>input_sequence_84944
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----------------------------------------ATGACTAATGTTGAGGTGGAGCTTGACTGTCAAGTGCTCA
TCAATGCACTGCGAAGCAATATTGCTGATCTAGCTCCGGAGGGAATCTTGTTTCAGGAAATACGTACATTTGCCTGGCTG
AATTTCAATAGTGTTTCTTTCTCTTTTGCCCCGAGGGCATGTAATAATCTTGCGCATGCTTTAGCTGTGTTTGGTGCTAG
TCGCCAAGTAGTTCAGGAGCTTTGGTCTGAGGACCTTCCAAATGATGTAAACGTCCAGTTGGCCAGCATTTTAGCTGGAC
CAGTGTGA------------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G196900
CTGGACGGATCCATGGTTAAACAGGGATGGAGTGAGGACCCCAATAACCCCGAGAGGTAGATGTTTACTTAATAGAGTGT
GTGAATTGGTGAATCCGGACACTCAGTCTTGGGATGAAGCCTTGGTGAATGACATTTTCAGCCAGGAGGAAGCTAAAATT
ATCCTAGCTACGCCGGTCAGAGATGAGTATGAGGATTTCTATGCATGGTACCATGACAGTAAGGGGGTTTTCTCTGTAAA
ATCTGCATACAAGATCTACATAAGGGGAAGGGATGCAGCGATGCCAGGGGCCTCAACTATCTCTCCACCACGCTGGGAGT
GGTCTGATATCTGGAAGCTGCCATGCCAACCAAAAACCCAGCAGTTCTTATGGCGTTTTGCGCATAATAGCCTACCATTG
AAACTGAACATGAAGCGTCGGGGCATTGACTGTGATACGGTGTGTGTCTGCTGCAAGCGTTTTGACGAGGATGGTGCCCA
CCTTTTTCTGAAATGTAAACAAGTGAAACGAGTGTGGCGGATGATGCAGTTAGAGTACCTACGTGAGCAAATGTGTGCCT
GTATTGACGTCCATGCATTGATGCATGTTTTGCTTCAGCTGCCTAAAGACAAACAGATTCTTGTTGTCTGTCTGCTGTGG
AGATGGTGGACACGAAGGAACAAAATAAATGCAGGTGAAAAGGTCGGTCCTGTGGAAAGCATAACTGCAGAGATTAATCA
TTAGGCCATGGACTTCCTTGCTCTTTGTCGACATCCACGTACTGCATCTACTCAGTGCCAAGCCCAGGTGTGGAGAAGGC
CCGAGGGCGACCACCTGAAGATTAACTGTGAACGTGCTTTTTCAGTAACACAGGGTACTGGCGGCTGGGGTTTTGTTATC
ATGGACCACGATGGCGACATCCGAGGATCCGGAGCTGGCTATCTGCGTCATGTGGCCTCCCCGGTGCGAACAGAAGCGGA
AGCATGTGCTATGGCACTTGAAGCAGCGTCGAACTGGGGCATGACTAATGTTGAGGTGGAGCTTGACTGTCAAGTGCTCA
TCAATGCACTGCGAAGCAATATTGCTGATCTAGCTCCGGAGGGAATCTTGTTTCAGGAAATACGTACATTTGCCTGGCTG
AATTTCAATAGTGTTTCTTTCTCTTTTGCCCCGAGGGCATGTAATAATCTTGCGCATGCTTTAGCTGTGTTTGGTGCTAG
TCGCCAAGTAGTTCAGGAGCTTTGGTCTGAGGACCTTCCAAATGATGTAAACGTCCAGTTGGCCAGCATTTTAGCTGGAC
CAGTGTGATCTATGGAATCCTAGTGTTATATTTCAAAAAAAATAAGTATTGGCAAGCAACGAACACGGCAGCCGTCGCCG
TTTTTTCTCGGCAGCAATGGTTTTGCAAAAAGGAATTTTTTTTTTATAAACAGATCTAACTCAAAAAATATCACCTGCTT
ATCCCATCGATCC------ATGACCCAACAGGCTCTCAATGAAAGCACCAATGTCGGTT-TATATCCGACATATCTCGTA
GTAGGGGTCCTAAGCTAGGCGTCTTGGAGTGATGGTAACACGGACACGGGATTTTACCCAGGTTCGGGCTCTCTCGAAGA
GATAATACCTTAGGTCCTGCTTTTGATTGTATTCATATGT-GGGATTATACATAGTACATGTATCTATCATGAGATTGTT
CTAGTGAATAGTTGATCATCTATCAACTAGCCTGGCCTCGGTTTATATAACACATCGGAGGCCTAGGGTTTTAGGATAGT
CCTTGGCTTGTGCGCC------TGTGGAAACCTCCTTGTATACCTCAT-GGGCTGCTTGAAGTGGCCCATGAGTGAACCG
TCATGGGG-TCGTCGGCCCGATCAAGCTGGTCGGGAGACGACGTGGTGAGTAACCCCTAGTCCAGGACACCATTAATTGG
GTTGCACGTATTAGTTATTTGTGAGCAGGTGTTGTTTACATAGTGTTGCTTGCTTCTCCTACTGGACTGATAATCTTGAT
