>input_sequence_84983
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-------------------ATGGACGCCGGGCAATTCGTCATCCCGATCCTCGGCATCATCGGCGCCGCGGCCGCAACCT
TCTACGCCGTCAGCTTCATGGAGATCCGGGAGGTTTGCCCGATATCCCATATTCCTCCGTGCATATGTACGCACAACTTC
TCTCCGTTGATTGTGAATTCGCGTCGATGGTGCAGAAATCACTGGAGGATCTGGATGACAAGTACTCCGAGTACGAGGAG
GGCGGCGGGCGGCAGCGCCGGGCGCGGCGGAGGTCCGGCCGCCAGGCGAAGAAGCGGAATGATTGA--------------
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>chr2B_1_TraesCS2B01G529900
ACCATGTGAAACGATATTATGGAAGCGTTAAACCTTTTGCTCGGGACGCACTTGTATATATATAGAGGCAATGCCGTGGC
TTACAAGACGAAATCGAGAGAGAACGATCGTTACAGGAAACGATCGGTACAGGAGGATTACGAGGGAGAGATAACAGAAG
AAGAGATAGAGAAGGGTACAAGGTTTGAAAGATATCTATCCCTATACAGATATCTATCCCTATACAACTCTATCTCTAAC
TAACCAACTATTTCAACAATGTGCGTATGAGTACCCGTGCGTGCACTGAGCTGTGTGAAAACTTTGTCGTGCTTGTGATC
TGTGAAGTAAATAAGATGTTGAATGAAGTATGTGCAGGTTATTTGGCACA-TCTTGTGCGCCGTACCATGGACATTGTTT
GTTCTAGAAAGCAACTTCGTGTAGCGTTCCATACACCAGCAAGTTCACCCGCTTGTATCCTTGGAGGTTTGGAAAGAGAG
AAATGCGAGGGTGTTCCAAAAGAAATCGTCTAGGCCAACAACTGTGTTCGCAGGCATCAAAATAGAGGCCAAAAATTGGG
TCTTGACCGGGGCTAAACACATGGGATCATTGATGCCGCAAGAGTAGCTCTGTTTTCTTTCATTTGTGGAGGAGTAATGA
CCCTCTTGAGACCTGTTACTCTCTTTTTCTTTATTAATGAGATGAGGCAAAACTTTTGCCTCCATTTTGAAAAAAAACTC
TAGTTGATTGGCAAATGTGGGCTATGCATGGTGAGCAATGCATTTGTACTTCAACACTTGGCAGCTCGAAGATGTGTGCG
TTGGTTCTGAATAATT-GTGTGAGCGACAGAGG---------------------------------------AACTGATG
CACAAATAATATCTCCTTTAAGTG--------------------------------------------------------
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--------------------------GGGGTGTAACTGTAAGAATGAACGAAAGCTGGCCTTGGTGC--------TGGAT
AGATAGAGGCTGGTGCGATGGTTGGCTGT---GAGAAAAGAAACCAGCAAAGCCCTTCAGTTCAG-----CCTCTCGGTG
TCGGAGGTCGGAACCAAACATGGACGCCGGGCAATTCGTCATCCCGATCCTCGGCATCATCGGCGCCGCGGCCGCAACCT
TCTACGCCGTCAGCTTCATGGAGATCCGGGAGGTTTGCCCGATATCCCATATTCCTCCGTGCATATGTACGCACAACTTC
TCTCCGTTGATTGTGAATTCGCGTCGATGGTGCAGAAATCACTGGAGGATCTGGATGACAAGTACTCCGAGTACGAGGAG
GGCGGCGGGCGGCAGCGCCGGGCGCGGCGGAGGTCCGGCCGCCAGGCGAAGAAGCGGAATGATTGACAGCTACACCATCA
TTCTGGGAACTGAAGAGGC--TGCGTGGTCTCTGTATTGATGTTATTCACTTCCCCTCTTTTTGTGAGCGGCTTGATGCT
TAGCAGCTAATCCAATCTACGTTCGACCCGTAGCCAGAGGAAATGGGCATTGGTCACTACTGC-----------------
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----------TAGTTCTTTTGCCCCTGCACTTGCATTCAGTGCTTATGCTTTTGATTACTACCA---TACTTCTCTGCGC
TGCGCATGCTGATTCTGAAGGTGCGTGATGCAATGCCGGGCATGCGTGTTCATGTGGTCAGAGATTGCCAGTTTTCTG--
--TAAAACGAATTGGGTAATTGATTGAGAAGAATGGATGA----------------------------------------
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--------TGCGTTCGGCCACCAACGCATGCATCAGGAAGCCCTCGTCGGCCTCTCCTCTCCATGACTCCATCGCTGCCC
