>input_sequence_85004
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------------------ATGTCTGGCGATGTCCAATCTGAAGTCCCCCAGCCACCTTCATCTT---CTGTAAAGCCCGC
CTCAACTTCGTGCCGAAAGAAGAACTCCGG---CACCTCGTTTGTCACGCAACTGAGGGATCACTTCCACGAGTTTATTC
ATGCCTCCATGGACGAACACAGGACATGCTTAACAAACACTGTCAAGAAATTGTTTGCGATGTCAAAGGGAGTCGCAGAG
GGGACTGCTGGGGCAAAAGAAGCTGGAGCTGAAAGCGTTTTGCCACTTCAGAGTGAAGTGTCACGGTAG-----------
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>chr1A_1_TraesCS1A01G221500
TTAGCCAGTTATAAACTTGAGCCACCATGGCAGCAATCTTTGTGTTAATAGTCAATAAGCTCAGCTGCATTAACTTCT--
-TTAGTTTTGTCAAGTGGAGGAATTCCTCTTTCACATGCTTCCTTCTTTGATACATCAGATCACACAATTACACTTGCAA
GTTTTTGTTTGGTGGCAATTTTGTTTAGGGTCTTTAGGAATTAAGAACCATTGTGAATATATGTGTTGCACTTTGATGCT
TCTTTTTTTATTGCAATCAATAATCGGTGGTCACCTTAATGTACTCCTGTCGGTGTACATATTGGTTCACCTGTTAGTGA
AGCAATCACCAAGATAACAAATGTATCTTCTGAGCAGTATGTTCCACCTTAACTGATGTTTGTGCTTGTGCTTTGGTGTT
TTTGTCTTTAGAGTACC-AGTATTTGATTGTGGATTGCCTGCTAGTTTGTTAGGAAGTTTGTACTGTCTACATTTGTTTT
ACAGAACTGGTGTGCAATTGTTGAGAGGAGAGTCTTCTCTCTGTATAATTATATCATGCGCCCTTCCCGAAACAACCTTA
TGCTAACACATGGTGGCTCATCTTTTGAAGCATACACACACACAATTAGTCAAGGATATCACATGTTGCTCTATAGACTA
CGATATTGGTGCCTGTCCCTTCA---------------------------------------------------------
--------------------------------------------------------------------TACATGTAAAAC
TGGAATCATGTGGTGTTTGGTTAGAGGTTATATGCA---TTTTTTTGTTTATAGTAGCTGGAAGTATTCTAATGCTTAGG
ATTTGGATTCATTATTTTTACCATTGACTAGTATATATACATTGAAAAAGATGATTGATTTCTTTTGTTGTACATATTCT
CTGTGAAACTCAAATGTAAAATTAGTTTTTTT----TTT-CAAATAGGCTGCTATTTTTCTTTTCTTTTTTAAGGGGGAC
TGCTATTTTTCATTGGTAT-TCATCATGATGGATTGAATTGCAGACTTTTGTCCATTTTGTCTCACTTTAGTTTCAAATA
TATGCAGTGTCATCCACAATGTCTGGCGATGTCCAATCTGAAGTCCCCCAGCCACCTTCATCTT---CTGTAAAGCCCGC
CTCAACTTCGTGCCGAAAGAAGAACTCCGG---CACCTCGTTTGTCACGCAACTGAGGGATCACTTCCACGAGTTTATTC
ATGCCTCCATGGACGAACACAGGACATGCTTAACAAACACTGTCAAGAAATTGTTTGCGATGTCAAAGGGAGTCGCAGAG
GGGACTGCTGGGGCAAAAGAAGCTGGAGCTGAAAGCGTTTTGCCACTTCAGAGTGAAGTGTCACGGTAGAAACATA----
---TGATGCAATGTCAGTTCTGTGTAGTGAAATTTTGTCGCTGTCACCAAGCATAATCCTCGAGTCAAACAGTAGA--GT
TTCAAATTTTTGGTGAATATATTATGTACAGTTACATCATGCAATCATGCTGTCGTCATTTGACTGTCTATGCAAGAAGA
GAAACATTTCTTTCTCTTCTATCTA-TAGATAGAATCAGGGTACCCAACAATTGTTTTTTCTGTA--TTCTGATCTTTTG
CCTATAAAAACGATGTCTTTGTCTATCTACAAGTGCGTCACGAGTATGACCAGGACCGCACAAAGAACTACCCCAGCCGA
GGAAGCAGCCCAACTGCTCCCCGCCGGCGAGCCGGAGGTGTCCGTCGCGTCGTAGAGGGAGCTGAGCCTGAAATCCGGGT
TGGACCCGTACAGCAGCTGCACGCCTTCGACGTCGTCGACGGTGAGGTCGGCCTTCTTCTCCAGCGGTTTGATGCTCGGG
TACATGACGGCCTGCGGCGAAGTCGAGTGTCCGAGCCCGAGGACGTGGCCGATCTCGTGAGTCGCCACGGACTCCAGGTC
GATGGCCGCGGAAGCTTTTGTTTCGCCAGCGAAGTCCACCGCCCACCGCTCCGCGGCGTCGAGGTGGAGCCGCCCGTTCT
TGGGGGAGAAGGCGTGGCCGAGCACGCCGAGCGGCCCGTCGAAGGGCACCCCGTCGCCGTGGCTGCCCTCGTAGAACCCC