TTCATAACTGAGAGAAATACTTATCTCTACTATATTGCATCATCCTCTCCACTTCGAGGAAATCCCAACGCAGATCACAA
GTAGCAGCCGTAGTCAAGCGTGTCGGTCAGGTCTTCGACCATGGCGACTAGATGGGTTGTGGGTGGGATGAAAATTTCTC
GATTGTCGGCTTTACATCCGATCTGATCATAAACGGCGGATGAGATTGTGAGGTTCTGGATCCGGTCAACCTCGTTTATA
TGCAAATACTCCTCAGTGTCGAGTACCTGGCTGTAAGTTGGACTGATCTGAAACAATTTGTTCG
>chr2B_2
-TGGACGGACCCGTGGTTGAACAGAGATGGAATAAGGACTCCAGTTACTCCCAGGGGTGGTTGTTTACTCACCCGAGTCT
GCAAACTCGTCAACCCAGACACACAAAATTGGGATGAAACCTTGGTGAATGACATATTCAGCCCTAAGGAAGCCAGCATT
ATTTTGGCAACCCCGGTCAGAGAGGAATGGGAGGATTTCTATGCATGGTACCATGACAGTAAGGGAGTTTTCTCAGTTAA
GTCGGCCTACCAAGTTTATATTAAGGGTAGGGATGCTGAACAGCCAGGGACCTCGAATGCCTTGCCAAACCGATGGGAGC
GGGCTCATATATGGAAGCTGCCCTGCCAACCAAAGATCCAACAATTCATATGGCGCCTAGCTCATAATAGCCTACCTCTA
AAACTGAATATGAAGCGTCGGGGTATCAAGTGTGAGACGCTGTGCGTCTGCTGCAAGCGCCTAGATGAGGATGGAGCACA
CCTATTTCTGAAATGCAAACAGGTGAAGAGGCTCTGGCGACTGCTGCAAGTGGAACAGATTCGCGAACAAATGTGTGCAT
GTCCTGACGCACACACACTGATGCATACCTTACTCCAGTTGCCAGAGGACAAAAAGATCCTAGTAGTATGCCTGATGTGG
TGCTGGTGGACATGGAGGAACAAAACCCATGTGGGTGAAAAAGTTGGGTTAGTTGACAACCTTGCAGCGGAGATCAACCA
CTGGGCTATGGAGTCCCTCGCTCTATGCCGTCAGCCCAACACAGCTACCAGTCAGCACCGTATACAGGAGTGGAGCAGAC
CCGAGGGGGACGGCCTGAAGATCAACGGTGATGGTGCTTTCTCGGCGACACGGGGAACGGGAGGCTGGGGCTTCGTCATT
AGAGACCACGCTGGAGATGTGTGGGGTTCTCGAGCAGGGTACCTTCATCATGTGGCATCCTCGATGCAGGCGGAAGCAGA
AGCGTGCTCTAGGGCGCTGGAAGCGGCGTCCAACTGGGGCATGACAAATGTGGAAGTGGAACTGGATAGTCAAGTGCTTG
TCAACGCCCTGAGAAGCAATGCAGCTGATCTGGCTCCGGAAGGAATCCTATTTCGGGAGATACGGGCCTTTGCTCGGTTA
AACTTTAGCAAAGTTACTTTCTCTTTCGCCCCAAGGGTTTGTAATAACCTGGCTCATGCATTAGCAACCTTTGGTGCTAG
ACGCCATGTGATTCACGAGCTTTGGTCTGAGGACATGCCGAATGATGTAAACGTCCGATTGGCCAGCAGCTTGGCTGGAC
CAGTTTAAGCTATGGAATCGCAGTGTTCCATTTCAAAGAAAAA-------------------------------------
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>chr7D_778
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---------------------------------------------------------CCAAGCCCAGGTGTGGAGAAGGC
CCGAGGGCGACCGCCTGAAGATTAACTGCGACGGTGCTTTTTCAGTAACACAGGGTACTGGCGGCTGGGGTTTTGTTATC
AGGGACCACGATGGTGACATCCGAGGATCCGGAGCTGGCTATCTGCGTCATGTGGCCTCCCCGGTGCGAACAGAAGCGGA
AGCATGTGCTATGGCACCTGAAGCAGCGTCAAACTGGGGCATGACTAATGTTGAGGTGGAGCTTGACTGTCAAGTGCTCG
TCAATGCACTGCGAAGCAATACTGCTGATCTGGCTC----GGGAATCTTGTTTCAGGAAATACGTACATTTGCCTGGCTG
AATTTCAATAGTGTTTCTTTCTCTTTTGCCCCGAGGGCATGTAATAATCTTGCTCATGCTTTAGCTGCGTTTGGTGCTAG
TCGCCAAGTAGTTCAGGAGTTTTGGTCTGAGGACCTTCCAGATGATGTAAGCGTCCGGTTGGCCAGCACTTTAGCTGGAC
CAGTGTGATCTATGGAATCTTAGTGTTCCATTTCAAAAAAAAAAG-----------------------------------
