>input_sequence_85029
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------------------------------------------------------------ATGGCTCTCGCTCTCTCCGG
CTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCGGCCA---CCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGG
CGATGAGGCGCGGCGCCGCGGCGGCCGCGGACGGGAAGGCGGCCAGGGAGGCCGAGAAGGCCGCGGCCGACGCCTCGTGG
GTGCCCGACCCCGTCACCGGCCACTACCGCCCCGCCAACCGCGCCGTCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCA
CCTCGGGCAGACCTACGCACGGGCTTGA----------------------------------------------------
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------------------------------
>chr3D_1_TraesCS3D01G180900
TCCAGCCGACCCGCGCGCGCGATGCGCCGACGACCAACCGAGATGCCGACCGCGTCAAGTCTCCGCATCATCACGGGGCC
CTATGCCCGTCGGCGCGCGACCCGGTCGGCCCGGTAGCTGCTATGCCTAGCGAGCGACGGCCGCGCGCCGGGCCGGGTAC
GACCTGTCCAGATGCGGCTCACTTG-----CTCCCTCGCGCTGCCGACCGCGCCCCACGCCTCCACCAGACGCCGCCTCC
TCGGCTCACGACGAGCCTG-GGTCCCCGGTCCACGCTTGCTCGCTCGCCAAAAGATCTCCTCCACGTCCCAGGAGGCGAC
ACGTAGACCCCTTCCATGTG-CCCCCACCCAAATACTCAAAGCGAGGCAAGATAAAATAAT-------------------
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-------------------GTTTTTGTTTTCGCATCGTGTTCTACTACCCAGAATACGTGGATAAACTACCCTAAAAAAA
GAATACGTGGATAAACCTTACTAGTGCAACGTGTAACGTAGTACGCCAACGACGTAC-CCTGAAAATTA-TTTTTACTGC
GCGCCAAACCGAGAAGAGCA-AGGCAACTTCGCCGTTCACAACGAAGCAACCACGACTACGGAT-TACCCCTCTCAAAAG
TCCAAATTGTCACCAACTTTTT-------ATTAAGCGCGCGTCGCGCTCACCAAGCCCATGTCGACCCGGCAATGCACGC
TAACATCAGCTCGAGAAGAGTAAACAAAAATATCAG-------------------------GTCGACCACGTAGGAAGGA
AGCGACGAACCCGCGGCGCCATTTCCTGCGT-CCGTCGCGTCGGCACGTGCCGGTACGCCGTGCTGAGTGACGGCGCCCA
AAAGCCACCAAATCTTTGACAAAACCCCGCGCCGTTCCGCCCTTTTTACCTCGCCTGCCCCTCCCCGTCCCTCTTTATAT
ACGGCCCG------CC--CTCGTTCGCCCACACCACCAATAAAGCCCACCAAGCCTCAAACGCCCACGTTGGAGCAGCAG
CAGCACCAGCACCGAGCCGGAGCCCACCAGCCGTCCGATAA----------ACAGATCCGATGGCTCTCGCTCTCTCCGG
CTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCGGCCA---CCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGG
CGATGAGGCGCGGCGCCGCGGCGGCCGCGGACGGGAAGGCGGCCAGGGAGGCCGAGAAGGCCGCGGCCGACGCCTCGTGG
GTGCCCGACCCCGTCACCGGCCACTACCGCCCCGCCAACCGCGCCGTCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCA
CCTCGGGCAGACCTACGCACGGGCTTGAAGGCCACGCTCGA--CGACCCTCCTGGCCCCGCCATGGAAGG-AAAACTGCT
AT-GCTACGTAAAA---------GGGGAAGC--CAGGCGGGGCTCGTTCGCCGAGCGCAGCGCCGCGGGCGGCTGGTGTC
GCTGGCGCGGCTTAACGACGCATCAATCATCATCGTCGATCCTATACTACGGAGGAGATGCGGCCTGGATGTTTGGCTGT
TTCCCATTGTGTGTGTGTGCGCGTGCGTGCGTGCGTCCGGGC--------TTGGATGCCCTGCTATAGTGTTCATGTGCT
CAGATCAGATGTATTTCTCGTCGAGCAGGGCTTGTACCTTTTACTTTTACAGCTA---AGTA--TTAATAACGAAAGAAT
CTAGCGTTTTCTTTTCCTAAACACATGTTAAGTATTGAATCTGCAAACGAAGCTCCTTCTTGACTAAATTTACAAAAATG
