>input_sequence_85000
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--------------------------------------------ATGGTGCTCGCTGCCTCTTTGAATAGGTGATCCCCC
CTTTATCTTT-TCCCCTTACCCTCCCTTTTTCTCAGCCTCGCTGCTGCTCATCCTCCAATCTCTTCTATTCAGGCAAGGT
GGATTCAACACACACAG--TCTAGGAAGGCCACGGGATGACTGTG--ATGCAGTGAGGGCAACAGCGACAATGGAGGAAT
CTATGCTCGTCGAGTTTCCACCCCAACGGCTGCCTCCGGAGCAGGAGAGTTCAAGGACATCTCCCAGTTCATGGGAGAGA
CTCGAGCACAGGTAA-----------------------------------------------------------------
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>chr6A_1_TraesCS6A01G144300
TGATGTCGGGCTCCACCATTCCCGCCCCTCGTCCTCACGCGGCCTCTCTTGGTCACCGGCGCTGCAGTTGTGCGGGGCGT
GAGGAGAGCGAGGAGAGGGAGGGGAAGAGTGGGAGGCGCGAGGACGGACGCCAGGCATGCGGTGCTGGTCGTGGAGGACT
ACATGCCCCCTCTTGCTCGCTTTGCGTACGCGTCGCTGCTGTTCTTGCAACGGTGCCGCTGCTGTGGAGGGCTTGGTTTA
AGGTATGCCGTTCTTCTCCCCCATTTATTTGTTGTTCAATTTCTTGCCTATTGGCGGCCTCTGTTCTTTGATTTGTCCAT
GATTCAAGGGATAAAGAGATTCTTGATTTTCTTTTGTGTGTGCAGCTTGTTTATGGCGGGATGGGGAGGGCATGAGGCAT
CATCGCCAGATCGCGAAGGATGTTACCAAGGTGAGCGCCCATCTGCTCGGCTCCTCGGTGTCCCTTGTTTGGAGATGACT
CTCCAGCCAGGCGGGTTGTCCGGTGTTTGACTTTTTCCTCCATTTGATGATTATGATGTAGCTGACCGGGAAGATACCTC
AAGTTGCTATGTATTAGTTGTGACTTGACTGGCTTCAGTCCAGTAGAGAACACAACTAATTTGCACCTCCTGAAATATAA
TTACTATTTATGATTTTGGTATGTAGTAGCTTTGATTTGGCTGATTTCAAGTCATGAACATGAGTAGGATGATGTATTAT
CCATGACCATGGGAAGGCGGTATTTTCTGTTATAAAATTAGCGTACTGGTAAAAAAATATTAGTCATAAAATGATTTATT
GAGCAATTACCTGAGAAGTGCAGTGGGGACTACGCTCCGGTCGCGGCGG-GGTGCAGCCGCGGGGAAGACAAACTTGGTC
CGTCGTCCGTCTTCGCCTCTCCGCCCCGTCCTTGCTGCCTCCATGGCCAAGCGTAC---GTATTTTTTTCCTCTTCCTCC
ATGGCCCTCGTTGCCGTCGGGATCTCGAGGAACAGGTGACCTCCATGGTGCTCGCTGCCTCTTTGAATAGGTGATCCCCC
CTTTATCTTT-TCCCCTTACCCTCCCTTTTTCTCAGCCTCGCTGCTGCTCATCCTCCAATCTCTTCTATTCAGGCAAGGT
GGATTCAACACACACAG--TCTAGGAAGGCCACGGGATGACTGTG--ATGCAGTGAGGGCAACAGCGACAATGGAGGAAT
CTATGCTCGTCGAGTTTCCACCCCAACGGCTGCCTCCGGAGCAGGAGAGTTCAAGGACATCTCCCAGTTCATGGGAGAGA
CTCGAGCACAGGTAAGC---TC-TTTCTTTTCCTTTCCGTATCTTCCCATGCTGACATGGCCTCGTCTCTCTAATGCATG
TCTTCCTAA-TTTTTTGTTGTTATGCAGATAGGGTTTGGGTAGAGCTTGATTCCACTCCCACCGAGCATACATAGTTGCG
TTGTTGTACAAAGATCCCTTTTTGATGGTGCCATGGTGCCCCTCTCTAGGCAAGCTACAATCATCTTCCCTCATCATTTC
TTGTATTTTTTTTTAAAAAAATTACACACTGAGCTATAGA-TGGTCGGATCTGTTGTATGAGGCAGAACATGAATAAGAA
CAATTATCAACTTTTTAGTGTGCAGGTTTATGACTGCATTACAGATCTTTGTGGGTGCCTGTACATGCCATTTTAGTAGT
TCGATTATGTATTACCTGGAATTAGTCAAGTGATTAGTTATTACCTATGGTATTTGGACCTTATTTGGTTTGGTCAATTT
