>input_sequence_84942
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-----------------------------------------------------------ATGAGGAGATCCTCCCAGCAG
CACTCCTTGCTCCCCTGCATCA---TCCTCCTCCTGCTCCTTGTTTCCATGTCATGCTTGCCGAGCTCGAGCCATGGCCT
GAGAACGCTGAGGGAGGAAGAAGAAGCGGTCGGTGAGCTCATCAAAGGCCAGCATGAGCTTCCCCCAACCATCTCCCCTA
CTCAACAAGCAGGCGGCGATGACGTTGCGGCCGCCAACGACATCGGTGCCGGGAAGTTCACCGTCTCGAGGAGAGCGGTT
CCTCAGGGGCCCAACCCTCTGCACAACTGA--------------------------------------------------
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>chr6A_1_TraesCS6A01G409300
TCCCACCAGGCGTGGGGTCTACGCTGCTGGGGAATCTACTGCTGCTGCTAATTAAGCTTGAGCTACCACCATGCATGCAC
TGAAAGTCTAATGTGAGGGGACATTTCCTCTCACCCTATTATATTTATTTATTTTGAAAAGTTCACCCTATTAGATAGAT
AGATAGATAACTTGTGTCTATGACCAAAGGCATGGGGCTCCTGCTAATTAAGAAATCAAGCTTGAGCCTTGAGCTACTGC
CATGCTCTGAAAGTCTAATGGTG----GGAGACATCTCCATTCACCCTATAGTTAACTTGTGTCTATAACCAAGGGCATG
GGGCTCCTGTTGACAGGGCCATTGGTTTCCTTTGGTTGCTTGCCTGGGCAGGCTAACATGATGGCATGGAGGACTTGCTG
CCACAAGCAGCCAAGGTTGTCAATGGCCCCTGCTCAGCCCAGCCCAGCCATTTTTCTAAGCACCATGAGTTTCATGT---
ACATATTTTTACTTTCTATATATATGC--------ATGTAGCCTAAAGTGCACTGCTTTTCCTCAAAGAAACCTTGCTAG
CACCTGCTCCCCTTTCTAGATCACCAAGTCCATGGATGGGACACTTGGAAGATACTAAAGAGAGATATCCCATATCTGGT
CAGTAGGATTAGCCATGCCCATGCATGCTTTTCCCCTAACCATGGATGGCAGGTGGATCCCATGCCCAGGCTCTGGTCTC
CATATCCAAGAAATTCAGGAAACATGGGTT--TTCTTTCCTGGGGGGAATCAGTGGGCCCCACATGCCAAACTTTTAGTG
AACCAAACACATTACCAT--ACCATGTAGTCAGAGTCACTGGAGTACTACTGCTACTACTATAGGCCATATATAGGATGG
AGGATGGAGGATCACTCGGTGTCCATTTCTTGTTACCTGTGTCTCCTCTTATTAGTGGCCTCTCTCCCCCAGCTGCTAAA
TCCATATTAATACCCTCCTCCTCCCCTGCTCCTCTCTCTCTCTCCCTCTCTCTCATGCCATGAGGAGATCCTCCCAGCAG
CACTCCTTGCTCCCCTGCATCA---TCCTCCTCCTGCTCCTTGTTTCCATGTCATGCTTGCCGAGCTCGAGCCATGGCCT
GAGAACGCTGAGGGAGGAAGAAGAAGCGGTCGGTGAGCTCATCAAAGGCCAGCATGAGCTTCCCCCAACCATCTCCCCTA
CTCAACAAGCAGGCGGCGATGACGTTGCGGCCGCCAACGACATCGGTGCCGGGAAGTTCACCGTCTCGAGGAGAGCGGTT
CCTCAGGGGCCCAACCCTCTGCACAACTGACGAGGA--------------------TCGCCGCCATCGGCGCCGGTGGAT
CTCTGCATCAGGTTCATGGCGCTCACCATGGCCACCAGATACATATACAGTACTATACCCTTTTTTTGTCCTCCCCCCAT
TT-TTTT---AGCTGGCTAGCCTAGAAAGATGATAATACGGTACAGACAGGCC---GTACCACCATTGATGTGTGT----
----TCATCAATACCC-----------------GTGGCTCCCTCCCTCCCTC------------CATGGCATGCTTCCTT
CCCTGCATGATTAGCTGTATCTCTTGTGTATATATGCAGTGATTGATGTTACAAAGACTTGAAAG-TTGTTGGTCGAGCA
TTTACATGCTGCTCCCTC----------------TGTACACTAATGTAAGACGTTTTTCCCGTTCAAATTGAACCGCAAA
AAACGTTTTATATTAGCGTACAAAGGTATAAGAGCGTTTTTCAGACTAGTATAGTGTCAAAAACGTTATTATATTATAGA