CTAACGCC----CGTGTGACAGTTTT-GCAACTCGTCCACACGCGTGGATCATCGTTCAGTGCAGTTTGCAT-AATCTTG
ACACACTGAGGTCAAATTTGCGTGCCACGTAGGACGGGGCTGGTGGATGTGGTCGTTGGAGAGTTCAACTCTCT----CC
GCACCACGCTGTTTGTCAGCTGCGCTGTATGGGCAAACTAGTTTCTGCCCACACAGTCACCACCTAGT-CCATGCGCGTG
TGGGCGAACTGCTTTTCGCCCACACAACACTCCTATGTTGTTGGATGGCAACTGCAGTTACGCGTTACGCGTAC--GTGG
CAACTAGTTAAACACACATGGCAACTATGATTCGTTGCTGGACGGTAACTGTATAGTTGCGGGTACATGGCAACCAAATA
AGCACACATGACAAGTGTGATTAACCATACATGGCAACTTTGGTTGCACCACACGTGGCAACTAGGTAAACACACATGGC
AACTACTGTTTGACCATATGTGGCAATTAGTTAATCACACACGGCAACTACGGTTTGATTACACGTGGCAATTACCATAA
ATTAGACA-TGGCAACTATAGTTAACCAAA
>chr3B_1
TCCAGCCGACCCGCGCGCGCCATGCGCCGACGACCGACCGAGACGCCGACCGCGTCAAGTCTCCGCATCATCACGGGCCC
ATATGCCCGTCGGCGCGCGACCCGGTCGGCCCGGTAGCTGCTTTACCTAGCGAGCGACGGCCGAACGCCCGGCCGGGTAC
GACCTGTCCAGATGCGGCTCACTCGCTCTTCTCCCTCGCGCTGCCGACCGCACCCCCCGCCTCCACCAGACGCCGCCTCC
TCGGCTCACGACGAGCCTGGGGTCCCCGGTCCACGCTTGCTCGCTCGCCAAAAGATCTCCTCCACGTCCCAGGAGGCGAC
ACGTAGACCTCTTCCATGTGCCCCCCATCCAAATACTCAAAGCGAGGCAAGATAGAATAATGTTTGGAAACACTAACTTC
CACACGTGTGGCGTTTGCATCTTACTCATACGCGTGGATTCGCGTCCGTTTGTGGGTGCACAAATCTTGACGTGTTTATG
ATGCCACGTAGGACCGAACTGATGTGTGGGCATTCATCATCTTGGCATGTTTGTGGTGCCATGTAGGACTTGGCTGGTGT
GTGAGCATTCACCCGGTCGCCCACACGTCTGTTTCACCACATGAAGGGGCCGTTGTGTGGGCGTTTAGCAGTTCGCCCAC
ACGCTAGTTTTCACTGACGCACAAGGGTTGGTGTGTGGGCATTTGCCATTTCGTCCACACGCCCGTCTCCTCTCCTACAC
CCAAGCTGCCAGTTGCCATGTGTTTTGCAGTGTACATGGAAACTGCCCTACTGTGCTTGTAAGCAGTTGGCAACTTTTTT
TTTTACCCGAACATGTCAGTTGCTATCTGTTTTGCAACGTACACGGCAACTTTTCTAGTGTGCTTGTAAGCAGATGGCAA
CTCTCTCTTTACCCGAACATGTTGTTTTATCATGTCTTTTTATAGCGCTACATGGCAGTTGCCTAGTGTTAGTAGGTGGC
AACTCCTAAGGCTTTCAAATCATGCCAACTGTTGTAAACCAGACCACATGGCAACTGCTTAGTGTTAGTAGGTGGCAACC
TCTAAAATTTCAAATCATGGCAACTATAGTAAACCAGACCATACATGGCAACAGTTGCAGTTGTCCAAAATGGCATCTCG
CACTTGACCTGAGATGACAACGGCAATTGAGCAACCATGTCAACTGCAGTTAAACGGACATTGAAGAGGGTCCGGACCAC
GACAACTGTGGGGACGCGTGCTGACTGTCATGCGGGGCGTGCCGGACCGTGAGGTAGGTGACTGAGAGAGGTTGTGTGGC
TGTTATCCATTTTGCCCACACGTAGGCGGGTAAGAGGGATCGCAAGGAAAAAAAGACGTGTGTGCGCAAGTTGTTTTGCC
CGCACGTAAGCGTGTAGGCTGGTCCTTTTAGACACCACAGAAAACGTGTGACCAGACCCCTTAACGTCCACACGTGTGGC
AGTTATCGTCGCTCATAATGTTTTTGTTTTCGCATCGTGTTCCACTACCCCGAATA------------------------
---TACGTGGATAATGGTTACTAATGCAACGTGTAACTTAGTACGCCAACGACGTAATCCTGAAAATTATTTTTTACTGC
GCACCAGACCGAGAAGAGCAGAGGCAACTTCGCCGTTCACAACGAAGCAAACACAACTTGGCTTACCCT-CTCTCAAAAG
TCCAAATTGTCACCAACTTTTT-------ATTAAGCGCGCGTCGCTCTCACTG-GCTCATGTCGACCCGGCAATGCACGC
TATCATCAGCTCGAGAAGAGTAAACAAAAATATCAG-------------------------GTCGACCACGTAGGAAGGA
AGCGACGAACCCGCAGCGCCATTTCCTGCGT-CCGTCGCGTCGGCACGTGCCGGTTCGCCGCGATGAGTGACGGCGCCCA
AAAGCCACCGAATCTTTGACAAAAC-CCGCGCCGTTGGGCAAGTTTTACCCGCCTGCCCCTGCCCCGTCTCCCTTTAAAT