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>chr4A_782
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-------------------------------------------------------------GCCCAGGTGTGGAGAAGGC
CCGAGGGCGACCGCCTGAAGATTAACTGTGACGGTGCTTTTTCAGTAACACAGGGTACTGGCGGCTGGGGTTTTGTTATC
AGGGACCGTGATGGCGACATCCGAGGATCCGGAGCTGGCTATCTGCGTCATGTGGCCTCCCCGGTGCGAACAGAAGCGGA
AGCATGTGCTATGGCACTTGAAGCAGCGTCAAACTGGGGCATCACTGATGTTGAGGTGGAGCTTGACTGT-AAGTGCTCG
TCAATGCACTGCGAAGCAATACTGCTGATCTGGCTCCGGAGGGAATCTTGTTTCAGGAAATACGTACATTTGCCCGGCTG
AATTTCAATAGTGTTTCTTTCTCTTTTGCCCCGAGGGCATGTAATAATCTTGCGCATGCTTTAGCTGCGTTTGGTGCTAG
TCGCCAAGTAGTTCAGGAGCTTTGGTCTGAGGACCTTCCAAATGATGTAAGCGTCCAGTTGGCCAGCATTTTAGCTGGAC
CAGTGTGATCTATGGAATCCTAGTGTTCCATTTCAAAAAAAATAA-----------------------------------
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>chr3D_1401
TTTATAC-------------------------------------------------------------------------
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----------------------------------------------TAAATAGATCTAACTGAAAAAATATCACCTGATT
ATCCCACCGATCCGTGACGATCACCGAGCAGACTCTCAATGAAAGCACCATTGTCGGTTCTATATCCGGCATATCTCATA
GTAGGGGTCCTAAGCTAGGCGTCTTGGAGCGATGGTAACATGGACACGGGATTTTACCCAGCTTCGGGCTCTCTCGAAGA
GATAATACCCTACATGCTGCTTTTGATTGTATTCATATGGGGTGTA-GTACACAGTACATGTATCTACCACGAGATTGTT
CTCATGAATATGAGTTGC-CTATTGACTAGCCTGGCCTCGGTTTATATAAGACACCAGAGGCGTAGGGTTTTAGGGGAGT
CCGTGTCTTGGGCGCCAAGTCTTGTGGAGTCTTCCTTGTATGCGGGATGGGCTGTCC-GAACTGGCCCATGAATGAGCCG
CCATGGGGGTCCTCGGCCTGATCCAGCTGGTCGGGAGACGACGTGGTGAGTACCCCCTAGTCCAGGACACCATCAAT---
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>chr6B_1486
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---------------------------------------------------TGTCGGTTCTATATCTGGCATATCTCGTA
GTAGGGGGCTTAAGCTAGGCGTCTTGGAGTGATGGTAACACGGACACGGGATTTTACCCAGGTTCGGGCTCTCTCGAAGT
GATAATACCCTACGTCCTGCTTTTGATTGTATTCATATGGGGGGATTGTACAAAGTACATGTATCTACGACGAGATTATT
CTAATGAATAGTCGATCATCTATTGACTAGCCTGGCCTTGGTTTATATAACACACCGGAGTCCAAGGGTTTTAGGAGAGT
CCTCGGCTTGTGTGCCAAGTCTTGTGGAAACCTCCTTGTATACCTCAT-GGATGCCC-GAAGTGGCCCATGAGTGAACCA
TCATGGGGGTCCTCGGCCCGATCCAGCTGGTCGGGAGACGACATGGTTAGTACCCCCTAGTCCAGGACTG-ATTAGTTGG
GTTGCAAGTATTAGTTGTTTGTGTGCAAGTGTTGTTTACACAGTGTTGCTCGCTTCTCCTATTGGATTGATAACCTTGGT
TTCATAACTGAGGGAAATACTCATCTCTACTATACTGCATCATCCTCTCCTCTTGGAGGAAATCCCAACGTAGATCACAA
GTAGCAGCCGTAGTCAAGCGTGTTGGTCAGGTCTTCGACTGTGGCGACTAGATGGGTGGTGGGTGGGATAAAAATTTCT-
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>SNPs
S--------S--S-----S-----S------S-S-----S---S-S--S--S--S---S-S--------S-SSS----S-
