>input_sequence_85036
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAGGCGC
TCGCCAACGGCACGGCGGTGGCGCCCGAGAGGAAGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAACGCAACCACGCC
GCCGGCATCGGTGGGTACGCCGTCGACGGCTGCCGCGAGTTCATGGCGTCGGCCCCCGCGGGCGCCGAGGCGCTCCTCTG
CGCGGCGTGCGGCTGCCACCGCAGCTTCCACAAGCGCGAGGTGGAGGCCGTCGACTGCGACTGCTCCTCCGACACCTCCG
GCAGGTGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr5B_1_TraesCS5B01G141400
TGTGGACGCACACATGGGCGACTGTGAGAGCGCCACGTGACACGGG-TGTCCAGCACGTTAGTAACAACGACGTCTAGCA
ATCAACTCCCTAATCG-ACGACAAACACATGTTTGGGCATTGGTGGGGGTGAGCGGCGCGATGAAGGGGAAAAGTGAGCA
GAGTTGGTTTGCCCGGGCAAAACTGAGCACAACTTTGTAACCAGGGCACAGAAATAGAAAATCCTTTTATTAAATTATT-
AACGGAGTCCGAGAAAACAAATATATTGATCAACCCAAAGCCATCTTTTTGGCGATCTTTGTTGCTACTCCTGTAAGTTT
GATGATGTGCCCTGACCTCGCATCAACCCACATCATCTAATGCAGTAGCCTCATCAAACCGCCTCACAGCGAGCCGAGAG
CACCAACCGGTCTAGCATACCCTCACCGCTCTAGAATTCGTCGTCTCCATCTCCCGTCGTTTCAACTTCAAAAAAGATCA
ACGCATTGATCTTGCCAAGTCCAAC-GTTGTCGGCGTCACCACGACGCCAGACAACGCCACTGTTCTCCGGGCGTCCATC
ATAAAATTTAGTAATACGAAGGAAAAACATGAAAATGTCAACACCACGAATGGCTACACGAATCATGGCGCCAACTGGTT
ACGTAAACAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
----GAAATAAATCCAGACCACGCACGATACCATCGTGTGGACCGAATGCTCGCCCCAAATTAACCAGATGCTCCGACGA
ATGATCCTAAAATAAGAACACTGTGCGCACTGGTGCCCATTCTTGTAACCTTGCGAGACTCCTTTT-TCTTCCAATGCAA
TTACACGTAAAGCTTTTGCGTGCCCGCGGAAAAGAAATGGAGAAAACCATCACCCCTCTCTCTCGTGCTCCTGCCCATAT
AAGTACCAGCATCCAAGGCCGCGATAGCAAAAGCCTTCCCACTACCTTCCCTTCCATCTCAGACGCCAC-AGCCC---CG
ACGGGCGCCGGCCGGCAAGAAGGCGTCGTCCGCACCATCGTCCATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAGGCGC
TCGCCAACGGCACGGCGGTGGCGCCCGAGAGGAAGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAACGCAACCACGCC
GCCGGCATCGGTGGGTACGCCGTCGACGGCTGCCGCGAGTTCATGGCGTCGGCCCCCGCGGGCGCCGAGGCGCTCCTCTG
CGCGGCGTGCGGCTGCCACCGCAGCTTCCACAAGCGCGAGGTGGAGGCCGTCGACTGCGACTGCTCCTCCGACACCTCCG
GCAGGTGATCGCCGCCGCC-GTCGCTGCCCAAGTCCGCTGTTCTCTTGCTGGCTCGTC-CGGGTAGACCGGCATC----G
GCAGGTAAGGTGTGGTGGACGTTGAGATGACTCCATTCGATCTCGATCGATCT----ATCAAATACATATATATGGCCCG
GTTAATTTATCTTCTTCCTCCTCCTCT------TCCTGGTATTGGGATTAATTTGGTGCTCGATTGTGTGTGATGTAATT
AACATATCCGTACGTGTAACATATGCGTGTTGATGAGAATCCAAACTGGTGC----GTGTGTAGATCGATCGGTGAGATG
AACATCTTGTAACTTGTACAGATTTGTGCTTCTTGTTTGGAACCAGCAGTTAATAAGATATGCCTCTGAATTATGGATTA
ACATTATGAGT-------AG---ATGCCTTTGCTTTACTGAATGGAATTACGCTTTGAC---TCGTGAGCTTTACTTCAC
CGAGTGCG----GCTGTAAAATTATGTTATCCTGTCACTAGCTAGTAGCTAGCATGGGTCATTTAGGTAGTATATTGTCT
TCAATTAGCACGGCCGGAATATAGTAACCTAAATTCGAGCCGAAGAGAAGTCGGGGATCGAGGATCGTCGTGACTGGTTC
CTATCAGCCAGCTGAACTAGGCTGGGTTCCCATCATTTGGATCTCCGCGCCAGAAAAGTTTGAGAGCTAACCGCTACCCA