ACGGGCCCTGGCCTCC--CTCGTTCCCCCACACCACC---AAAGCCCACCCAGCCTCAAACGCCCACGTTGGAGCAGT--
-AGCAGCAGCACAGAGCCGGAGCCCTCCAGCCGTCCGATCGTCCGACACAGACAGATCCGATGGCCCTCGCTCTCTCCGG
CTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCAGCCACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGG
CGATGAGGCGCGGCGCCGCGGCGACCGCGGACGGGAAGGCGGCCAGGGAGGCTGAGAAGGCCGCGGCCGACGCCTCGTGG
GTGCCCGACCCCGTCACCGGCCACTACCGCCCCGCCAACCGCGCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCA
CCTCGGACAGACCTACGCACGGGCTTGAAGCCC-CGCTCGA--CGACCCTCCTGGCCCCGCCATGGAAGG-AAAACTGCT
AT-GCTAGGTAACG---------AGGGAAGAGGCAGGAGGCGCTCGTTCGCCGAGCGCTGCGCGCGA-------------
-----CGCGGCTTAACGACGGATCA-TCATCATGATCGATCCTATACTACTGGGGAGGTGCGGG--------TTGGATGT
TTCCCATTGT------------GTGCGTGCGTTCGTCTGGGC--------TTGGATGCCCTGCTATAGTGTTGGTGTGCT
CAGATCAGATGTATCTCTCGTCGAGCAGGGCTTGTACCTTTTACTTTTATTTACAGCTAGTA--ATAATAACGAAAGAAT
CCAGCGTTTTCTTTGTTCTAAACA--------------------------------------------------------
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>chr3A_499
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----------------------------------------------------------------AATTA-ATTTTAGTGC
GCACCAAACCGAGAAGAGCTAGGGCAACTTCGCCGTTGACAACGAACCCAACACGACCTGGCTTATACTCCTCTCAAAAG
TCCTAATTGCCACCAACTTTTT-------ATTAAACGTGCGTCGCTCTCGCTG-GCTCATGTCGACCGGGCGAGGCACGG
CAACATCAGCTCGAGAAGAGTAAACAAAAATATCAAGTCGACTCTCTCAAAAAAAAATCAAGTCGACCACGTAGGAAGGA
AGCGACGAACCCGCGGCGCCATTTCCTGCGT-CCGTCGCGTCGGCACGTGCCGGTTCGCCGCGCTGAGTGACGGCGCCCA
AAAGCCACCGAATCTTTGACAAAACCCCGTGCCGTTGGGCCCTTTTTACTGCGCCTGCCCCTCCCCGTCTCCCTTTATAT
ACGGGCCCTGGCCTC--TCTCGTTCCCCCACACCACC---AAAGCCCACCAAGCCTCAAACGCCCACGTTGGAGCAGT--
-AGCAGCAGCACAGAGCCAGAGCCAACCAGCCGTTCGATCGTCCAACGCAGACGGATCCGATGGCCCTCGCTCTCTCCGG
CTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCGGCCACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGG
CGATGAGGCGCGGCGCCGCGGCGGCCGCGGACGGGAAGGCGGCCAGGGAGGCCGAGAAGGCCGCGGCCGACGCCTCGTGG
GTGCCCGACCCCGTCACCGGCCACTACCGCCCCGCCAACCGCGCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCA
CCTCGGACAGACCTACGCACGGGCCTGAAGCCC-GGCTCCACTCGACCCTCCTGGTCCCGCCATGGAAAACAGAACTGCT
ACCGCTACGTAACGAGGGAAGATAGGGAAGAGGCAGGCGGGGCTCGTTCGCCGCGCGCGGCTGT----------------
------GCGGCTTCACGACGCATC--TCATCATCATCGATCCTATACTACGGGGGAGATGCGGCCTGGACGTTTGGCTGT
TTCCCATTGTGTT--TGTGTGCGTGCGTGCGTGCGTCTGGGC--------TTGGA---------------------TGCT
CAGATCAGATGTATTTTTGGTCGAGCAGGGCTTGTACCTTTTACTTTTACAGTTA---GGTATTATAATAACAAAAGAAT
CCAGCGTTTTTCTTGTTCCTA-----------------------------------------------------------
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AACAAATGTT----------------------------------------------------------------------