-SS--S-S--S--S--S-----S--SSS----------S----------------S-------SSS-------S-SS---
--SS-S--S--S-----------S--S-SS-----------------------------------S--------S--S--
S--S--S---S-SS-S--S--S-S---S--------S-SSSS-------S----S-S-SS--SS---SSS--S------S
--S--S----S-----------S-----------S-S---S--S---S-------SS-S--S--------------SS-S
--------S--------------S--SS-S-----S---S----S--------------SS-S--S--------S--S--
---S-----------S-----S-----SS-SS-S-----SS--S----SS-S--SS-SS-S--S--S-----------S-
--SS-----SS--SS--S--------SSS--S--S---S----SS-S------S----S--S--S--S--S---S-----
S-S---------S-S----------SSS---SS--------S--S--SSSS--S--S-S-S-SS-S--S-----S--S--
S-S---S-----S-S---S-----S--S--S--S--SSSS--S--SS-S-S----SS-----------------------
------------S------------------SS-----------------------------------------------
-S------------------------------------------------------------------------------
------------------------------S------------------------------------------------S
---------------------S---------S------------------------------------------------
-------------------------------------------------------------------S------------
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---------------------------SS----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------S---------------S--
------S--------------S---S-S---S------------------S-----------------S-----------
--------------------------------------------------------------------------------
---------S--S--------------------------S-------S----S--------------S--S---------
---S--------S----------SS-----------------------------S---------------------S---
---------------------------------------------------SSSS-SS----------------------
-----------S-----------S----------------------------S---------------------------
------S---------S------S---S------------S---------S----------S----S------S----S-
------------S--------S------------S---------------S---S---------------S---------
-----------------------S---------------SS----------------S-----------S---------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_475
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-------------------------------------------------------AGCGTTTTGACGAGGATGGT-----
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>reverse_2218
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---------------------------------------------------------GGATCCGGTCAACCTCGTTT---
----------------------------------------------------------------
