>input_sequence_84939
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------------------------------------ATGGCGGCGCCGTGGAGCGAGAGCGAGAACGAGAGGTTTGAGCG
CGCGCTGGACACGTACGACCGCGACACGCCCGGCCGCTGGGACCGCGTCGCCGCCGCCGTCGGGGGCGGCAAGACGGCCG
ACGACGTCAGGCGCCACTACGACCGGCTCGTCGACGACCTCCGCCGCATCGAGGC---CGGCGCCAACTCCAATGGCGGA
ACTCATGA---CGCCGGCAGCAGCAGCAACGGCGCGGGGAATAACGGAAGCAGAGGAGGGTCAGGGGGCAGCCGGCGGCC
CCAGACATAA----------------------------------------------------------------------
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-----------------------------------
>chr5D_1_TraesCS5D01G564600
AGGTGCAGGGCGCATGCGTCAGCGCAC------TG----ATATAATCGCCTTGTTTAGCCGATGCACAATATC----TGG
AGAAATCTATGCGGGCATACATGGTCCTCGTACGTACATTATTCCTTTGGAGAAAGTTATTATTATGGTGGTTAATTAAA
AGGCAGATTAAGTTGTCGTTTCATGTCTAGTTTATTAG------------------------------------------
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----------------------------------------------ATGCCCTGGCCTTTAGATGCATATTGGGCACAAA
GGCAGATTTGACCCTGCTAATTAGCCTACTTATATAAAATTGCGAGTGCTATTGTTTTTGCCCCTGGTGGATGGATGAGA
ATGGGAA---TGGAACCTAGCTATATGGAGTATCCTCGTCTATGTATTACTCCCTCGGTTCCTAAATATTTGTCTTTTTA
GAGATTTCAAATGGACTACCATATTTTAAAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCACTTGTTAAAATCTCT
AGAAAGACAAATATTTAGGAACGGAGAGAGTACTTAGTAGCAATGGGCCATGCATGCCACCAAATTTGGACATGGTTGGC
TAAGCCTATCATGTTAATTAATTTTCAGAAAGATAGAGGATCTAGATTCTGATTACTAATTAGATGTACT----------
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-TATTGGGTTTCCCAGAATTTACTGTGCCTTTAACCTTTGGTAGTCAACTGAAGCATTTTGGTTTTGTGTAAAGATATAT
ACTACCCCTACATGGGATGGGAATAAAACGCCGTCCAATAGTCTTGCTCGCCAATGCTAATCTAGGTAGGTAGCTTAGCC
ACCTCCGGATTCAATTCCTGCAACTTGCAACTAGATTAACATTGTGACATCCATTATAGC-----------------GCA
TTTGCATCTTGTTTAGTTAACTGATTT----------AGCTAGCTAGCTATTCCCTCCGTCCCATAATATATTAGGAAGT
ACTATAAATATGGAGCACTTGGTTTGCAATGACACACACGCACGTA---CGCAGAGACAAATTCAAGAAA----------
TAGCTCAGCTTAATCTGATCGGTAGATCGACCGGTCATGGCGGCGCCGTGGAGCGAGAGCGAGAACGAGAGGTTTGAGCG
CGCGCTGGACACGTACGACCGCGACACGCCCGGCCGCTGGGACCGCGTCGCCGCCGCCGTCGGGGGCGGCAAGACGGCCG
ACGACGTCAGGCGCCACTACGACCGGCTCGTCGACGACCTCCGCCGCATCGAGGC---CGGCGCCAACTCCAATGGCGGA
ACTCATGA---CGCCGGCAGCAGCAGCAACGGCGCGGGGAATAACGGAAGCAGAGGAGGGTCAGGGGGCAGCCGGCGGCC
CCAGACATAAATG-------ATGGAT-----GGATCGGATCATGCAAGGTGGTGGGCTGGTCGGCACAGACGACG---CT
GACATGAGTCTATCCTAATCCTATCTAGTACATCTGATCTGCATTACATACAAACGTACGT-------------------
--------------------------GGGTGCGTGCATGTACTATCTGTCACGTGTACGTACGTACG-----TACGTACC
TACATGCATGCATGTCTACGTGCAAGAGTGCAACACACTGTGCTGGCCTTTTTATCTGTTTGCGAACTAATTAACAGTGT
GCTAGCTGGTTATTAGTAACTACGTATATGTGTGTGTGCGTGCTGCCATGTACGTACGTCTACGTTTTGTACGTCTGCTT
GTAGATTGTAAATTAAATAATCCATGCATGTGCTTCGTTGAAGAAGAAAAAGATAACCCGGCCGTGTGCAAGTCATTCGT
ACACGCTAATTAAGTACTTGTGTGTTTGTAAACTAATATAAGATGTTTTAGATCCCTAAAGTAGAGGGAGTAACATATTT
TCTCTTTGTGAAAATATTTCCTTGCTCTTTTGGCCAGGAAGTAAGTAGCACATTCATTCTTCATGAGCATCACGTCTTTC
CGGGGCGAGGATGGGCCATCTGATGCTACGGGTGCACCAGCTCAATCTGAGCCGCCGGATGCACAATAGAGGGACCAGAT
TGCATAAACATATGGGCTGCTGGTACATATTTTACGTATTGCTCCTCAGAAATCGTCAATTTGCGCAAACAGTCATCCTC
CAAGACATGGTCTCTTTCCTTGGCATCTCGTCTTCCTCTGCTGTACCTGAGCGTGCCATGGCGCGAGTAGGGTTAGCGAT
TCCTCTCGCCGCCTCTCTCTCCCGCTCCCCTCTCTCACTTGTACCTAGTTCCGTTGCCGGTGAAGCACCAGCGCCCCTCC