------------------------------
>chr3D_553
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----------------------------------------AACGAAACAAGCACGACCTGGCTTATACTCCTCTCAAAAG
TCCAAATTGTCACCAACTTTTAATATTTAATTAAACGTGCGTCGCTCTCGCTG-GCTCATGTCGTCCCGGCAATGCACGC
CAACGTCAGCTCGAGAAGAGTAAACAAAAATATCAG-------------------------GTCGACCACGTAGGAAGGA
AGCGACGAACCAGCGGCGCCATTTCCTGCGTCCCGTCGCGTGGGCACGTGCCGGTTCGCCGCGCCGAGTGACGGCTCCCA
AAAGCCACCGAATCTTTGACAAAACCCCGCGCCGTTGGGCTCTTTTTACCCCGCCTACCCCTCCCCGTATCCCTTTAAAA
ACGGGCCCTGGCCTCTCTCTCGTCCCCCCACACCACC---AA---------AGCCTCAAACGCCCACGTTGGAGCAGT--
-AGCAGCAGCAAAGAGCCGGAGCCCTCCAGCCGTCCGATCTTCCGACGCAGACGGATCCGATGGCCCTCGCTCTCTCCGG
CTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCGGCCACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGG
CGATGAGGCGCGGCGCCGCGGCGGCCGCGGACGGGAAGGCGGCCAGGGAGGCCGAGAAGGTCGCGGCCGACGCCTCGTGG
GTGCCCGACCCCGTCACCGGCTACTACCGCCCCGCCAACCGCGCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCA
CCTCGGACAGACCTACGCACGGGCCTAAAGCCC-CGCTCCGCTTGACCCTCCTGGTCCCGCCATGGAAAACAAAACTGCT
AC-GTTACGTAACG---------AGGGAAGAGGCAGGCGTGGCTCTTTCGCCGAGCGCCGCGCGCCGC------------
----GCGCGGCTTAACGACGCATCAATCATCATCATCGATCCTATACTACGGGGGAGATGCAGCCTGGGTGTTTCCCAT-
-------------TGTGTGTGCGTGCGTGCGTGCGTCTGGGCAGCTGGGCTTGGATGCCCTGCTATAGTGTTGGTGTGCT
CAGATCAGATGTATTTCTCGTCGAGCAGGGCTTGTACCTTTTATTTTTA-------------------------------
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>chr4D_1700
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----------------------------------------------------------------------TACGAAAATA
CTAACGCCCACATGTGTGATAGTTTT-GCAACTCATTCACACGCGTGGATCACCGTCCAGTCGAGTTTGCACGAATCTTG
ACACATTGAGGCAGAATTTGCGTGCCACGTAGGACGGGGCTGGTG--TGTGCGCGTTGGAGAGTTCGCCCACACACCCC-
GCAGCACGCGGTTTGCTAGCTGCGCTGTGTGGGCGAACTAGTTTCTGTCCGCACAACCACCACCTAGT-CCACGCGCGTG
TGGGCGAACTGCTTTTCGCCCACACAACATTCGTACGTTGTTGGATGGCAACTGCAGT-------TACGCGTAC--GTGG
CAACTAGGTAAACACACATGGCAACTATGATTCGTTGCTAGACGGCAACTGC--AGTTGCGTGTACGTGGCAACCAGATA
AACACACATGGCAACTATGATTAACCATACAT-GCAACTATGGTTGGGACACACCTGACAACTAGGTAAACACACATGGG
AACTACTGTTTGACCGTATGTGGCAAGTAGTTAATCACACACGGCAACTATGGTTTGATTGCACGCGGCAACTACCATAA
ATTAAACA-TGGGAACTATAGTTAACCAAA
>chr4D_1700
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----------------------------------------------------------------------TACGAAAATA
CTAACGCCCACATGTGTGACAGTTTT-GCAACTCGTTCACACGCGTGGATCACCGTCCAGTCGAGTTTGCACGAATCTTG
ACACATTGAGGCAGAATTTGCGTGCCACGTAGGAC-GGGCTGGTG--TGTGGGCATTGGAGAGTTCGCCCACGCGCC-CC
GCAGCACGCGGTATGCTAGCTGCGCTGTGTGGGCGAACTAGTTTCTGTCCGCACAACCACCACCTAGT-CCACGCGCGTG
TGGGCGAACTGCTTTTCGCCCACACGACATTAGTACGTTGTTGGATGGCAACTGCAGT-------TACGCCTAC--GTGG