TGGTCCTCCAACTCCCTCCTCCTCGGTCTATGA---------GCGCTGAGCGGAGCCAACACCTACACCGCTGTTCTCCG
GTAGGAGTTGTGCTTTGCCACCGAACTCCCGTTGTCACGCAAGGGATGGGGCGTTGTGCCTCTTCGCCGCAGC-TAAGGC
AGAAGCCGTACCTGGTCGGATAATCTTGCTCTCCGCCAACATGCCCACGGCCGGCATTGGAGGGTGGAGATGCAAACGAG
CGCGGGGATGGAGCCGAAGTGAGATCCATAGCAACGGTGGTGGGCTGGCCGGTGAGCAGAAGGTGCTACTGTCGCCAAGG
GGTGCGGGGAAGATGGCAAGAGCGAGTGGGAACAGAGAAAGACGCCAGGTGGATAAACCACTCTGCAAAACCACCTTCTA
GTCTTCTATACGGTGATTTATCTGGTTTCCTAAAAGGACGTGCTAGATCATAGTCGACTGAAACTTAACGAAGTCTTAGT
CAAGTGATATATATATTATATAAAAAAAACCAAAACAAAATGTGTGAATCTCGATGAAAGGAATATAATATCGAATGAGA
CATAACGACGTCTCGATCGACTGAGACTTGACAAAACTGT
>chr2D_258
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-----------------AATGTGCGTGTGAGTACCAGTGCGTGTGTTGAGCTGTATGAACACTTGTTATGC--------C
TGTGAAGTGAATAAGAAGTTCAATGAAGTATGTGCAGATTATTTGGCATCTTCTTGTGTGCCGTACCATAGACATTGTTT
GTTCTAGAAAGCAACTTCGCAGC---------------------------------------------------------
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----------------------------------------------------------TGGAAGCTCGAAGATGTGTGCA
GCGGTTCTGAATAATTTGTGTGAGCGTTACAGAAACTGATGCACAAACTTACCCGCAAAAGCAAAAAAAAGAAACTGATG
CACAAATAATAGTACTCACTCCGATCTATACATGGCCATGGGAAACCCGGCCCGGCCGGCCTGACCCGGCCTGGCCCGGT
CTTGCCCGCGGGCCAGGCCTGGGACTAAGTTTTGAGCCTAAAGGCCGGGCCGGGCTTGGCATATTTGCGTTTTAAGGAAG
AGGCCTGGCCCGAGGCCCAACATGCTTTTTCTCTGATGGGCTGGGCCTGGGTCTGAACTCTAGGTCCGATGACCGAGCCA
GGCCTAGGTTTTTTGCTACGGGCTTTATTAGGCTCGGACCGGCCCGACTATGGCAGGTATATCCTATCCAAATGTATCAA
AAAAAAAGGTATATCCTATCCATAGTAATCGACTCACATTTAATAGAACTTTGGAGATTCTAAAAAAAAAACTTAATAGA
GCTTTGGTGAATATCTCCTTTTAACAGGGGTGTGACTGTAAGAATGAACAAAAGCTGTCTTCGGTGTTCTGTATTTGGAT
AGATAGAGGCTGGTGCGATGGTTGGCT-TGAGGAGAACAGAAACCAGCAAAGCCCTTCACTTCAGTTCAGCCTCTCGGTG
TCGTAGGTCGGAACCGAACATGGACGCCGGGCAATTCGTCATCCCGATCCTCGGCATCGTCGGCGCCGCGGCAGCGACCT
TCTACGCCGTCAGCTTCATGGAGATCCGGGAGGTTTGCCTTGTCCCCCTTATTCCTCCGTGCATTCGTACGCACAACTTC
TCTCCGTTAATTGTGAATTCGCGTCGATGGTGCAGAAATCACTGGAGGACCTGGACGACAAGTACTCGGAGTACGAGGAG
GGCGGCGGGCGGCAGCGCCGGGCGCGGCGGAGGTCCGGCCGCCAAGCCAAGAAGCGAAATGATTGACGGATACACCATCA
GCCTGAGAAGTAAAGAGGATATGCGTGGCCTCTGTGTCGATGTTCTTCACTTCCCCTCGTTTTGTGAGCGGCTTGATGCT
TAGCAGCTAATCCAGTCTATGTTCGACCCGTGGCCAGAGGAAATGGGCATTGTTCACTGCTGC-----------------
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----------TAGCTCTTTTGGCCCTGCACTTGCATTCAGTGCTTATGCATTTGATTATACTCCTAGTACTTCTCTGCGC
TGCGCATGCTGATTCTGAACGTGTATGATGCATTGTCGAGCATGA--GTTCATGCGGTCAGAGATTGCCAGTTTTCTG--
--TAAAACGAATTGGGTAATTGATTGAGAAGAATGGATGAGAGCATGGTTAATAGTATAGCCAACAATCGGCTATATGAA
