------TCTCTTCGTGC
GTGGTTCCTATCAGCCAGCTGAACTAGGCTGGGTTCCCATCATTCGGATCTCCGTGCCAGAAAAGTTTGAGAGCCAACCG
CTACCCATTTGTTGGCATGCATGTTGCAGTTCAAAACAGTGCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATA
ATTTCTTAACCTCTGCATCAAAGTCAAGGAGCAAGCGTTCTTTTGCTTTCAATCAAGGATATTTTTTGGTGAGAGCTTGA
AGGGTTATCTTAGCTATCAAAACCAGATCAAGCGTACGTAGTGTCGCTGTACAATTAAATCTCACTGCGCTGTCACTTTA
CTAATATCGCTCGCTCGCACCAGCTCTTGTCAAGCGTGGAGACTGGCCGTCACTATCACAGTGCCATATCTATTGCTGCC
GCCAACTGCCAACAGTGCCGTAGCCA
>SNPs
-----------------------------------------------------------------------S----S---
------------S-------------------------------------------------------------------
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-------S----------------------------------------------S--------S-------S--------
-S---------------------------------S--S-------S-------------------------------S-
------S--S-------------S-------------------S---S---------------------S----------
-----S---S---S----S--S------S-S-S-----------S-S----------------S-------S---S----
-------------------SSS----------------------------------------------------------
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-------------S------------------------------------------------------------------
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-----------------------------------------------------------------------SSS------
----------------------------------------S---S-----------------------------------
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------------------------S---------------S---------------------------------------
----------------------------------------------------------SSSS------------------
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----------S-----------------------------------------S---------------------------
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-S-----------------------------------------S------------------------------------
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-----------------------S--------------S-----------------------------------------
--S-----------------------------------------------------------------------------
----------------------------------------S---------------------------------------
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>forward_470
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--------------------------------------------------CCATCTTCCGTCGTCCCAAT----------
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>reverse_1481
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----------------------------------------TGCTGTTCTCTTGCTGGCTC--------------------
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