>input_sequence_84992
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-------------ATGGGTAACGCTCTGC--------------TCCCCCTCTTCCCCCCGCTAGATCCCTATCCTACTGT
TGCCGTGGTTCTTCTTGGTGCTGACCCGGCGGTGCCTGCCTGCCTTCAGGTAAGGTGCACGGATCGCTGGCCCGAGCCGG
GAAGGTGCGGGGCCAGACGCCCAAGGTGGCGAAGCAGGACAAGAAGAAGCAGCCGCGCGGCCGCGCCCACAAGCGCATCC
AGTACAACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGCCCCAACTCGTCCGAGAAGTAG------
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>chr6A_1_TraesCS6A01G372200
GGCTAATCCAATGCCGTAGCAGGCATTTTACCTCGCCCATGTCTGCAAGCAGGAGGTCTCCCTCCGTCTCCCGCTCCAAA
GCAACATCTGCAAGG-GGGAAACAAAACTGAAGCTCTCAAACAGAAACCTAAGTGACACACCAACATGTCCATAAGAGCA
ACAAACAAAGGCGAGT--TCCTCACCAAGCATGGACTGTGAGATATCGCAGCCGATCCAGTGGTGCCCGTGCTCCGTCAG
CGTCTCACCGCTAAGCCCGGAGCCGCACCCTGCGATTCACAGCACACAGGACCACGATTGTAAACGCCAGCAATTCACCA
AGACA------CATGGTTTCTCTGTCGAAGCAACGGAGAATCGAGTAGTTCTATGGTACTGTGGGTGAGCGTATAGAGGA
AGCTCACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCCGGGAGCGCCAGCAGCTCCAGCGCCCTCTCGGAGATCCT
CGCCTGCGAAGACG------------AAGAAGAAGGAGATAACCCGGGTCAGCCTCACCAGGAACCACCTGAGCTCCCCA
CACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATGATG---------------------------
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---------------------------------------------------------------------CGGGAGGAGGT
GGTGTACTTGCGCGCCTCCGACTCGTTGTAGAATATCTCCGGCGGGGCCTGCACCTCCGGCCGCGGCATCTCGCCCC---
---CTCTCT----CCTCCGCCGCCGGTGAGCTCGCTCCTGTGCCCGCGCGCCGCCGCCGCCGCTTCTGCGAGGGTTCTGT
TCTCTCGGGGGT----------GGAGGAGGAGGGAGGAGGTCTCCACTCCCCAC--CTCTTTTACGGGCCCCTAACGGGC
CACGGGCTCT----------CGGCCCAGCTCCCACGGGCCCCTCAGCCCACGGCCCGCATAAC----AACGGAGCCCTCC
CCTCTATAAAATCTCCCACCCGTCTAGGGCACACCTCCCA-TCAGCAGAAGCCGCCGCCGCCCGAGCACTCCG-------
------------------------------------------------TCTCCTCGCCGAAGCGC----CGCCGCTCCAC
CGCCGCAGCCGCCATGGGTAACGCTCTGC--------------TCCCCCTCTTCCCCCCGCTAGATCCCTATCCTACTGT
TGCCGTGGTTCTTCTTGGTGCTGACCCGGCGGTGCCTGCCTGCCTTCAGGTAAGGTGCACGGATCGCTGGCCCGAGCCGG
GAAGGTGCGGGGCCAGACGCCCAAGGTGGCGAAGCAGGACAAGAAGAAGCAGCCGCGCGGCCGCGCCCACAAGCGCATCC
AGTACAACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGCCCCAACTCGTCCGAGA---AGTAGATC
TAGGTGGTCTCGCGCCAGCCCTCCTTTTTTTTGTTTCCCGT-CAGTAGCTGTGATCCGTTC---CGGTATGCATGCTAAG
AAGTAAGAAGA---CCTAATCAAGTATCTGTAATTTTCTGTGATGTTGGTAATGGAAATCTCACTGCATTGTCCAGTTAA
TA-TTTGCCATATGCCTA-TTTTATCTCATATTATCCTGCTTGTGGCAACCTGCTTCTGTTATTTTATATGGTCTGTAAG
CTACAATAGCTGTATACCAGAGTACTGATTAGTGGTTGGAACGAATCCTTAGCTGAATGACCCAGCAATAGTGTACCAGC
CAGTTTTTTTGGGTCTTGTTGCTGATGCTTTGTCTGGATTTGAAAACTTCTGTACTTCCTTCTTTTTTAAATTTGGATTT
GCTTCTTTTCCAGTTTGTGCTGATGGCAGTGAGGATATGCAAATATTCAAGCTCAACAGACCAAATCACAGGTCGTCTCT
TTTGAGATTGATTTGTATGCCGATTATCCCACTGAACCGAGCCATCACTTTGAAGTTCCATTTTTTT----CTTTTGAAA
ACGGTTGGTTTTCTTTTGAAAAATGG------TGTATCGTTGTGCGTGTTTTTCCGAGCCTTCTCTGCCGTGTTGTGGTA
ACAGCTCTCTTTTTCGATTGAT-----------TGTTTCCAGTATCAGGTGATGAAACCTTGAAACAATCTTAGGACACC
TTCTGACACAGTGCTGTTTTCCTGTGAATGAGAAGTCATTTATTTTCTGATGATACACAACTGGCTCACGTTGTGCTCAT