ATTAGTCATTGACCATCCA-TTTTTCTAAATTTATTGGTATTTTTAATATGCCATCTGTGTCAGCACACTAATGTCAAAT
CTGGTGGACAAGTCCCAGTCCATGGAGAAAACACTTGCACATGTGAGTTCTTTCTTGCTCTTCTTCATCTTTCCATGGTG
GCGTCCTTTTTTTCCATTCTTCTTAGTTTTCAAGGGCGTGTTTTGGGCTTTAGATTAATTTGGTTGTGCAGATGGTGTTA
CTACCATGTGGCCCTAAGACCAGTTCGATATTCATGCCCGAAATAAATACTCTCAGGTTTGCTGGTATGGTGTGCCTATT
ACCAGCTTTCATGATGGTTTTTACCATCGATAGGCCCTGGAAATGAGTTCTTTGCTTGCTGTTGTGTGCCTCTGTTCTGT
TCTGGGTTGCTTGATGCATTGATCTACTTTTGATTATTTCCTTTTTATGTTGTGGTGACAGTATTGGTACCTCATAATTA
TTGAAATGTGGTAAACTCCATTCTTTTATATTGCACCGTACTTTCCATAGTTTTGGCAAGCA
>chr2D_810
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---------CCTGAGAAGAGCGGCGGGGACTGCACTCCGGTCGCGGTGG-GGTGCAGCCGCGGGAAAGATGAACTAGGTC
CGCCGCCCGTCTTCGTCTCCTCGCCCCGTCCTTGTTGCCTCCATGGCCAAGCGCATGTAATTTTTTTCCTGGC--CCTCC
ATGGTACTCGTTGCCGGCGGGATCTCGAGGAACAGGTGACCTCCATGGCGTTCGTTGCTGCTCTGAATAGGTGAGCCCCC
CTCTCTCTTTTCCCCCTTGCCCTTTCTTTTTCTCGGCCTGGCTGCTGCTCATCCTCCAATCTCTTCCATTCAGGCAGGGT
GGACGCAACGCACACGATCTCTAGGAAGGCCACGGGATGACTGTGTGATGCAGTGAGGACAACAACA----------AAT
CTATCCTCGTTGAGCTCCCACCCCGACGGCTGCCTGCAGAGGAGGAGAGTTCGAGGACATCTTTCGGTTCATGGGGGAGA
CTCGAACACGGGTAAGC---TC-TTT----TCCTTACCTTGTCTTCCCATGATGAGCTGGGCTCATCTCTCTAATTCATG
TCTTCCTAATTTTTTTGTTGTTATGCAGATAGGGTTTGGGCGGAGGTTGATTCCCCTCCGACCGAGCGTACCGAGTTGCT
TTGCTGTACAAAGATCCCTTTTTGATGGTGCCATGGTGCTCCTCTCTAGGCAAGCTGCAACCATCCTCCCCCATCATTTC
TTGTATTTTCTTTTTAAAATTTTACGCACTGAGCTATAGGTTGATCAGATCTGTTGTATGAGTCAGAACCTGAATAAGAA
CAATTATCAACTTTTTAATGTGCAGGTTTATGACTGCATTACAGATCTTGGTGGCTGCCTGTACATGCCATTTCAGTAGT
TGGATTATGCATTACCTGTAATTTGTCAAGTGATTAGTTATTACCAATAGGATCTGGACCTTATTTGGTTTGGTCAATTT
A---GTCATTGAACATCCA-TTTTTCTAAATTTATTGGTATTTTTAATATGCCATTTGTGTCAGCACACTAATGTCAAAT
CT------------------------------------------------------------------------------
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>chr2B_810
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---------CCTGAGAAGAGCGGCGGGGACTGCACTCCGGTCGCGGTGGGGGTGCAGCCGCGGGGAAGACGAACTAGGTC
CGCTGCCCGTCTTCGCCTCCGGGCCGCGTCCTTGCTGCCTCCATGGCCAAGCGCAC---ATTTTTTTCATGTC--CCTCC
ATGGCGCTCGTTGCTGGCGGGATCTCGAGGAACAAGTGGCCTCCATGGCGCTCGCTGCCGCTCTGAATGGGTGAGT-CCC
CTCTCTCTTTTCCCCATTACCCTCCTTTTTTCTCTGCCTCGTTGCTGCTCATCCTCCAATCTCGTCCATTCAGATAGGGT
TGACGCAGCACACACGG--TCTAGGAAGGCCACGGGATGACTGTGAGATGCAGTGAGGGCAACAGCGACAACGGAGGTAT