GTGGTCATGTCATTTATAGCCAATTTAATAGCCCACTCATACAATAGTTACACATATTAGAATACTGTACAATTAATACA
TGACCCACTCTTTCCTCTCACAAAGGGTGTTGTAGCTCGTGCTAAAGCCGGCCGTAAGCTTGTAGCCCGCTTCTTTTCTC
TCTCATCTCCTTTCTTCTCCACCTAGACATAAATCTGACATGGCATCTCTTATAGCCCGCCCATGTCACCCTATTGTACT
TGCTCTGATGCGTTCGGCCGCCAACGCATGCATCGGGAAGCCCTCGTCGGCCTCTCCTCTCCAT--------CGCTGCCC
TGGTCCTCCAACTCCCTCCTCCTCGGTCTATGAGCCCTATGGGCGCTGAGCGGAGCCAACACCTACACCGATGTTCTCCG
GTAGGAGTTGTGCTTTGCCACCGAACTCCCGTTGTCACGCAAGGGATGGGCCGTTGTGCCTCTTGGCCGCAGC-TAAGGC
AGAAGCCGTACCTGGTCGGATCCTCTTGCTCTCCGCCAACATGCCCACGGCC----TTGGAGGGTGGAGATGCA------
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>chr2A_259
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------------------ATGTGCGTGTGAGTACCAGTGCGTGCGCTGAGCTGTGTGAACAAC-TGTTGTGCTTGTGATT
TGTGAAATAAATAAGAAGTTCAATGAAGTATGCGCAGATTATTTGGCAACTTCTTGTGTGCCGTACGATGGGCATTGTTT
GTTCTAGAAAGCAACTTCGTGTAGCGTTGCATACACCAGCCAGTTCACCT------------------------------
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-----------------------------------------------------------------------AAAAAACAC
AAGTTGATTTGCAAA--------------GGTGAGCTATGCATTTGTGCTTCAACACTTCGCAGCTCGAAGATGTGTGCA
TTGGTTCTGAATAATT-GTGTGAGCGACCGAGG---------------------------------------AACTGATG
CACAAATAATAGCTCCTTTAAGTG--------------------------------------------------------
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--------------------------GGGGTGTAACTGTAAGAATGAACGAAAGCTGGCCTCGGTGA--------TGGAT
AGATAGAGGCTACTGCGATGGTTGGCTGTGAGGAGAACAGAAACCAGCAAAGCCCTTCACTTCAG-----CCTCTCGGAG
TCGGCGGTGGGAACCGGACATGGACGCCGGGCAATTCGTCATTCCGATCCTCGGCATCGTCGGCGCCGCGGCCGCAACCT
TCTACGCCGTCAGCTTCATGGAGATCCGGGAGGTTTGCCCGATATCCCTTATTCCACCGTGCATATGAACGCACAACTTC
TCTCCGTTGATTGTGAATTCGCGTCGATGGTGCAGAAATCACTGGAGGACCTGGACGACAAGTACTCGGAGTACGAGGAG
GGCGGCGGGCGGCAGCGCCGGGCGCGGCGGAGGTCCGGCCGCCAAGCCAAGAAGCGAAATGACTGACTGATACACCACCA
GCCTGAGAAGTAAAGAGGATATGCGTGGCCTCTGTGTCGATGTTCTTCACTTCCCCTCGTTTTGTGAGCGGCTTGATGCT
GT-----TAATCCAGTCTACGTTCAATCCGTAGCCAGAGGAAATGGGCATTGTTCACTATACTGCTACTCCCTCTGTTCG
GAATTACTTGTCGCAAAAATGGATGTATCTAGACGTAATTTAGTTCTAGATACATCCATTTTCGAGACAAGTAATTCCAA
ACGGAGGGAGTAGTTCTTTTGGCCCTGCACTTGCATTCAGTGCTTATGCATTTGATTATACTCCTAGTACTTCTCTGCGC
TGCGCATGCTGATTCTGAACGTGTATGATGCAATGCCGAGCATGA--GTTCATGCGGTCAGAGAATGCCAGTTTTCTGTA
ATTAAAACGAATTGGGTAATTGATTGAGAAGAATGGATGA----------------------------------------
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--------TGCGTTCGGCCCCCAACGCATGCATCGGGAAGCCCTCGTCGGCCTCTCCTCTCCAT--------CGCTACCC
TGGTCCTCCAACTCCCTCCTCCTCGGTCTATG----CTATGAGCGCTGACCA----------------------------
----GAGTTGTGATTTGCCACCGAACTCCCGTTGTCACGCAAGGGATGGGGCGTTGTGCCTCTTCGCCGCAGCTTAAGGC