TCTTCTCTGAAACGGTCGTCCTCGGTGGAGCTTCCATTGCCGCCGGCGAGCCCAAGGGAGAAGGTCGTGCCGGGTGGAGC
TTCCATCGCCCGCTCTCTTGGCCCACCCAACTTTC
>chr4A_1
AGGTGCAGGGCGCATGCGTCAGCACACTGACTTTG----ATATAATCGCCTTGTTTAGCCGATGCACACTA---------
AGGAATCTATGTGCACATACATGGTCCTCGTACGTACATTATTCCTCAGAAGAAAGACATTATGGAGG-------TTAGA
AGGCAGATTAAGTTGTCGTTTCATGACTAGCTTATCAGTTTTGCTAAGTCTCGGTTGACTGAGACTTCATTATGTTTCGG
TCGTTGCTATATTCTTTTGATTTTGCATGGAGATTCGTACATATTTTTTCATTTCAGTTTTTTTTTCATTTCTTTTTTCT
TCAA-----GTCAAAGTCGATTGAGACCTAGCCACACCCCTAGTTCATGCCCTGGCTTTTAGATGCATATTGGGCACAAA
GGCAGATTTGACAATGCTAATTAACCTACTTATATAAAATTGCTAGTGCTATTATTTTTGCCTCTGATGGATGGATGAGA
ATGGGA---GTGGAACCTAGCTATTTGGAGTATCCTCATCTATATATTAC------------------------------
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-------------------------------------TAGCAATGGGCCATCCATGCCACCAAATTTGGATATGGTTGGC
TAAGCTTATCTT----ATTAATTTCCATAAAGACAGAGGATCTAGATTCTGATTTATTAGATCCCCTATTATTGGCAAAA
CC------------------------------------------------------------------------------
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--ATTGGTTTTCTCAGAATTTCTTGTGCCTTTAACTTTTGTTAGTCAACTGAAACCTTTTGATTTTGTGTGATAAACATA
TA------TACATGGGATGGGAATAAAATGCCATCCAGTAGTTTTGCTCGCCAATGCTAATCTAGGTAGGTAGCTT----
-------GATTCAATTCCTGCAATTTGCAACTAGATTAACATTGTGACATCGATCGATTACCTTTTGCATCGCATTTGCA
TTTGCATTTGGTTTAGTTAATTAATTTCCTACGGTCGAGCTAGCTAGTATAAAT--------------------------
-------ATATGGAACACTTGGTTTGCAATGACACACACGTAGGCCAGTCGCAGAGACAGATTAAGAACACCCATCTGGC
TAGCTCAGCTTAATCTGATCGGTCAT---------------GGCGGCGTGGAGCGAGAGCGAGAACGAGAGGTTCGAGCG
CGCGCTGGACACGTACGACCGTGACACGCCCGGCCGCTGGGACCGCGTCGCCGCCGCCGTGGGCGGCGGCAAGACGGCCG
ACGACGTCAGGCGCCACTACGACCGGCTCGTCGACGACCTCCGCCGCATCGACGCCGGCGGCGCCAACTCCAACGGCGGA
ACTCATGCCACCGGCGGCAGCAGCAGCAACGGCGCGGGGAACAACGGCAGCAGAGGAGGGTCAGGGGGCAGCCGGCGGCC
CCAGACATAAATGGTAGTTGATGGAT-----GGATCGGATCATGCAAGGTGGTGGCCTGGTCGGCACAG--GAGGACACT
CACATG-----AGCCCTATCCTAATCTAC-------ATCTGCATTACATACATACATGTAGCGTACGTGTATATGTACAC
GTACGCACGTCATGCACATTGCTAGCGGGTACGTGCATG---TATCTGTCACGTGTACGTATGTACTCCACTTACGTACC
CGTATGCATGCATGTGTACGTGCAAGAGTGCAACACACTGTGCTGGCCTTTTTATTTGTTTGCGAACTA-----------
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>chr5B_1
AGGTGCAGGGCGCATGCGTCAGCGCACTGACTTTGATATATATAATCGCCTTGTTTAGCCGATGCACAATATATATTTGG
AGGAATGTATGTGCACATACATGGTCCTCTCGA---------TCGTACGTACAAAGTTATTATGAAGC-------TTAAA
AGGCAGATTAAGTTGTCGTTTCATGTCTAGTTTATCAGT-TTGCTTAGTCCCGGTCGATCGGGACTTCGTTATGCCTTAG
TTGATGCTATATTCCTTTGATTTTGAATGGAGATACGTACAAAATTTTTCCTTTTAGTTTTTTTTCCTTTTTCTTCTTAT
ACTAGCTAGGTCTCAGTCCACTGAGAGCTAGCCACACCCCTAGTTTATGCCCTGGCCTTTAGATGCATATTGGGCACAAA
GGCAGATTTGACAATGCTAATTAACCTACTTATATAAAATTGTGAGTGCTATTATTTTTGCCTCTGATGGATGGATGAGA
ATGGGAGTGGTGGAACCTAGCTCTTTGGAGTA-----------------C------------------------------
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-------------------------------------TAGCAATGGGCCATGCATGCCACCCAATTTGGACATGGTTGGC
TAAGCTTATTTT----ATTAATTTCCATAAAGACAGAGGATCTAGATTCTGATTTATTAGATCCTTTATTATTTGCAAAA
CGACTTCCTCCGTTGCTAAATATAAGTCTTTTTAGAGATTTCACTATAGAGACTATGTTCAGATGTATATAGACGTCTTT
AGAGTATAGTTCACTAATTTTGCTCCGTATTTAGTTTATAGTGGAATCTCTTAAAAGACTTATATTTAGGAACGAAGGGA
