>input_sequence_84984
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----ATGGACGCCGGGCAATTCGTCATCCCGATCCTCGGCATCGTCGGCGCCGCGGCAGCGACCTTCTACGCCGTCAGCT
TCATGGAGATCCGGGAGGTTTGCCTTGTCCCCCTTATTCCTCCGTGCATTCGTACGCACAACTTCTCTCCGTTAATTGTG
AATTCGCGTCGATGGTGCAGAAATCACTGGAGGACCTGGACGACAAGTACTCGGAGTACGAGGAGGGCGGCGGGCGGCAG
CGCCGGGCGCGGCGGAGGTCCGGCCGCCAAGCCAAGAAGCGAAATGATTGA-----------------------------
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>chr2D_1_TraesCS2D01G502200
GACGAGTGACGGATGCGCGTGCCATGGCCTTGACTACTATGATGATGGATGATGCACCCGTATGTGTCCATGCCCGTAGC
GTGCAGAGATGTTCAGTTCTGTATCCTCCAGCAGTGGCATCAACTGCACCTTACGTACTACTACTAGTTCTGTGATCTTG
CTAATGTGCGTGTGAGTACCAGTGCGTGTGTTGAGCTGTATGAACACTTGTTATGC--------CTGTGAAGTGAATAAG
AAGTTCAATGAAGTATGTGCAGATTATTTGGCATCTTCTTGTGTGCCGTACCATAGACATTGTTTGTTCTAGAAAGCAAC
TTCGCAGC------------------------------------------------------------------------
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-------------------------------------------TGGAAGCTCGAAGATGTGTGCAGCGGTTCTGAATAAT
TTGTGTGAGCGTTACAGAAACTGATGCACAAACTTACCCGCAAAAGCAAAAAAAAGAAACTGATGCACAAATAATAGTAC
TCACTCCGATCTATACATGGCCATGGGAAACCCGGCCCGGCCGGCCTGACCCGGCCTGGCCCGGTCTTGCCCGCGGGCCA
GGCCTGGGACTAAGTTTTGAGCCTAAAGGCCGGGCCGGGCTTGGCATATTTGCGTTTTAAGGAAGAGGCCTGGCCCGAGG
CCCAACATGCTTTTTCTCTGATGGGCTGGGCCTGGGTCTGAACTCTAGGTCCGATGACCGAGCCAGGCCTAGGTTTTTTG
CTACGGGCTTTATTAGGCTCGGACCGGCCCGACTATGGCAGGTATATCCTATCCAAATGTATCAAAAAAAAAGGTATATC
CTATCCATAGTAATCGACTCACATTTAATAGAACTTTGGAGATTCTAAAAAAAAAACTTAATAGAGCTTTGGTGAATATC
TCCTTTTAACAGGGGTGTGACTGTAAGAATGAACAAAAGCTGTCTTCGGTGTTCTGTATTTGGATAGATAGAGGCTGGTG
CGATGGTTGGCT-TGAGGAGAACAGAAACCAGCAAAGCCCTTCACTTCAGTTCAGCCTCTCGGTGTCGTAGGTCGGAACC
GAACATGGACGCCGGGCAATTCGTCATCCCGATCCTCGGCATCGTCGGCGCCGCGGCAGCGACCTTCTACGCCGTCAGCT
TCATGGAGATCCGGGAGGTTTGCCTTGTCCCCCTTATTCCTCCGTGCATTCGTACGCACAACTTCTCTCCGTTAATTGTG
AATTCGCGTCGATGGTGCAGAAATCACTGGAGGACCTGGACGACAAGTACTCGGAGTACGAGGAGGGCGGCGGGCGGCAG
CGCCGGGCGCGGCGGAGGTCCGGCCGCCAAGCCAAGAAGCGAAATGATTGACGGATACACCATCAGCCTGAGAAGTAAAG
AGGATATGCGTGGCCTCTGTGTCGATGTTCTTCACTTCCCCTCGTTTTGTGAGCGGCTTGATGCTTAGCAGCTAATCCAG
TCTATGTTCGACCCGTGGCCAGAGGAAATGGGCATTGTTCACTGCTGC--------------------------------
---------------------------------------------------------------------------TAGCT
CTTTTGGCCCTGCACTTGCATTCAGTGCTTATGCATTTGATTATACTCCTAGTACTTCTCTGCGCTGCGCATGCTGATTC
TGAACGTGTATGATGCATTGTCGAGCATGA--GTTCATGCGGTCAGAGATTGCCAGTTTTCTGTAA----AACGAATTGG
GTAATTGATTGAGAAGAATGGATGAGAGCATGGTTAATAGTATAGCCAACAATCGGCTATATGAAGTGGTCATGTCATTT
ATAGCCAATTTAATAGCCCACTCATACAATAGTTACACATATTAGAATACTGTACAATTAATACATGACCCACTCTTTCC
TCTCACAAAGGGTGTTGTAGCTCGTGCTAAAGCCGGCCGTAAGCTTGTAGCCCGCTTCTTTTCTCTCTCATCTCCTTTCT
TCTCCACCTAGACATAAATCTGACATGGCATCTCTTATAGCCCGCCCATGTCACCCTATTGTACTTGCTCTGATGCGTTC
GGCCGCCAACGCATGCATCGGGAAGCCCTCGTCGGCCTCTCCTCTCCAT--------CGCTGCCCTGGTCCTCCAACTCC
CTCCTCCTCGGTCTATGAGCCCTATGGGCGCTGAGCGGAGCCAACACCTACACCGATGTTCTCCGGTAGGAGTTGTGCTT
TGCCACCGAACTCCCGTTGTCACGCAAGGGATGGGCCGTTGTGCCTCTTGGCCGCAGCT-AAGGCAGAAGCCGTACCTGG