AGAAACCGTACCTGGCCGGATCCTCTTGCTCTACGCCAACATGCCCACGGCC----TTGGAGGGTGGAGATGCAAACGAG
CGCGATGATGGAGCCGAAGTGAGATCCAGAGCAACGGTGGTGGGCTGGCCGGTGAGCAGAAAGTGCTACTGCCGTCGAGG
GGGGC---------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------S--------S--------S--------------S-------S------------
----------------S---S----------------S----------SS--------S---------------------
----------------------------S-----------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-
S--------S-----SSSSSSSSSSSSSS-------S----------S-------------------------------S
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-----------S--------------------------------------------------------------------
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-------------------------------------------------------------S----S-------------
-------------------------------------S---------------------S--------------------
---------------S------------------------------------------S---------------------
------------------------------------------------S-------------------------------
-------------------------------------------------S-----S-----------S------------
--------------------------------------------S--S--------S----------S-S----------
SS---S---S-S------S---------S------S-S------S-------------S---------------------
--------------S-------------------------------------S---------------------------
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---------------------S---------------------------S--------SSSS-S----------------
-------------------S---SS-------------S-----SSS-------S-------------------------
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-------------------S--------------S-----------------------------SSSSSSSS--------
----------------------------------------------------------------------S---------
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---------------------SS-----------------------------SSSS------------------------
----SS----------------------S--------------------------------S---------S--S-S---
--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_534
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----------------------------------CCAACAACTGTGTTCGCAGG--------------------------
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>reverse_2912
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-------------------------------ACAGAGAAAGACGCCAGGTG-----------------------------
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----------------------------------------