TTTGTTGCTATGCATGTTGCAGTTTAAAACAGTGCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATAATTACTT
AACCTGTGCATCAAAGTCAAGGAGCAAGCGTTGTTTTGCTTTCATTCAAGGATATTTTTTGGTGAGAGCTTGAAGAGATA
TC-TAGCCATGAAAACCAGATCAAGCGTACGTAGTGTCGCTGTAGAATTAAACCTCACTGCGCTGTCACTTTACTAATAG
AGCTC----GCACCAGCTCTTGTCAAGCGTGGAGACTGGCCATCACTCTCACAGTGCCATATCTATTGCTGCCGCCAACT
GCCGGTGCCG
>chr5D_1
TGTGGACACACACACGGGCGACTGTGAGAGCGCCACGTGACACGGGGTGTCCCACACGTCAGTAACAGCGACAGCTAGCA
ATCAACTCTCTTGATCAACGACAAACACCTGTTTGGGCATTGGTGAGGGTGAGCGGCACGATG-AGGGGAAAAGTGAGCA
AAGTTAGTTTGCCCAGGCAAAACTGAGCACAACTTTGTAACCAGGGCACAAAAATAGAAAACCCTTTTATTAAATTATTC
AACAGAGTACGAGAACACAAATACATAGATCAACCCAAAGCCATCTTTCTCGCGATCTCCGTCACCAACCCTGTAAGGTT
GATGATGTGTCGTGACCTCGCATCAACCCACTTCGTCTAATCGAGTAGCCTCACCAAGCCGCCCCACAGTGAGTTGAGAG
CATCATCCGGTCTAGCATATCCTCACCGCTCTAGAATCCATCGCCTCCATCTTCCGTCGTCCCAATTTCAAAAGAGATCA
AAGCAATGGCCTTGACAGGCCCAATTTTAGTCGACGTCACAATGACACCAGACAACGCCGCCGTTCTACGCACGTCCATC
ATAGAATTTACCAATTACAA-AAAAAACATGAAAATATCAACACGACAAATGGCTACACGAATCATGGCGCCAACCGGTT
ACGTAAACAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
----GAAATGAATCCAGACCACACACGATACCATCGTGTGGACCGAATGCTCGCCCCAAATTAACCAGGTGCTCCGACGC
ATGATCCTAAAACAAGAACACTG-------TGGTGCCCATTCTTGTAACCTTGCGAGACTCCTTTT-TCTCCTAACGCAA
TTACACGCAAAGCTTTTGCGTGCCCGCGGAAAAGAAATGGAGAAAACCATCACCCCTCCCTCTCGTGCTCCTGCCCATAT
AAGTACCAGCATCCAAGGCCGCGATAGCAAAAGCCTTCCCACTCCCTTCCCTTCCATCCCAGACGCCCATAGCCC---CG
ACGGCCGCCGGCCGGCAAGAAGGCGTCGTCCGCACCGTCGCCCATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAGGCGC
TCGCCAACGGCACGGCGGTGGCGCCCGAGAGGAAGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAGCGCAACCACGCC
GCCGGCATCGGCGGGTACGCCGTGGACGGCTGCCGCGAGTTCATGGCGTCCGCCCCCGCGGGCGCCGAGGCGCTCCTCTG
CGCGGCGTGCGGCTGCCACCGCAGCTTCCACAAGCGCGAGGTGGAGGCCGTCGACTGCGACTGCTCCTCCGACACCTCCG
GCCGGTGATCGCCGCCGCCCGTCGCTGCCCAAGCCTGCTGTTCTCTTGCTGGCTCGTC-CGGGTAGACCGGCATC----G
GCAGGTAAGGCGTGGTGGACGTTGAGATGACTCCATTCGATCTCGATCGATCTATCAATCAAATACATATATATGGCCCG
GTTAATTTATCTTCTTCCTCCTCCTCT------TCCTGGTATTGGGATTAATTTGGTGCTCGATTGTGTGTGATGTAATT
AACATATCCGTACGTGTAGCATATGCGTGTTGATGAGAATCCAAACTGGTGC----GTGTGTAGATCGATCGGTGAGATG
AACATGTTGTAATTTGTACAGATTTGTGCTTCTTGTTTGGAACCAGCGGTTAATAAGATATGCCTCTGAATTATGGATTG
ACATTATGAGT-------AGTAGATGCCTTTGCTTCACTGAATGGAATTACACTTTGAC---TCGTGAGCTTTACTTCAC
CGAGTGCG----GCTGTAAAATTATGTTATCCTGTCACTAGCTAGTAGCTAGCATGGGTCATTTAGGTA-----TTCTTT
TCAATTAGCACGGCCGGAATATAGTAACCTAAATTCGATCCGAAGAGAAGTCGGGTC---------TTCGTGCGTGGTTC
CTATCAGCCAGCTGAACTAGGCTGGGTTCCCATCATTTGGATCTCCGTGCCAGAAAAGTTTGAGAGCTAACCGCTACCCA
TTTGTTGGTATGCATGCTGCAGTTTAAAACAATGCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATAATGACTT
AACCTGTGCATCAAAGTCAAGGAGCAAGCGTTGTTTTGCTTTCATTCAAGGATATTTTTTGGTGAGAGCTTGAAGAGATA
TC-TAGCCATCAAAACCAGATCAAGCGTACGTACTGTCGCTGTAGAATTAAACCTCACTGCGCTGTCACTTTACTAATAT
CGCTC----GCACCAGCTCTTGTCAAGCGTGGAGACTGGCCATCACTCTCACAGTGCCATATCTATTGCTGCCGCCAACT
GCCGGTGCCG
>chr5A_9
--------CACACACGGACGACTATGAGAGCGCCACATGGCATGGGGTGTCCCACACATCAGTAACAACGACGGCTAGCA
ATCAACTCCCTTGATCAACGACAAGCACCTGTTTGGGCATTGGTGAGGGTGGGCGGCATGATAAAGGGGAAAAGTGAGCA
AAGTTAGTTTGCCCAAGCAAAACTGAGCACAACTTTGTAACCAGGCCACAAAAATAGAAAACTCTTTTATTAAATTATTC
AACGGAGTACAAGAACATAAAAACATAGATCAACCCAAAGTCATTTTTCTGGCGATCTCTGTCACCATCCCTATAAGCTT
GATGATGTGTCGTGACCTCGTATCAACCCACATCATCTAATCCAGTAGCCTCACCAAGCCGCCCCACACTGAGTCGAGAG
CACCAACCGGTCTAGCATACCCTCACCTCTCTAGAATCCGTCGTCTTCATCTTCCGCTGTCCCAACTTCAAAAGAGATCA
ACGCATTGGTCTTGCCAAGCCCAACTGTCGTCGACGTCACCACGACACTAGACAACGCCATCATTCTGCGCGCGTCCATC
ATAGAATTTACCAATATGAAGAAAAAACATGAAAATATCAACACGACAAATGGCTACACGAATCATGGCGCCAACCGGTT
ACGTAAACAAAAAAAAAATGAAACTCCATGGGCACTAGCACCCACGGTTTTATTGATATAGAAGAAGCATCCCTCATGAG
AATTCCAGAAATTCGTCCCCGACGTGGATCGAACTCTGGTCGTTAGGTTTACAATCATGCGCCCCCAACCGGTTACGTAA
ACAAGAAATAAATCCAGACCACACACGATACCATCGTGTGGACCGAATGCTCGCTCCAAATTACCCAGGTGCTCCGGCGC
ATGAT-CTAAAACTAGAACACTGTGCGCACTGGTGCCCGTTCTTGTAACCTTGAGAGACTCCTTTTTTCTCCTAACGCAA
TTACACGCAAAGCCTTTGCGTGGCCGCGGAAAAGAAATGGAGAAAATCATCGCCCCTCCCTCTCGTGCTCCTGCCCATAT
AAGTACCAGCATCCAAGGCCGCGATAGCAAAAGCCTTCCCACTCCCTTCCCTCCCATCCCAGACGCCAC-AGACCCGACG
ACGGCCGCCGGCCGGCAAGAAGGCGTCGTCC------------ATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAGGCGC
TCGCCAACGGCACGGCGGTGGCGCCCGAGAGGAAGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAGCGCAACCACGCC
GCCGGCATCGGCGGCTACGCCGTGGACGGCTGCCGCGAGTTCATGGCGTCCGCCCCCGCGGGCGCCGAGGCGCTCCTCTG
CGCGGCGTGCGGCTGCCACCGCAGCTTCCACAAGCGCGAGGTGGAGGCCGTCGAGTGCGACTGCTCCTCCGACACCTCCG
GCCGGTGATCGCCGCCGCCCGTCGCCGCCCAAGCCCGCTGTTCTCTTGCTGGCTCGTCACGGGTAGACCGGCATCTATCG
GCAGGTAAGGCGTGGTGGACGTTGAGATGACTCCATTCGATCTCGATCCATCT----ATCAAATACATATATATGGCCCG
GTTAATTTATCTTCTTCCTCCTCCTCCTCTTCCTCCTGGTATTGGGATTAATTTGGTGCTCGATTGCGTGTGATGTAATT
AACATATCCGTACGTGTAGCATATGCGTGTTGATGAGAGTCCAAACTGGTGCGTGTGTGTGTAGATCGATCGGTGAGATG
AACACCTTGTAATTTGTACAGATTTGTGTTTCTTGTTTGGAACCAGCAGTTAATAAGATATGCCTCTGAATTATGGATTG
ACATTATGAGTAGAGTAGAGTAGATGCCTTTGCTTCACTGAATGGAATTACACTTTGACTCATCGTGAGCTTTACTTCAC
CGAGTGCGCGCGGCTGTAAAATTATGTCATCCTGTCACTGGCTAGTAGCTAGCATGGGTCGTTTAGGTA-----TTGTTT
TCAATTAGCACGGCCGGAATATAGTAACCTAAATTCGAGCCGAAGAGAAGCCGGATC-------TCTTCGTGCGTGGTTC
CTATCAGCCAGCTGAACTAGGCTGGGTTCCCATCATTCGGATCTCCGTGCCAGAAAAGTTTGAGAGCCAACCGCTACCCA