CTATCCTCGTCGAGCTTCCACCCCGGTGGCTGCGTGCAGAGGAGCAGAATTCGAGGACATCTTCCAGTTCGTGGGGGAGA
CTCAAACACAGGTAAGCTCTTC-TTT----TCCTTTCCTTGTCTTCCCATGATGACCTGGGCTCATCTCTCTAATTCATG
TCTTCCTAAT-CTGTTGTTGTTATGCAGATAGGGTTTGGGTGGAGGTTGATTCCCCTCCCACAGAGCGTACAAAGTTGCG
TTGCTTTGCACAGATCTTTCTTTGATAGTTCCAAGGTGCCCCTCTCTAAGCAAGCTGCAACCATCTTCCCCCATAATTTC
TTGTATTTTCTTTTTAAAAGTTTACACACTACGCTATAGGTTGGTTGGATCAATTGTATGAGGCGGAACATGAATAAGAA
CAATTAAAAACTTTTTAATGTGCAGGTTTATGACTGCATTACAAATCTTGGTGACTGCCTGTACATGCCATTTCAGTAGT
TTGATTATGAATTACCTGCAATTAGTCAAGTGATTAGTTATTACCTGTAGTATCTGAACC--------TTTGTTCGATTT
A---GTCATTGACCATCCATTTTTTCTAAATGTATTGGTATTTTT-----------------------------------
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>chr5D_833
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--------------------------------CGCTCCAGTAGCGGTGG-GGTGCAGCTGCGGAGAAGACGGACTTGGTC
CGCCGCCCGTCTTCGTCTCCTCGTCCCGTCCTTACTGCCTCCATGGCCAAGCGCATGTATTTTTTTTCCTGTC--CCTCC
ATGGCGCTCGTTGCCGGCGGGATCTCGAGGAACAGGTGACCTCCATGGCGCTTGCTACCGCTCTAAATAGGTGATCCCCC
CTCTCTCTTT-CCCCCTTACCCTCCCTTTTTCTCTCCATCGCTGCTGCTCATCTTCCAATCTCTTCCATTCAGGCAGGGT
GGACGCAGGGCACACAG--TCTAGGAAGGCCATGTGATGAATGTGTGATGCAGTGAGGGCAACAACGACAATGGAGGAAT
CTATCCTTGTCGAGCTTCCACCCCGGCGGCTGCCTGCAGAGGAGGAGAGTTTGAGGGCATCTCCCAGTTCGTGGGGGAGA
CTCGAGCACATGTAAGATCTTTGTTT----TCCTTTCCTTATTTTCCCATGCTGACCTGGGCTCATCTCTCTAATTCATG
TCTACCTAAT-TTTTTGTTGTTATGCAGGTAGGGTTTGGGTAGATGTTGATTTCCCTCCCACTGAGCATACAGAGTTGCG
TTGTTGTACAAAGATCACTTTTTGATGGTGCCATGGTGCCCCTCTCTAGGCAAGATGCAACCATCTTCCCCCGTCATTTC
TTGTATTTTATTTTTAAAATTTTACA-ACTGAGCTATAGATTGGTCGGATCTGTTGTATGAGGCAGAACATCAGCAAGAA
CAATTATCAACTTTTTAGTATGCAGGTTTATGACTGCATTACAAATCTTGGTGGCTGCCTGTACATGCCATTTCAGTAGT
TCTATTATGCATT-------------------------------------------------------------------
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>chr3D_899
TCCGCCGCTCGTCTTCGT--------------------------------------------------------------
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--------------------------------------CTCCATGGCCAAGCGCATGTAATTTTTTTCCTGGC--CCTCC
ATGGTACTCGTTGCCGGTGGGATCTCGAGGAACAGGTGACCTCCATGGCGCTCGTTGCTGCTCTGAATAGGTGAGCCCCC
CTCTCTCTTTTCCCCCTTACCCTCTCTTTTTCTCAGCCTGGCTGCTGCTCATCCTCCAATCTCTTCCATTCAGGCAGGGT
GGACGCAGCGCACACGATCTCTAGGAAGGCCACGGGATGACTGTGTGATGCAGTGAGGACAACAACA----------AAT
CTATCCTCGTTGAGCTACCACCCCGACGGCTGCCTGCAGAGGAGGAGAGTTCGAGGACATCTTTCAGTTCATGGGGGA-A