TGCATATATTTATCCCTCTTTAATTTTTTAGT-----------------TACAGGTTTTCAATTGAAATTTTATGCAGCT
TTCTGAGCTTTTTGTCAGTTTAAACATTTTTTTCTGTCC------------CATTTGACTTTTGTTGGTCTGTCTTTGTT
GGAAACTCCATTTCATTGTTGTATCTACCGTAATCTAACTTGGGCCCAATGGTCCTTCTCTGGTAGCTCCAGGCATTGAC
CAGGGGATCTATAATT
>chr6B_5
----AATCCAGTGCCGCAGCACGCATCTTACCTCGCCCATGTCTGCGAGCAGGAGGTCACCCTCCGTCTCCCGCTCCAGA
GCAACATCTGCGAGGTGGAAAACAAAACTGAAGCTCTCAAGCAGAAACCTGAGTGACACAGCAACACGCCCATAAGAGCG
AGGAACGAGGTGAATTCCTCCTCACCAAGCATGGACCGCGAGATATCGCAGCCGATCCAGCGGTGCCCGTGCTCCGTCAG
CGTCTCGCCGCTAAGCCCGGAGCCGCACCCTGCCATTCGACACACAGGAC-CCATGATTGTAAACGCCAGCAATTCATCA
AGACGCAGGACCATGGTTTCTCTGTCAAAGCAACAGAGAATCGAGTAATTCTATGGTGCTGTGGGTGAGCGTGGAGAGGA
GGCTGACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGCCAGCAGCTCCAGCGCCCTCTCGGAGATCCT
CGCCTGCGGAGAAGAAGAAGAAGAACAAGAAGAAGGAGATAACCCGGGTCAGCCTCACCGCTTGCCGCCGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGAGGAGGT
GGTGTACTTGCGCGCCTCCGCCTCGTTGTAGAATATCTCCGGCGGCGCCTGCACCTCCGGCCGCGGCATCTCGCCTCCCC
TCTCTCTCTCTCTCCTCCGCCGCCGGTGGGCTCGCCCCTGTGCCCGCGCGCCGCCGCCGCCGCCGC--CGAGGGTTCTGT
TCTCTCGGGGGGTGGGGGAGGAGGAGGAGGAGGGAGGAGGTTTCCACTCCCCCCATCTCTTTTACGGGCCCCTAACAGGC
CACATCCACGGCCCCCCCTCGGCCCAT----------GCCCAACGGCCCACGGCCCACATAAGAACGAACGGAGCCCTCG
CCTCTATAAAATCTCCCACCCGTCTAGGGTTGATTCATCTGTCAGCAGAAGCCGCCG---CCGCCGCCGCCCGAGCGCTC
CCCGTTCTCGTCGCCGAAGCGCTCCCCCGCCGCTCGAGTGCTCCCCGTTCTCGTCGCCGAAGCGCTCCCCGCCGCTCCAC
CGCCGCAGCCGCCATGGGTAACGATCTGCTCCTCCCCCTCTTTCCTCGCTAGATCCCTATCTAC--------CCTAGTGT
TGTCGTGGTTGTC---GGTGCTGACGCGGCGGTGG-TGCCTGCCTTCAGGTAAGGTGCACGGATCGCTGGCGCGGGCCGG
GAAGGTGCGGGGGCAGACGCCCAAGGTGGCGAAGCAGGACAAGAAGAAGCAGCCGCGCGGCCGCGCCCACAAGCGCATCC
AGTACAACAGGCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGCCCCAACTCCTCCGAGAAGTAGTAGATC
TTGGTGGTCTCGCGCCAGCCCTCCTTTTTTTTTTGTTTT-----------------CGTTC---CAGTATGCATGC----
---TAAGAAGA---CCTAATCAAGTATCTGTAATTTACTGTGATGTTGGTAATGGAAATCTCACTGCATTGTCCAGTTAA
TTTTTTGCCATATTCCTGTTTTATCTT-ATATTATCCTGCTTGTGGCAATCTGCTTCTGTTATTTTATC--CTCTGTAAG
CTACAATAGCTGTATAC--------TGATTAGTGGTTAGAACGAATCCTTAGCTGAACGATCCAGCATTAGTGTGCCAGT
CTGTTTTTCTAGGTCTTGTTGCCGATGCTTTGTCTCGATTTGAAAACTTTCCAACTTAA-TCTTTTTTAAATTTGGATTT
GCTTCTTTTCCAGTTTGTGTTGATGGCAGTGACGATTTGCAAATATTCAAGCTCAACAGACCAAATCACAGGTCATCTCT
TTTGAGATTGATTTGTATGCCGATTATCCCGCTGAACC-AGCCATCACTTTGAAGTTCCATATTTTTTTCTCTTTTGAAA
AGGTTTGGTTTTCTTTTGAAAATTGGCAACTATGTATCCTTGTGCATTCTTTTCTGAGCCTTCTCTGCCGTGTTATGTTA
GCATCTCA-GTTTTTTTTTGATGATTTAATTGATTTTTACAGTATCACGTGATGAAACCTTGAAACAATCTTAGGACACC
TTCTGACACAGTGCTGTTTTCCTGTGAATGAGAAGTCATTTATTTTCTGATGATACAAAACTGCCCCACATTGTGCTCAT
TGCATATATTTATCCCTCTTTATTTTCTAGTT------------------------------------------------
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>chr6D_14
-------------CCGCAACAGGCATTTTACCTCGCCCATGTCTGCGAGCAGGAGGTCTCCCTCGGTCTCCCGCTCCAGA
GCAACATCTGCAAGG-GGAAAACAAAACTGAAGCCCTCAAACAGAAACCTAAGTGACACACCAACAAGTCTGTAAGAGCA