ATATTGGTTTTCTCGGAATTGATTGTGGCTTTAACTTTTGTTAGTCAACTGAAGCCTTTTGATTTTGAGTGATAAACATA
TA------TACATGGGATGGGAATAAAACGCCGTCCAATAGTTTTGCTCGCCAATGCTAATCTAGGTAGGTAGGTAGCTC
C------GATTCAATTCCTGCAATTTGCAACTAGATTAACATTGTGACATCGATCGATTGCCTTTTGCATCCCATTTGCA
TTTGCATTGTGTTTAGTTAATTGATTTCCTACGGTCGAGCTAGCTAGTATAAAT--------------------------
-------ATATGGAACACTTGGTCTGCAATGACACACACGTACGCCAGTCGCAGAGACAGATTAAGAACATCCATCTGGC
TAGCTCAGCTTAATCTGACCGGTCAT---------------GGCGGCGTGGAGCGAGAGCGAGAACGAGAGGTTCGAGCG
CGCGCTGGACACGTACGACCGCGACACGCCCGGCCGCTGGGACCGCGTCGCCGCCGCCGTCGGGGGCGGCAAGACGGCCG
ACGACGTCAGGCGCCACTACGACCGGCTCGTAGACGACCTCCGCCGCATCGAGGCCGGGGGCGCCAACTCCAACGGCGGA
ACTCATGCCGCCGGCGGCAGCAGCAGCAACGGCGCGGGGAATAACGGCAGCAGAGGAGGGCCAGGGAGCAGCCGGCGGCC
CCAGACATAAATG-------ATGGGTGGATCGGATCGGATCATGCAAGGTGGTGGCCTGGTCGGCACAG--GACG---CT
GACATG-----ATCCCTATCCTATCTACGTCTTCTGCATTCATACATATACATGCATGTAACGTACGTG-----------
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-----------------------------------
>SNPs
------------------------------------------------------------------------S-------
--S--------S-SS-------------------------------SS-S-------------S-S--SSSSSSS-----
-----------------------------------S--------------------------------------------
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------------SS---------S-----------------------------S--------S---S-------------
------S-----------------S------------S-----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
-----S----S-SSSS--------S--S-----S--------------------SS-S-SSSSS-S--S-----------
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-------S----S---------S------------S----S--------------S-----S--------S-SS-SSSSS
SSSSSSSS----------------------------------S---------------------------------SSS-
SSSSSSS----------------S---------------------------S--SSSSSS--------------------
-------S------------S--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------S-------------------------S---SS-------------S---S-SS-S-----------
-----------------------SSSSSSSSSSSSSSSSSS----S----------------------------S-----
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-------------------------------------------------------------------------S------
-------S-----S---------------------------------S--------------------------------
-------------------------------------------------------S-------------SS---------
------SSSSS----SS----------SSS-S--------------------S--S-SSSS-------------------
------------------------------S--------SSS-------------------S----S-------------
SSS------------S---------------------------------------S-------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1265
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---------------------------------------------AGCTATTCCCTCCGTCCCAT---------------
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>reverse_2542
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-------------------------------------------------------------CGCGAGTAGGGTTAGCGAT
T-------------------------------------------------------------------------------
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-----------------------------------