ACGGAGGGAGTAGTACATAGTAGGGGCGCCTTTGTAATCACGGTTGCATGGGATCTGAAATTCTGAAATGGTATTGTTGT
TGC----------TTTTTCGTTGTGTGAAGAAATTAATTAAGCTGTTTTTTGGGGCTGTGATATAATATCTCGTGGTTGT
TGGAGAGCTCCCATCTAGTA-----------GTATCTGCTGATCTATAAAGAGGAGCAGTCTGGAGGCGCATGTGAATGC
TTGCTTAATCAACCCCGTGAT-----CAGGTGCTGATTAACTAATCACGGGTTGATTAAGGCGCCTCCTCTCCTTTTTCT
TGCAAATATTCTG---GCCATCTTTTCAGAGACGGACGGACCGACTGAAGCAAAGCAGAGTAAGGGCTCCTTTGATTCAA
AGAAATCGCATAGGATTTTTTGGAGGGTTTGAACTCTTAGGAATTTTTTCATGTTATGCTCGTTTGATTCGTAGGATTGG
CATCTTTAGGAATTTTTCTATAGGATCCATTTGTACTACATTTTAGAGAAAAATTTCCATTCACTCAAATCTCTTTGTAG
AATGCCTTTGTTTTTCCTGC
>chr6B_1
TCCCACCAGGTGTAGGGTCCACGCTGCTGGGGAATCTACTGCTGCTGCTAATTAAGCTTGAGCTACCGCCATGCATGCAC
TGAAAGTTTAATGGTAGGAGACATCTCCTTTCACCCTATTAGATTTATTT-TTTTGAAAAGTTCACCCTATTAGATA--T
AGATAGATAACTTGTGTCTGTGACCTAAGGCATGGGGTTCCTGCTAATTAATCAATTAAGCTTGAGCCTTGAGCTACTGC
CATGCTCTGAAAGTCTAATGAAGGGTAGGAGACATCTCCATTCACCCTACAGTTAACTTGTGCCTATGACCAAGGGCATG
GGGTTCCTGTTGACAGGGCCATTGGTTCCCTTTGGTTGCTTGGCTGGGCAGGATAACATAATGGCATGGAGGACTTGCTG
CCACAAGCAGCCAAGGTTGTCGATGGCCCCCTGCACT----GCCCTGCCATTTTTCTATGCACCATGAGTTTCATGTAGT
ACATATCTTTTCTTTCTAGACTAGATATGTAGTTTATGTAGCCTAAAGTGCACTGCTTTTCCTCGCGGAAACCTTGCTAG
CACCTGCTCCCCTTTCTAGATCGCCAAGTCCATGGATGGGACACTT-GAAGATACCAAAGAGAGATATCCCATATCTGGT
CAGTAGGATTAGCCATGCCCATGCATGCTTTTCTCCTAACCATGG----CAGG----TCCCATGCCCA-GCTCTGGTCTC
CATATCCAAGAAATTCAGGAAACAAGGATTTTTTCTTTGCTGTGGGG-----------CCCACATGCCAAGATTTTAGTG
AGCCAAACACATTGCCATACACCATGTAGTCAGAGTCAGTGGAGTACC---------ACTATAGGCCATACTATAT----
AGGATGGAGGATCACTCGGTGTCTATTTCTTGTTACCTGTGTCTCCTCTTATTAGTGGCCTCTCTCTCCCAGCTGCTAAA
TCCATATTAATACCCTCCTCCTCCCCTGCTCCTCTCTCTGTCTCTGCG--TCTCATGCCATGAGGAGGCCCTCCCAGCAG
CACTCCTTGCTCCCCTGCATCCTCCTCCTCCTCCTGCTCCTTGTTTCCATGTCACACCTGCCGAGCTCGAGCCATGGCTT
GAGAACGCTGAGGGAGGAAGAAGAAGCGGTCGGTGAGCTCATCACAGGCCAGCATGAGCTTCCCCCAACCATCTCCCCTA
CTCAAGAAGCAGGCGGCGACGACGTTGCCGCTGCCGACGACATCGGCGCCGGGAAGTTCACCGTGTCGAGGAGAGCGGTT
CCTCAGGGGCCCAACCCTCTGCACAACTGACGAGGA-----------------GGATCGACGCCATCGGCTCCGGCGGAT
CTCTGCAGCAGGTTCATGGCCCTCACCATGGCCACCAGATACATATACTATACCCTT---TTTTTTTGGT---CCCCCAT
TATTTTTTTTAGCTGGCTAGGCTAGAAAGATGATAATACGGTACAGACAGGCCGTAGTACCACCATTGATGTGTGTGTGT
----TCATCAGTACCC-----------------GTGGCTCCCTCCCTCCCTC------------CATG------------
---------ATTAGCTGTATCTCTTGTGTATATATGCAGTGATTGATGTTACAAGGCCGTGAAAG-TTGTTGATCAAGCA
TTTACGTACTACCACTCACTACTCCCTCTGTACATGTACAGTAATGTAAGGTGTTTTCGCAGCTCAAATTGAACCGCAAA
AAACACCTTATATTAG----------------------------------------------------------------