ACAAACAAAGGTGAGT--TCCTCACCAAGCATGGACTGTGAGATATCACAGCCGATCCAATGATGCCCGTGCTCCGTCAG
CGTCTCGCCGCTAAGCCCGGAACTGCACCCTGCGAATCACAGCACACAGGACCATGATTGTAGACACCAGCAATTCACCA
AGACG------CATGGTTTCTTTGTCAAAGCAACAGAGAATCGAGTAGTTCTATGGTACTGTGGGTGAGCGTAGAGAGGA
AGCTTACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGCGAGCAGCTCCAGCGCCCTCTCGGAGATCCT
CACCTGCGAAGAA---------------GGAAGAGGAGATAACCTGGGTCAGCCTCACCAGGAACCACCTGAGCTCCCCA
CACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATGATG---------------------------
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---------------------------------------------------------------------CGGGAGGAGGT
GGTGTACTTGCGCGCCTCCGACTCGTTGTAGAAT----------------------------------------------
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>chr1D_14
-------------CCGCAACAGGCATTTTACCTCGCTCATGTCTGCGAGCAGGAGGTCTCCCTCGGTCTCCCGCTCCAGA
GCAACATCTGCAAGG-GGAAAACAAAACTGAAGCCCTCAAACAGAAACCTAAGTGACACACCAACAAGTCTGTAAGAGCA
ACAAACAAAGGTGAGT--TCCTCACCAAGCATGGACTGTGAGATATCACAGCCGATCCAATGATGCCCGTGCTCCGTCAG
CGTCTCGCCGCTAAGCCCGGAACTGCACCCTGCGAATCACAGCACACAGGACCATGATTGTAGACACCAGCAATTCACCA
AGACG------CATGGTTTCTTTGTCAAAGCAACAGAGAATCGAGTAGTTCTATGGTACTGTGGGTGAGCGTAGAGAGGA
AGCTTACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGCGAGCAGCTCCAGCGCCCTCTCGGAGATCCT
CACCTGCGAAGAA---------------GGAAGAGGAGATAACCCGGGTCAGCCTCACCAGGAACCACCTGAGCTCCCCA
CACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATGATG---------------------------
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---------------------------------------------------------------------CGGGAGGAGGT
GGTGTACTTGCGCGCCTCCGACTCGTTGTAGAAT----------------------------------------------
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>chr3D_20
-------------------CAGGCATTTTACCTCGCCCATGTCTGCGAGCAGGAGGTCTCCCTCGGTCTCCCGCTCCAGA
GCAACATCTGCAAGG-GGAAAACAAAACTGAAGCCCTCAAACAGAAACCTAAGTGACACACCAACAAGTCTGTAAGAGCA
ACAAACAAAGGTGAGT--TCCTCACCAAGCATGGACTGTGAGATATCACAGCCGATCCAATGATGCCCGTGCTCCGTCAG
CGTCTCGCCGCTAAGCCCGGAACTGCACCCTGCGAATCACAGCACACAGGACCATGATTGTAGACACCAGCAATTCACCA
AGACG------CATGGTTTCTTTGTCAAAGCAACAGAGAATCGAGTAGTTCTATGGTACTGTGGGTGAGCGTAGAGAGGA
AGCTTACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGCGAGCAGCTCCAGCGCCCTCTCGGAGATCCT
CACCTGCGAAGAA---------------GGAAGAGGAGATAACCCGGGTCAGCCTCACCAGGAACCACCTGAGCTCCCCA
CACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATGATG---------------------------
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---------------------------------------------------------------------CGGGAGGAGGT
GGTGTACTTGCGCGCCTCCGACTCGTTGTAGAAT----------------------------------------------
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>chr3D_20
-------------------CAGGCATTTTACCTCGCCCATGTCTGCGAGCAGGAGGTCTCCCTCGGTCTCCCGCTCCAGA
GCAACATCTGCAAGG-GGAAAACAAAACTGAAGCCCTCAAACAGAAACCTAAGTGACACACCAACAAGTCTGTAAGAGCA
ACAAACAAAGGTGAGT--TCCTCACCAAGCATGGACTGTGAGATATCACAGCCGATCCAATGATGCCCGTGCTCCGTCAG