CAACTAGGTAAACACACATGGCAACTATGATTCGTTGCTAGACGGCAACTGC--AGTTGCGCGTACGTGGCAACCAGATA
AACACACATGGCAACTATGATTTACCATACAT-GCAACTATGGTTGGGACACACCTGACAACTAGGTAAACACACATGGC
AACTACTGTTTGACCATATGTGACAAGTAGTTAATCACACACGGCAACTATGGTTTGATTGCACGCGGCAACTACCATAA
ATTAAACA-TGGCAAATATAGTTAACCAAA
>chr4D_1700
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----------------------------------------------------------------------TACGAAAATA
CTAACGCCCACATGTGTGACAGTTTT-GCAACTCATTCACACGCGTGGATCACCGCCCAGTCGAGTTTGCACGAATCTTG
ACACATTGAGGCATAATTTGCGTGCCACGTAGGACGGGGCTGGTG--TGTGCGCGTTGGAGAGTTCGCCCACACGCCCC-
ACAGCACGCGGTTTGCTAGCTGCGCTGTGTGGGCGAACTAGTTTCTGTCCGCACAACCACCACCTAGT-CCACGCGCGTG
TGGGCGAACTGCTTTTCGCCCACACGACATTCGTACGTTGTTGGATGGCAACTGCAGT-------TACGTGTAC--GTGG
CAACTAGGTAAACACACATGGCAACTATGATTCGTTGCTAAACGGCAACTGC--AGTTCCGCGTACGTGGCAACCAGATA
AACACACATGGCAACTATGATTAACCATACAT-GCAACTATGGTTGGGACACACCTGACAACTAGGTAAACACACATGGC
AACTAATGTTTGACCGTATGTGGCAAGTAGTTAATCACACACGGCAACTATGGTTTGATTGCACGCGGCAACTACCATAA
ATTAAACA-TGGCAACTATAGTTAACCAAA
>chr4D_1700
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----------------------------------------------------------------------TACGAAAATA
CTAACGCCCACATGTGTGACAGTTTT-GCAACTCATTCACACGCGTGGATCACCGTCCAGTCGAGTTTGCACGAATCTTG
ACACATTGAGGCATAATTTGCGTGCCACGTAGGACGGGGCTGGTG--TGTGCGCGTTGGAGAGTTCGCCCACACGCCCC-
GCAGCACGCGGTTTGCTAGCTGCGCTGTGTGGGCGAACTAGTTTCTGTCCGCACAACCATCACCTAGTCC-ACGCGCGTG
TGGGCGAACTACTTTTCGCCCACACGACATTCGTACGTTGTTGGATGGCAACTGCAGT-------TACGCGTAC--GTGG
CAACTAGGTAAACACACATGGTAACTATGATTCGTTGCTAGACGGCAACTGC--AGTTGCTCGTACGTGGCAACCAGATA
AACACACATGGCAACTATGATTAACCATACAT-GCAACTATGGTTGGGACACACCTGACAACTAGGTAAACACACATGGC
AACCTCTGTTTGACCATATGTGGCAAGTAGTTAATCACACACGGCAACTATGGTTTGAATGCACGCGGCAACTACCATAA
ATTAAACA-TGGCAACTATAGTTAACCAAA
>chr1D_1704
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--------------------------------------------------------------------------AAAATA
CTAACGCCCACACGTGTGGCAGTTTT-GCAACTCGCCCACACGCGTGGATCACCGTCCAGTCGAGTTTGCACGAATCTTG
ACACATTGAGGCGGATTTTGCATGGCACGTAGGACGGGGCTGGTG--TGTGGGCATTGGGGAGTTCGCCCACACGCCCT-
GCAGCACGCGGTTTGTCGGTTGTGCTGTGTGGGCGAACTAGTTTCTGCCCACACAGTCATCACCTAGT-CCATGTGCGTG
TGGGCGAACTGCTTTTCGCCCACACGACACGTGTACGTTGTTGGATGGCAATTGCAGT-------TACGCGTAC--GTGG
CAACTAGGTAAACACACATAGCAACTATGATTCGTTGCTAGACGGCAACTGC--AGTTGCGCGTACGTGGCAATCAGATA
AACACACATGGCAACTGTGATTAACCATACATTGCAACTATGGTTGGACCACACGTGGTAACTAGGTAAACACACATGGC
AACTACTGTTTGACCATATGTGGCAAGTAGTTAATCACACATGGCAACTATGGTTTGATTACACGCGGCAACTATCATAA
ATTAGACA-TGGCAACTATAGTTAACCAAA
>chr1D_1704
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--------------------------------------------------------------------------AAAATA