TCGGATCCTCTTGCTCTCCGCCAACATGCCCACGGCC----TTGGAGGGTGGAGATGCATGTTAACACGTTGTATACCTG
TGTATGTACATGTACTTGTATTCCTAGAGAATAGGATCATGGATCACGCCCGGGCCT
>chr2B_163
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--AATGTGCGTATGAGTACCCGTGCGTGCACTGAGCTGTGTGAAAACTTTGTCGTGCTTGTGATCTGTGAAGTAAATAAG
ATGTTGAATGAAGTATGTGCAGGTTATTTGGCACATCTTGTGC-GCCGTACCATGGACATTGTTTGTTCTAGAAAGCAAC
TTCGTGTAGCGTTCCATACACCAGCAAGTTCACCCGCTTGTATCCTTGGAGGTTTGGAAAGAGAGAAATGCGAGGGTGTT
CCAAAAGAAATCGTCTAGGCCAACAACTGTGTTCGCAGGCATCAAAATAGAGGCCAAAAATTGGGTCTTGACCGGGGCTA
AACACATGGGATCATTGATGCCGCAAGAGTAGCTCTGTTTTCTTTCATTTGTGGAGGAGTAATGACCCTCTTGAGACCTG
TTACTCTCTTTTTCTTTATTAATGAGATGAGGCAAAACTTTTGCCTCCATTTTGAAAAAAAACTCTAGTTGATTGGCAAA
TGTGGGCTATGCATGGTGAGCAATGCATTTGTACTTCAACACTTGGCAGCTCGAAGATGTGTGCGTTGGTTCTGAATAAT
T-GTGTGAGCGACAGAGGAACTGATGCACAAAT-----------------------------------------------
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--------------------------------------------------------------------------AATATC
TCCTTTAAGTGGGGGTGTAACTGTAAGAATGAACGAAAGCTGGCCTTGGTGC--------TGGATAGATAGAGGCTGGTG
CGATGGTTGGCTGT---GAGAAAAGAAACCAGCAAAGCCCTTCAGTTCAG-----CCTCTCGGTGTCGGAGGTCGGAACC
AAACATGGACGCCGGGCAATTCGTCATCCCGATCCTCGGCATCATCGGCGCCGCGGCCGCAACCTTCTACGCCGTCAGCT
TCATGGAGATCCGGGAGGTTTGCCCGATATCCCATATTCCTCCGTGCATATGTACGCACAACTTCTCTCCGTTGATTGTG
AATTCGCGTCGATGGTGCAGAAATCACTGGAGGATCTGGATGACAAGTACTCCGAGTACGAGGAGGGCGGCGGGCGGCAG
CGCCGGGCGCGGCGGAGGTCCGGCCGCCAGGCGAAGAAGCGGAATGATTGACAGCTACACCATCATTCTGGGAACTGAAG
AGGC--TGCGTGGTCTCTGTATTGATGTTATTCACTTCCCCTCTTTTTGTGAGCGGCTTGATGCTTAGCAGCTAATCCAA
TCTACGTTCGACCCGTAGCCAGAGGAAATGGGCATTGGTCACTACTGC--------------------------------
---------------------------------------------------------------------------TAGTT
CTTTTGCCCCTGCACTTGCATTCAGTGCTTATGCTTTTGATTACTACCA---TACTTCTCTGCGCTGCGCATGCTGATTC
TGAAGGTGCGTGATGCAATGCCGGGCATGCGTGTTCATGTGGTCAGAGATTGCCAGTTTTCTGTAA----AACGAATTGG
GTAATTGATTGAGAAGAATGGATGA-------------------------------------------------------
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-------------------------------------------------------------------------TGCGTTC
GGCCACCAACGCATGCATCAGGAAGCCCTCGTCGGCCTCTCCTCTCCATGACTCCATCGCTGCCCTGGTCCTCCAACTCC
CTCCTCCTCGGTCTATGA---------GCGCTGAGCGGAGCCAACACCTACACCGCTGTTCTCCGGTAGGAGTTGTGCTT
TGCCACCGAACTCCCGTTGTCACGCAAGGGATGGGGCGTTGTGCCTCTTCGCCGCAGCT-AAGGCAGAAGCCGTACCTGG
TCGGATAATCTTGCTCTCCGCCAACATGCCCACGGCCGGCATTGGAGGGTGGAGATGCA---------------------
---------------------------------------------------------
>chr2A_832
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--------------------------------------------------------------------------AATAGC
TCCTTTAAGTGGGGGTGTAACTGTAAGAATGAACGAAAGCTGGCCTCGGTGA--------TGGATAGATAGAGGCTACTG
CGATGGTTGGCTGTGAGGAGAACAGAAACCAGCAAAGCCCTTCACTTCAG-----CCTCTCGGAGTCGGCGGTGGGAACC
GGACATGGACGCCGGGCAATTCGTCATTCCGATCCTCGGCATCGTCGGCGCCGCGGCCGCAACCTTCTACGCCGTCAGCT
TCATGGAGATCCGGGAGGTTTGCCCGATATCCCTTATTCCACCGTGCATATGAACGCACAACTTCTCTCCGTTGATTGTG
AATTCGCGTCGATGGTGCAGAAATCACTGGAGGACCTGGACGACAAGTACTCGGAGTACGAGGAGGGCGGCGGGCGGCAG