CGTCTCGCCGCTAAGCCCGGAACTGCACCCTGCGAATCACAGCACACAGGACCATGATTGTAGACACCAGCAATTCACCA
AGACG------CATGGTTTCTTTGTCAAAGCAACAGAGAATCGAGTAGTTCTATGGTACTGTGGGTGAGCGTAGAGAGGA
AGCTTACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGCGAGCAGCTCCAGCGCCCTCTCGGAGATCCT
CACCTGCGAAGAA---------------GGAAGAGGAGATAACCCGGGTCAGCCTCACCAGGAACCACCTGAGCTCCCCA
CACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATGATG---------------------------
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---------------------------------------------------------------------CGGGAGGAGGT
GGTGTACTTGCGCGCCTCCGACTCGTTGTAGAAT----------------------------------------------
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>chr6D_393
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-GCTGACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGCGAGCAGCTCCAGCGCCCTCTCCGAGATCCT
CGCCTGCGAAGAG---------------GAAGAAGAAGATAACCCGGGTCAGCCTCACCACGAACCGCCGGAGCTCCCCA
CACAACACACGACGAGAGGGGGGCTTGGGCTGCTTGCCTGGATTTCGATGATG---------------------------
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---------------------------------------------------------------------CGGGAGGAGGT
GGTGTACTTGCGCGCCTCCGACTCGTTGTAGAATATCTCCGGCGGCGCCTGCACCTCCGGCCGCGGCATCTCGCCCC---
---CTCTCTATCTCCTCCGCCGCCGCTGAGCTCGCTCCCGTGCTCGCCCGCCGCCGCCGCCGCCGC--CGAGGGTTCTGT
TCTCTCGT-------GGGTGGAGGAGGAGGAGGGAGGGGGTTCCCACTCCCCAC--CTCTTTTACGGGCCCCTAACGGGC
CACATCTCCAAGCCCAACACCGGACCATTTCCCACGGGCCTGCCAGCCCACGGCCCGCATAGC----AACGGAGCCCTCG
CCTCTATAAAATCCCCCACCCATCTAGGGCACACCTCCCA-TCAGCAGAAGCCGCCGACGCCGCCGCCGCCCGAGCGCCC
TCCGTTCTCCTCGCCGAAGCG----------------------------------------------CCCGCCGCTCCAC
CGCCGCAGCCGCCATGGGTAACGATCTGC--------------CCCCCCTCGACCCCTATCTGC--------TCTACTGT
TGTCGTGGTTGTC---GGTGCTGACGCGGCGGTGG-TGCCTGCCTTCAGGTAAGGTGCACGGATCGCTGGCTCGCGCCGG
AAAGGTGCGGGGCCAGACGCCCAAGGTGGCGAAGCAGGACAAGAAGAAGCAGCCGCGCGGCCGCGCCCACAAGCGCATCC
AGTACAACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGCCCCAACTCCTCCGAGAAGTAG---ATC
TAGGTCGTCTCGCGCCAGCCCTCCTTTTTTTTTCGTGTTTCCCAGTAGCTGTGATCCGTTTATTCAGTATGCATGC----
---TAAGAAGAAGACCTGATCTAGTATCTGTAATTGACTGTGATGTTGGTAATGGAAATCTCACTGCATTGTCCAGTTAA
TA-TTTGCCATATGCCTA-TTTATCCT-ATATTATCATGCTTGTGGCGGTCTGCTTCTACTATTTCATC--GACTATAAG
TTGCAATACCTATATATGTATACTACAGTGC-TGATTAGAACGAATAGTTAGCTGAACAATGAATCAATGCGTGACTGCC
AGTTGCTTAGC--TCTTTTTGCTGTTGCTTTGTCTCGATTTGAGAACTTTTCAACTTTGTTTCTTC----ATTTGGATTT
GCTTCTTTTCCAATTTGTGCATATGGCAGTGACGATTTGCAAATATTCAAGCTGAACAGACCAAATCACAGGTCGTCTCT
CTTGAGATTGATTTGTATGCCGATTATCCCGCTGAACCGAGCCATCACTTTGTAGTTCTCTTTTTTCTTTTCTTTTCAAA
ACGGTTGGTTTTCTTTTGAATAAACG------TTTATCCTTGTGCGTGTTTTTCTGAGCCTTCTCTGCCGTGTTGTGGTA
ACATCTCT-TTTTTTGATTGAT-----------TTTTTCCAGTATCAGGTGATGAAACCTTGAAACAATCTTAGGACACC
TTCTGACACAGTGCTGTTATCCTGTGAATGAGAAGTCATTTATTTTCTGATGATACAAAACTGCCCCACATTATGCTCAT
TGCATATATTTACCCCTCTTTATTTTCTAGTTTTGTGCTATCTCTGGACTACAGATTTTTAGTTGGCATTTTATGTCGCT
TTCAGAGGTTTTTGTCAGTTTAAAACATTTTTTCCGTTGGCTGCAACTAAACATTTGACTTTTGTGGGTCTGTCTTCGTT