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>chr6D_1
TCCCACCAGGTGTGGGGTCTACGCTGTTGGGGAATCTGCTGCTGCTGCTAATTAAGCTTGAGCTACCACCATGCATGCAC
TGAGAGTCCAATGGTAGGGGACATTTCCTTTCACCCTATTAGATAGATGGATGAAC------------------------
----AGATAACTTGTGTCTATAACCTAAGGCATGGGGCTCCTGCTAATTAAGAAATCAAGCTTGAGCCTTGAGCTACTGC
CATGCTCTGAAAGTCTAATGGTG----GGAGACATCTCCATTCACCCTACAGATGACTTGTGCCTATGGCCAAGGGCATG
GGGTTCCTGTTGTCAGGGCCATTGGTTTCCTTTGGTTGCTTGGCTGAGCAGGCTAACATGACGGCACGGAGGACTTGCTG
CCACAAGCAGCCAAGGTTGTCAATGGC-CCCTGCTCA----GCCCAGCCATTTTTCTATGCACCATGAGTTTCATGT---
ACATATCTTTACTTTCTATATATATGC--------ATGTAGCCTAAAGTGCTTTTATTCTCAGAAATCT--------TAG
CACCTGCTCCCCTTACTAGATCACCAAGTCCATGGACGAGACACTTGGAAGATACTAAAGAGAGATATCCCATATCTGGT
CAGTAGGATTAGCCATGCCCATGCATGCTTTTCTCCTAACCATGGCAGGCAGG----TCCCATGCCCAGGCTCTGGTCTC
CATATCCAAGAAATTCAGGAAACATGGATT--TTCTTTGCTGGGGGGAATCGGTGGGCCCCACATGCCAAACTTTTAGTG
AACCGAACACATTACCAT--ACCATGTAGTCAGAGTCAGTGGAGTACTAC---TACTACTATAGGCCATATATAGGATGG
AGGATGGAGGATCGCTCAGTGTCTATTTCTTGTTACCTGTGTCTCCTCTTATTAGTGGCCTCTCTCCCCCAGCT---AAA
TCCATATTAATACCCTCCTCCTCCCCTGCTCCTCTCTCTCTCC----CTCTCTCATGCCATGAGGAGATCCTCCCAGCAG
CACTCCTTGCTCCCCTGCATCCTCCTCCTCATGCTCCTCG------CCATGTCACACCTGCCGAGCTCGAGCCATGGCTT
GAGAACGCTGAGGGAGGAAGAAGAAGCGGTCGGCGAGCTCATCAAAGGCCAGCATGAGCTCCCCCCGACCATCTCCCCTA
CTCAAGAAGCAGGCGGCGACGACGTTGCCGCCGCCGACGACATCGGCGCCGGGAAGTTCACCGTCTCGAGGAGAGCGGTT
CCTCAGGGGCCCAACCCTCTGCACAACTGACGAGGATCAACGCAGGGTCACGAGGATCGTCGGCATCAGCTCCGGTGGAT
CTCTGCAGCAGG-----------CACCATGGCCACCAGATACATATACTATACCCTT---TTTTTTTGTCCTCCCCCCAT
TA-TTTTTTTAGCTGGCTAGCCTAGAAAGATGATAATACGGTACAGACAGGCCGTAGTACCACCATTGATGTATGTATGT
ATGCTCATCAATACCTGTGGGCTGTGTGTGTGTGTGGCTCCCTCCCTCCATTCCTGCTTCCTTGCATG------------
---------ATTAGCTACAGCCCTCGTGTACATATGCAGTGATTGATGTGGCCAAGGCGTGATAGTTTGTTGGTTAAGCA
TTTACGTACG---------TACTCCCTCCGATCCATAATAAGTGTCGTGGTTTTGAACTAAGGTTGGATTAAGCTTAGTT
CAGAACCGCGACACTTATTTTGG----------------------------------------------------ATCGA
AGGGACGGAGTACTAAATAGCAGTGTCTTTACAATCGTGTA-GTTGAGTAGGATCTAAAATGCTGAGATGTTGTTGCTGT
TCTTCTTTTTCTTTTTTGCCTTATCTGAAGAAATTAAGTAAGCTGTTTTTTGGCCAGTG------ATATCTTGTGGTTGT
TGGAGGGCTCCCATCTAGGAGTAGTAGAGTGGTATCTGCTGATCTATAAAGCAG---AGTCATGAGGCGCATGTGAA---
-TGCTTAATCAACCCCGTGAGCGGAGCAGGTGTTAATTACTTAATCACGGGCTGATTAAGGCGCCTCCTCTCCTTTTTCT
TGTAAATATTTTGGGAGCAATCTTTTTCGAGA--GATGGACTGGCTGAAGCAAAGCAGAGTAA-----------------
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>SNPs
----------S---------------------------------------------------------------------