TTTGTTGGCATGCATGTTGCAGTTCAAAACAGTGCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATAATTTCTT
AACCTCTGCATCAAAGTCAAGGAGCAAGCGTTCTTTTGCTTTCAATCAAGGATATTTTTTGGTGAGAGCTTGAAGGGTTA
TCTTAGCTATCAAAACCAGATCAAGCGTACGTAGTGTCGCTGTACAATTAAATCTCACTGCGCTGTCACTTTACTAATAT
CGCTCGCTCGCACCAGCTCTTGTCAAGCGTGGAGACTGGCCGTCACTATCACAGTGCCATATCTATTGCTGCCGCCAACT
GCC-------
>SNPs
-------S------S-------------------------------------SS-----S-------------S------
-----------SSSSS------------S----------------S-----------S----------------------
S----S--------S-----------------------------------S----------S------------------
--------S------S-------S--S---------------------S---------S---SS-S-SS--------S--
---------S-S-----------------------------S-----------S---S-----S-----S---S------
-------------------------------------S--------------S-------SS-----------S------
--------S----------S--------S----S------------S--------------S-----S--S---------
---S------SS----S----S--------------S-------S--S---------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------S----------S
------------S---------------------------------------------------------S-S--S----
-------S--------------------------------------------------S---------------------
-------------------------------------------S--------------S---------------------
----S-------------------------------S---S---------------------------------------
-------------------------------------------------------------------S------------
-----------S-----------S--------------------------S-----------------------------
--------------------------------------------------------------------------------
--S------------------------------S----------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
------------S------------------------------------------------------------------S
-----------------------------------S---------------S----------------------------
---------------------------------------------------------------------SSSSS----S-
-------------------------------------------------------SSSSSSSSS--S-----SS------
-----------------------------------------------S--------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S--------------------------------------------------------------------S
S-------------------------------------------------------------------------------
----------
>forward_384
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GTAGCCTCATCAAACCGCCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_2062
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GGATCGTCGTGACTGGTTC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