CTAACGCCCATACGTGTGGCAATTTTCGCAACTCGCCCACACGCGTGGATCACCGTTCAGTTAAGTTTGCACGAATCTTG
ACATACTAAGGCAGTTTTCGCGTGCCACGTAGGACGGGGCTGGTG--TGTGGGCGTTGGAGAGTTCGCCCACACGCC-C-
GCAACACATGGTTTGCCAGCTGCGCTGTATGAGCGAACTAGTTTCTGCCCACACAGCCACCACCTAGT-C-ACGCGCGTG
TGGGCGAACTCCTTTTCACCCCCATGACACTCGTACGTTGTTGGATGGCAACTGCAGT-------TACGCGTAC--GTGG
CAACTAGGTAAACACGCATGGCAACTATGATTCGTTGCTAGACGGCAACTGC--AGTTGCGCGTACGTGGTAACCAGATA
AACACACATGTCAACTCTGATTAACCATACATGGCAACTATGGTTGGACCACACGTGACAACTAGGTAAACACACATGGC
TACTAATGTTTGACCATATATGGCAAGTAGTTAATCACACACGACAACTATGGTTTGATTACACGCGGCAACTACCATAA
ATTAGACA-TGGCAACTATAGTTAACCAAA
>chr6D_1705
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---------------------------------------------------------------------------AAATG
CTAACGTCCACACGTGTGGCAGTTTT-GTAACTCGGCCACATATGTGGATCACCGTCCAGTTGAGTTTGCACAAATCTTG
ACAAATTGAGGCAGAATTTGGGTGGCACGTAGGACGGGGCTGGTG--TGTGGGCGTTGGAGAGTTCGCCCACACGCCTC-
GCAGCACGCGATTTGCTGGCTGCGCTGTGTGGGCGAACTAGTTTCTGCTCACACAGCCACCACCTAGT-CCACGCGCGTG
TGGGCGAACTGCTTTTCGCCCACATGACACTCGTATGTTGTTGGATGGCAACTGCAGT-------TACGTGTAC--GTGG
CAACTAGGTAA-CACACATGGCAATTATGATTCGTTGCTAGACGGCAACTGC--AGTTGTGCGTACGTGGCAACCAGATA
AACACACATGGCAACTGTAATTAACCATACATGGCAACTATGGTTGGACCACATGTGGCAACTAGGTAAACACACATGGC
AACTACTGTTTGACCACATGTGGCAAGTAGTTAATCACACACGGCAACCATGGTTTGATTACACGCGGCAACTACCATAA
ATTAGACGTTGGCAACTATAGTTAACCAAA
>chr2D_1719
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-------------GTGTGGCAGTTTT-ACAACTCGCCCACACGCGTGGATCACCGTCCAGTCGAGTTTGCACGAATCTTG
ACACATTGAGACAGAATTTGCGTGCCACGTAGGACGGGGCTGGTG--GGTGGGCGTTGGAGAGTTCGCCCACACGCC-CC
ACGACACGCGGTTTGCCAGCCGCGTTGTGTGGGCGAACTAGTTTCTGTCCACACAGGCACCATCTAGT-CCACGCGTGTG
TGGGCGAACTGCTTTTCGCCCACACGACACTCGTATGTTGTTGGATGGCAACTGCAGT-------TACACGTAC--GTGG
CAACTAGGTAAACACACATGGCAACTATGATTTGTTGCTAGACGGCAACTGC--AGTTGCGCGTACGTGGCAACCAGATA
AACACACATGACAACTATGATTAACCATATATGGCAACTATGGTTGGACCACACGTGGCAACTAGGTAAACACACATGGC
AACTATTGTTTGACCATATGTGGCAAGTAGTTAATCACACACGACATCTACGATTTGATTACACACGGCAACTATCATAA
ATTAGACA-TGGCAACTATAGTTAACCAAA
>chr3D_1733
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----------------------------CAACTCGCCCGCATGCCTGGATCATCGTTCACTGTCTATTGCACGAATCTTG
ACACGAAAAGGTGGATTTGGTGTGCCACATAGGACGGAGCTGGTG--TGTGGGCGTTGGAGAGTTTGCCCACACGCC-C-
GCACCACGCTGTTTGCCAGCTGCGCTGTGTGGGCGAACTAGTTTCTGCCCACACAGCCACCACCTAGT-TCATGCGCGTG
TGGGCGAACTACTTTTCGCCCACACGACACTCCTACGTTG-TGGATGGCAACTGCAGT-------TACGCGAACGTGTGG
CAACTAGGTAAACACACATGGCAACTGTGATTCTTTGCTAGACGGCAACTGC--GGTTGCGCGTACGTGGCAACCAGATA
AGCACACATGGCAACTGTGATTAACAATACATGGCAACTATGGTTGGACCACACGTGGCAACTAGGTAAACACACATGGC
AACTACAGTTTGATCATATGTGGCAAGTAGTTAATCACACACGGCAACTACGGTTTGATTACACGCGGCAACTACCATAA