CGCCGGGCGCGGCGGAGGTCCGGCCGCCAAGCCAAGAAGCGAAATGACTGACTGATACACCACCAGCCTGAGAAGTAAAG
AGGATATGCGTGGCCTCTGTGTCGATGTTCTTCACTTCCCCTCGTTTTGTGAGCGGCTTGATGCTGT-----TAATCCAG
TCTACGTTCAATCCGTAGCCAGAGGAAATGGGCATTGTTCACTATACTGCTACTCCCTCTGTTCGGAATTACTTGTCGCA
AAAATGGATGTATCTAGACGTAATTTAGTTCTAGATACATCCATTTTCGAGACAAGTAATTCCAAACGGAGGGAGTAGTT
CTTTTGGCCCTGCACTTGCATTCAGTGCTTATGCATTTGATTATACTCCTAGTACTTCTCTGCGCTGCGCATGCTGATTC
TGAACGTGTATGATGCAATGCCGAGCATGA--GTTCATGCGGTCAGAGAATGCCAGTTTTCTGTAATTAAAACGAATTGG
GTAATTGATTGAGAAGAATGGATGA-------------------------------------------------------
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-------------------------------------------------------------------------TGCGTTC
GGCCCCCAACGCATGCATCGGGAAGCCCTCGTCGGCCTCTCCTCT--------CCATCGCTACCCTGGTCCTCCAACTCC
CTCCTCCTCGGTCTATG----CTATGAGCGCTGACCA--------------------------------GAGTTGTGATT
TGCCACCGAACTCCCGTTGTCACGCAAGGGATGGGGCGTTGTGCCTCTTCGCCGCAGCTTAAGGCAGAAACCGTACCTGG
CCGGATCCTCTTGCTCTACGCCAACATGCCCACGGCC----TTGGAGGGTGGAGATGCA---------------------
---------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS---------S--------S-------SSS--------S----S----SS-SSSS-----------------S------
-S---S----------------S----------SS-SS-SSSSS----------S-------------------------
----SSSS------------------------------------------------------------------------
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----------------------------------------------S-----------------SSS-------------
-S---------SS-S--S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
------S-SSS-------S---------------S-------S-S------SSSSSSSSS--------------------
--------------------------------------------------SSSSS-------------S-----------
---------------------------------------------------------S--S-------------------
------------------------SSS-SS-------------------SS----------------------S------
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----------------------------------------------------S---------------------------
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----S-----------S--------------------------S------------------------------------
------------------------------------------------------------------------------S-
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-----------------S--S-----------------------------------------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
----S---------------------------------------------------------------------------
------------------SSS-----S----------------------------S------------------------
-----------------------------------S-------------S------------------------------
-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_38
------------------GTGCCATGGCCTTGACTACT------------------------------------------
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>reverse_2282
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-----------------------------------------AGCTTGTAGCCCGCTTCTTT-------------------
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