CTCGAACACGGGTAAGC---TC-TTT----TCCTTACCTTGTCTTCCCATGATGAGCTGGGCTCATCTCTCTAATTCATG
TCTTCCTAAT-TTTTTGTTGTTATGCAGATAGGGTTTGGGCGGAGGTTGATTCCCCTCCGACCGAGCGTACCGAGTTGCT
TTGCTGTACAAAGATCCCTTTTTGATGGTGCCATGGTGCTCCTCTCTAGGCAAGCTGCAACCATCCTCCCCCATCATTTC
TTGTATTTTCTTTTTAAAATTTTACACACTGAGCTATAGGTTGATCAGATCTGTTGTATGAGTCAGAACCTGCATAAGAA
CAATTATCAACTTTTTAATGTGCAGGTTTATGACTACATTACAGATCTTGGTGGCTGCCTGTACATGCCATTTCAGTAGT
TGGATTATGCATTACCTGCAATTAGTCAAGTGATTAGTTATTACCAGTAGTATCTGGACCTTATTTGGTTTGGTCAATTT
A---GTCAATGAACATCCA-TTTTTCTAAATTTATTGGTATTTTTAATATGCCATTTGTGTCAGCACACTAATGTCAAAT
CTTGT---------------------------------------------------------------------------
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>SNPs
-SSSSSSSSSS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS---------S--S-S-------S--------------S-----------------------S---------
--S--S-------------SS--------------------------------S-----S-S-----SSSS--SS-----
-----S----------S-------------------------------S----------S--S-----------------
--S-S------S------------------------------------------------------S---------S---
---SS---------------------------------------------------------------------------
----S---------S---------S----------S-S---S----------S----------------------S----
--------------------------SSSS--------S-----------------S---S---S----------S----
---------------------------------------------S--------S-----------------S-------
--------------------------------------------------------S---S---------S---------
---------S----S----SS-----------------------------------------------------------
-------------------------------------------------S----S------------------S------
---------S--------S-----------------------------S----S--------------------------
-SSS---------------------------------------------------S------------------------
--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_559
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-----------------------------------------------------------AGCTGACCGGGAAGATACCT-
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>reverse_1846
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-----GGACAAGTCCCAGTCCATGG-------------------------------------------------------
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