ATTAGACA-TGGCAACTATAGTTAACCAAA
>SNPs
--------------------S--------------S-------S---------------------------------S--
S-----------------------------------------S-S------------------SS----S----------
-----------------------S---------------------------S----S-----------------------
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---------S-----------------S--------------------------S-------------------------
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------------------------------------------S-------S-----SSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------SSS------S-------------S------------------S-----------------------
--S-----------------------------------------------S-------SS-SS-----S-----------
---------------------------------------------S-----SSS--S-----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S-----S------------------
---------S--------------------------SS------------S------------------S-S--------
----S--S-----------------S-----------SSS-------------------------------------SSS
S----S------S--------------------------SS------------------------S--------------
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----------------------------------------------S---------------------------------
------S-----------------------S--S----------------------------------------------
------------SS---------S------S---------------------------S----SS--SSSSSSSSSSSSS
SSSS------------------------------S-----------------S---------------------------
------------S------S-----------------S----------------------------------SS------
----------------------------------------------------S-----------S---------------
-S------------SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------
--------------------------------------------------------------S--------S--------
------------SS-------------------------------SS-----S-------------SS-SSSSS------
----------------------------------S---------------------------------------------
----------------------------------------------------------SSSSSSS---------------
-------S-------------------------------S-----S-----SSS-------S----S---------S---
--------------S------------------------S------S---------------------------------
--------------------------S--------------------------------------S-----S--------
------------------------------
>forward_1663
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAAGCAACCACGACTACGGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_3254
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TAGTTGCGGGTACATGGCAA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