ACCTTGATGTCGGCCTCGTCGTAGTCGTCCGTCTCGACGAACGCCACGGGGATGACCCGCGCCCACCGCTCGAACGCGCG
CCGGAACACGGCCCTCACGTCGTTGGGCGCCAGGTAGCCGACGGTGGCCGTCGGCGACACGGCGTACGTGAGCACAACCG
GGTCCGGGTCCGACCGCCGCGTCCACCGCGGCTTGCCCTTGAAGAAGGTGAACCGGCTGACCGCGCCGCCGTGCTCCGGC
GAGACGGACGCGCCGTGGTCGTCCTGGACGCCGCAGCGCGG
>chr1D_1
TTAGCCAGCTATACACTTGAGCCACCATGGCAGCATTCTTTGTGTGAATGGTCAATAAGCTCACCTGCGTTAACTTGTTT
ATTAGTTGTGTCAATTGGAGGAATTCCTCTTTCACATGCTTCCTTCTTCGATACATCAAATCACGCAATTGCACTTGCAT
GTTTTTGTTTGGTGGCAATTTTGTTTAGGGTCTTTAGGAATTAAGAACCATTGTGCATATATGTGTTGCACTTTGATGCT
TCTTTTTTTATTGCAACCAATAATCGGCGGTCACCTTAATGTACTCCTGTCGGTGTACATATTGGTTCACCTGTTAGTGA
AGCAATCAGCAAGATAAGAAATGTATCTTCTGAGCAGTATGTTCCACCTTAACTGATGTTTGTGCTTGTGCTTTGGTGTT
TATGTCTTTAGATTACC-AGTATTTGATTGTGGATTGCCTGCTAGTTTGTTAGGAAGTTTGTACTGTCTAGATTTGTTTT
ACAAAACTGGTGTGCAATTGCTGAGTGGAGAGTCTTCTCTCTGTATAATTATATCATGCCCCCTTCCTGAAACAACCTTA
TGCTAGCACATGGTGGCTTATCTTTTGAAGCATACACACACACAATTAGTCCAGGAAATCACATGTTGCTCTGTAGGCTA
CAATATTGGTGCCTGTCCCTTCATACCCCTTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGAGATGAATCTAG
ATGTATTTTAGTTCTAGATACATCCCTTTTTATCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTACATGTAAAAC
TGGAATCATGTGGTGTTTTATTAGAGGTTATATGCA--TTTTTTTTGTTTATAGTAGCTGGAAGTATTCTAATGCTTAGG
ATTTGGGTTCATCATTTTTACCATTGACTAG--TATATACATTGAAAAAGATGATTGATTTCTTTTGTTGTACACATTCT
CTGTGAAACTCAAATGTAAAATTAGTTTTTTT----TTTTCAAATAGGCTGCTATTTTTCTTTTCTTTTTTAAGGGGGGC
TACTATTTTTCTGTTAGTGCTCATCATGATGGATTGAATTGAAGACTTTTGTCCATTTT-TCTCACTTCACTTTCAAACA
TATGCAGTATCATCCACAATGTCTGGCGGTATCAAGTCTGAAGTCCCCCAGCCATCTTCATCTCCTCCTGTGAAGCCCAC
CTCAACTTCGTGCCGAAAGAAGAACTCCGG---CACCTCGTTTGTCACGCAACTGAGGGATCACTTCCATGAGTTTATTC
ATGCCTCCATGGGCGAACACAGGACATGCTTAACAAACACTGTCAAGAAATTGTTTGCGATGTCAAAGGCTGTCGCAGAG
GGGACCGCTGGGGCAAAAGAAGCTGGAGCTGAAAGCGGTTTGCCACTACAGAGTGAAGTGTCACGGTAGAAACATA----
---TGATGTAATGTCAGTTCTCTGTAGTGAAAGTTTGTCGCTGTTACTAATCATAATCCTCAAGTCAAACAGTAGAGAGT
TTCAAATTTTTGGTGAATATATTATGTACAGTTACATC--------ATGCTGTCGTCTTTTGACTGTCTATGCAAGAAGA
GAAACACTTCTTTCTCTTCTATCTAATAGATAGAATCAAACTACCCAACACTTGTTTTTTCTGTA--T-CTGATCTTTTG
CCTATAAAAACGATGTCTTTGTCTATCTACAAGTGCGTCACGAGTATGACCAGGACCGCACAAATAACTAACCTAGCAGA
GGAAGCAGCCCAACTGCTCCCCGCCGGCGAGCCGGAGGTGTCCGTCGCGTCGTAGAGGGAGCTGAGCTTGAAATCCGGGT
TGGACCCGTACAGCAGCTGCACGCCTTCGACGTCGTCGACGGTGAGGTCGGCCTTCTTCTCCAGCGGCTTGATGCTCGGG
TACATGACGGCCTGCGGCGAAGTCGAGTGTCCGAGCCCGAGGACGTGGCCGATCTCGTGAGTCGCCACGGACTCGAGGTC
GATGGCCGCCGAGGCTTTTGTTTCGCCGGCGAAGTCCACCGCCCACCGCTCGGCGGCGTCGAGGTGGAGCCGCCCGTTCT
TGGGGGAGAAGGCGTGGCCGAGCACGCCGAGCGGCCCGTCGAAGGGCACCCCGTCGCCGTGGCTGCCCCCGTAGAACCCC
ACCTTGATGTCGGCCTCGTCGTAGTCGTCCGTCTCGACGAACGCCACGGGGATGACCCGCGCCCACCGCTCGAACGCGCG
CCGGAACACGGCCCTCACGTCGTCGTCCGGCAGGTAGCCGACGGTGGCCGTCGGCGACACGGCGTACGTGAGCACGACCG
GGTCCGGGTCCGACCGCCGCGTCCACCGCGGCTTGCCCTTGAAGAACGTGAACCGGCTGACCGCGCCGCCGTGCTCTGGC