-------------SS--------------S-----------S-----------------------------------SS-
-------------------------S------------------------------------------------------
-------------------------------------------------S------------S----S------------
---S--------------------------------------S-------------------------------------
------------------------------SSSSSSSSSSS-----------------S---------------------
------S-----------------------------------------------------------S-------------
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---------------------------------S-----------SS------SSSS-----------------------
---------------------------S----------S------------S----------------------------
--------------------------------------S-----------SSS---------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------SSS---------------------------------
---------------------S--------------------------------SS-S--------------------S-
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-----S-------------S--------S------S----------S---------------------------------
-----------------------------------------------------------S----------S---------
-------S------------S---------------------------SS---SS-SSSS--------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------SSSSSSSSSSSS
SSSSSSSSS-----------------------------------------------S-S----------------S----
-----S-S--S-SS-SSS----------------------S---------SS-----SS-S-S-----------------
----SSS---------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--
-S---S------S--S----S--S-S-SSSSSSS-SS-SSSS----SS-S------S----S----S---S-S---S---
-SS--------------S-S--S-S------------S---------------SSSSSSSSSSSS------S--------
-----S------------S--------------------------------SS-SSS----SS--------------SSS
S-------------------S-----------S-S----SS----------S----------------------------
--S-------S-------S-------SS----SS--S----S-S-------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_324
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----------------------------------------------------------------TATAACCAAGGGCATG
GGGC----------------------------------------------------------------------------
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>reverse_1856
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---------------CATAGTAGGGGCGCCTTTGT---------------------------------------------
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