GGAGACCCCATTTCATTGCTTTAT--------------------------------------------------------
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>SNPs
SSSS------S-----S-----------------------------S-------------------------------S-
------------------S-----------------------------------------------S-------------
-----------S--------------------------------------------------------------------
------S-----------------------------------------------S-------------------------
----S---------------------S-------S--------------------------------------S------
----S------------------------------------S--------------------------------------
------------S-------------------------------------------------------------------
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---------------------------------------------S----------------------------------
---------------------------------------------------------------SS-SS------------
-----------S-----------------------------S--------------------------------------
---SSS-S-S-----------------SS------------SS------------------------------------S
---------------------------------------------------------S----SSS--SSS----------
----------------------------------------------------S---------------------------
-----------------------S-------------------S-------SS----SSS---SSSSSSSSS--------
--S-------S-SSSS---------S--------SS-----------------------------------S--S-----
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-------------------------------------------------------------S------------------
--------------------------------S-S-SSSSS------------------------S----------SSSS
SSS---------------------------------S-------------------------------------------
----------------------SSS--S---------------------S------------------SSS---------
-----------------SSSSSSSS------------S-------------------S--S-------------------
-S------S-S------------------------S-------------S-SS----SS---------------------
--------------------------------S---S-------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------S---------------S-------------------------
---S----S-----S-------------------S---------------------------------------------
---------------------------------------------------------S-----S-S---S----------
----------------------S---S-SSS-----------------------S----S-S---SS--------SS---
---S---S----------------SSS-------S--SS--------------------------S----------S---
---S--S-----------S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_295
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-----------------------------------TTCACAGCACACAGGACCAC-------------------------
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>reverse_1717
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------------------------------------CCCGTCAGTAGCTGTGATCC------------------------
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