GAGACGGACGCGCCGTGGTCGTCCTGGACGCCGCAGCGCGG
>chr1B_336
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------------------AAATGTATCTTCTAAGCAGTATGTTCCACCTTAACTGATGTTTGTGCTTGAGCTTTGGTGTT
TGTCT-TTTAGAGTACCAAGTATTTGATTGTCGATTGCCTGCTAGTTTGTTAAGAAGTTTGTACTGTCTAGATTTGTTTT
ACAAAACTGGTGTGCAATTGCTGAGTGGAGAGTCTTCTGTCTGTATAATCATATCATAGTCCCTTCCTGAAACAACCTTA
TATTAACACATGCGGGCTCATCTT-----------------------------------------TTGCTCTATAGACTA
CAATATTGGTGCTTATCCCTTAATA-------------------------------------------------------
----------------------------------------------------------------------------AAAC
TAGATTCATGTGGTCTTTGTTTAGAAGTTATATGCATTTTTTTTTTGTTTATAGTAGCTGGAAGTATTCTAATGCTTAGG
ATTTGGATTCATCATTTTTACCATTGACTAT--TATATACATTGAAAAGGATGATTGATTTCTTTTGTTGTACATATTCT
CTGTGAAACTCAAATGTAAAATTAGTTTTTCTTTTCTTTTCAAATAGGCTGCTATTTTC---------------------
----------CTGTTAGTGCTCATCAT-ATGGATTGAATTGCAGACTTTTGTCCATTTTGTCTCACTTTAGTTTCAAATA
TATGCAGTGTCATCCACAATGTATGGCGATGTCCAATCTGAAGTCCCCCAGCCATCTTCATCTC---CTGTGAAGCCCGC
CTCAACTTCGTGCCGAAAGACGAACTCCGTCAACACCTCTTTTGTCACGCAACTAAGAGATCACTTCCACGAGTTTATTC
ATGCCTCCATGGACGAACACAGGACATGCTTAACAAACACTGTCAAGAAATTGTTTGCGATGTCAAAGGCCGTCGCAGAG
AGAACCGCTGGGGCAAAAGAAGCTGGAGCTGAAAGCGTTTTGCCACTTCAGAGTGAAGTGTCGCGGTAGAAACATACTCC
GTATGATGCAATGTCAGTTCTCTGTACTGAAAGTTTGTCGCTGTCACTAAGCATAACCCTCAAGTCAAACAGT--AGAGT
TTCAAATTTTTGGTGAATATATTATGTACAGTTACATC--------ATGCTGTCGTCTTTTGACTGTCTATGCAAGAAGA
GAAACACTTCTTTCTCTTCTATCTA-TAGATAGAATCAGGCTACCCAACACTTGTTTTTTTCTGTATT-CTGATCTTTTG
CCTATAAAAACGATGTCTTTGTCTATCTACAAGTGCGTCACAAGTATGACCAGGACCGCACAAAGAACTAACCCAGCCGA
GGAAGCAGACCAACTGCTCCCTGCCGGCGAGCCGGAGGTGTCCGTCGCGTCGTAGAGGGAGCTGAGCCTGAAATCCGGGT
TGGACCCGTACAGCAGCTGCACGCCTTCGACGTCGTCGACGGTGAGGTCGGCCTTCTTCTCCAGCGGCTTGATGCTCGGG
TACATGACGGCCTGCGGCGAAGTCGAGTGTCCGAGCCCGAGGACGTGGCCGATCTCGTGAGTCGCCACGGACTCAAGGTC
GATGGCCGCCGAGGCTTTCGTTTCGCCGGCGAAGTCCACCGCCCACTGCTCAGCGGCGTCGAGGTGGAGCCGCCCGTTCT
TGGGAGAGAAGGCGTGGCCGAGCACGCCGAGCGGCCCGTCAAAGGGCACCCCGTCGCCGTGGCTGCCCTCGTAGAACCCC
ACCTTGATCTCGGCCTCGTCGTAGTCGTCCGTCTCGACGAACGCCACGGGGATGACCCGCGCCCACCGCTCGAACGCGCG
CCGGAACACGGCCCTCACGTCGTCGGCTGGCAGGTAGCCGACGGTGGCCGTCGGCGACACGGCGTACGTGAGCACGACCG
GGTCCGGGTCCGACCGCCGCGTCCACCGCGGCTTGCCCTTGAAGAACGTGAACCGACTGACCGCGCCGCCGTGCTCTGGC
GAGACGGACGCGCCGTGGTCGTCCTGGACGCCGCAGCGCGG
>SNPs
--------S----S---------------------S---------S---S-------------S----S-------S---
-------S------S---------------------------------S---------S-----S-----S--------S
-------------------------------------------------------S------------------------
----------------S----------S----------------------------------------------------
--------S--------S--------------------------------------------------------------
-S--------------------------------------------------------------------S---------
---S----------------S----S---------------------------------S-------S------------
---------------------------------------------------S----S-----------------------
-S------------------------------------------------------------------------------
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-------------------S------------------------------------------------------------
------------S------------------SS-----------------------------------------------
------------------------------------------------------------------------------S-
-S---------SS-SSSSS-------------------------------------------------------------
------------------------------------------------------S--------S-------S--------
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---------------------------------------------------------------------SS---------
-----S--------------------------------------------------------------------------
---------------------S----------S--------------S-------------S------------------
--------------------------------------SSSSSSSS-----------S----------------------
------S---------------------------------S---------S-----------------S-----------
----------------------------------------------------------------------S---------
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-------------------------------------------------------------------S------------
--------------------------------------------------------------------------S-----
---------S--S--------------S-----------------------S----------------------------
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-----------------------S--S--S---------------------------------------------S----
----------------------------------------------S-----------------------------S---
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>forward_46
------------------------CCATGGCAGCAATCTTTGTGTT----------------------------------
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>reverse_1184
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---------------------------------------------------------------TCTGTAAAGCCCGCCTC
AAC-----------------------------------------------------------------------------
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>forward_1175
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-----------------------------------ATCTGAAGTCCCCCAGCCAC-------------------------
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>reverse_2013
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------------AGCTTTTGTTTCGCCAGCG-------------------------------------------------
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