>input_sequence_84932
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-ATGGGATGTAGCAAAATTGAGATCAATTCGAATAGCATGAAAGTT----------------------------------
--------GTTGAAGCTCTGAATGATGGTAGTTCATCATCGGTGGCCAGTGCTATTTTTTATGACTG-TTT-TTTTATGT
CTCTTGATTTCAATCATGTAACCTATGCTCATTGCAATAGGGAAAGTAATCAAGTAGCTCATGAACTGGCTAGGATAGCT
AGATTTTCACCTCCTTCTGTTTGGATGGATTCAACACCGGATGAGGTGATTTCCATGCTTGTAAACGATGCAACTTTGAT
AGCGAGTGAATAA-------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G211600
GGTGGG-AACGCGTGCGTTGGCGAGAGCTTGGAGGAGAGAGCAGGGGAAGGCTGGC--GGGCGGCGGCGGCGAAGCGGTG
GTGCTTATTATACGGATATGGAGATTGGGAGGGAGATTTGAGAGTGAATACTAG---GAAAGTGACGCCGTAAAATGGGG
ACGCTAACGGCGAGGGGAGGCTGCGTGCGCTGTCGAAACCCCGTTTCCTTCCTCCTTTCGGTCTCGCCTTGTGTACGGTG
GATATCTATATAGGAGTACCTATAAAGGATGGATGATTATTAATCCAAGGAAATATGGAATGGATGTGGATGTAATCTTA
TCTGTAGCACTTAATGATATCCATCTTTTA-TCTCTTCTCTTTTGGTGATTATTAACAGCCCCGGTTGTGAAAA------
--------------------TTAATAACAGCCCGTGAACGTGCGGAACCAGGTCGTATGAGTTACGACTCGCTTCGCACC
GCACGACTGTCCACGCAACGCGCGTGTTCT--ACACACGTGTAAATGGACGGTACTTAAAATGAAATGAAATGAAAAAAT
ATATGTTTGCAGTTGTTGATAATGGGCCATTATCAATGGCATATAATGCCAGGTTTTAAGTATACTTATTTCACTAAGTT
CAATTTTGAAGGAGAAAGCTTGGGAAAGATCAATGAAAATCTATCATA----AAGATATGCCTTACAATTGATGACAATT
ATGAAAAAGTAACATAATTCTTGTAAAAAGGGATGTGGAGAGTAAATGATGATTGTTGACGGTAAGGAAAATACGTTAAA
GATAAACATAACCTTATCTAGTTAATTTACCTGATTGGAAAAAACCTAAGTTCGGTTATATGAAGCTGAATGTGGACGCG
GGTTTTGATTTTGATTCAC-TTGTGGGGACCGT-GGGGGCTGTTACCCGAGACCACAATGGGAAGTCCATTGCCGCAGCA
AATGAAAAGATGAAGATTTGCTATGATTCATTTACAGCAGAAGTCGTGGCAGTGAGATTTGGCTTGAATCTTGCACGTAC
TATGGGATGTAGCAAAATTGAGATCAATTCGAATAGCATGAAAGTT----------------------------------
--------GTTGAAGCTCTGAATGATGGTAGTTCATCATCGGTGGCCAGTGCTATTTTTTATGACTG-TTT-TTTTATGT
CTCTTGATTTCAATCATGTAACCTATGCTCATTGCAATAGGGAAAGTAATCAAGTAGCTCATGAACTGGCTAGGATAGCT
AGATTTTCACCTCCTTCTGTTTGGATGGATTCAACACCGGATGAGGTGATTTCCATGCTTGTAAACGATGCAACTTTGAT
AGCGAGTGAATAAAG-AGGTGATTTTGGTAAAAAAAACTGTAATTGTAAAAGCTTACATGATGTAAGGAAAGTGAATTGG
ATGGAATTTTTGT-ATCTATGTCTTAATAATGGGACATTATTAATGGCAGATTATGCATATTTTGATGTAAGAGTACTTT
ATTTGCTTATATA-------TTTGTTATCAATGCACTTGATGCACATGCTTGACTTTAGATACTTGAGGAAGTATATA--
TAATATAAGAATACTTCAATATTACAAGATAACATTAAATACTCAA-------------------------TCTATATGG
GCACAATCCTTGAGATGCTACTTTGACCGTTGTTTAAAATTTATATACTTGTTATAAGATATTTAAATTCAAGAGAAAAA
ATATGGGTAGTCTGATGATGGTACAGTG-------------TTTGCCTAGCATGTTAATTATTTGTCAAAGCTAGACAAG
ATTTGGTTGTAGTTTAATGTGAAAGCGTGCATTTTATAATGTAGATAGTAACACTATGTGTTGAGGTTTAAGAATAAACT
TTCAACTAGGGGGTATTCTTAGTAGTGTGGTTAGTAAGCTTGGCGTGTACGACGACCTTATGTCGATGATCGTCGTACAC
TTGACAAAGTGACACGGAGATGTTCTTAAATTAGGTTCAACTGCCTCGAGGGAGCACGTCCTATGTCCTATGGGAGGGTC
GTTGAGAGTAGTGCCCGGGGCATGGGACACTACAAGTGCTTCCTCCTCACGGGTTGCCACTGCACAGGATCTCACCCGGT
TTGCTCATACTGTTGCTTCTTTTCATCATCAATAAGAAGGATAAAACATGCTCTTTCGTGGGTTCAATAACTTGTTCAAG
ATTTGCAAGTCCAACCAGGCACGTCACATCAAGGATGCAAACTGGAGCAAGAAGTTGCGCTGAGAGTAGAATGCAACGAA
AGCCTGAACTCTAGAGAGCCTAGCCACCTGGACGTGAGGATGTTGACAATGTTGTCACGGACTACTCCAACGCCTACCTT
GGCTATATCCCAAAGGATGAGG
>chr5B_1
GGTGGGAAACGCGTGCGTTGGCGAGAGCTTGGGGGAGAGAGCAGGGGAA----GGC--GGGCGGCGGCGGCGAAGCGGCG
GTGCTTATTATACGGATATGGAGATTGGGAGGGAGATTTGAGAGTGAATACTAGTAGGAAAGTGACGCCGTAAAATGGGG
ACTCTAACGGCGAGGGGAGGCTGCGTGCGCTGTCGAAACCCCGTTTT----CTCCTTTCGGTCTCGCCTTGTGTACGGTG
GATATCTATATAGGAGTACCTATAAAGGATGGATGATTATTGATCCAAGGAAATATGGAATGGATGTGGATGTAATCTTA
TCTGTAGCACTTAATGATGGCCATTTTTTGCTCTCTTCTATTTTGGCAATTATTAACACCCGCGGTTGTAAAA------T
AATTGATTGCCTACTATATTTTAAAAATAGAGTGTGATCGTGCGGAACCAGGTC-------TTATGACTCGCTTCGCACC
ACACGACTGTCCATGCAACACGTGTGTTCTACACACACGTGTAAGTGGATGGTACTTAAAATGAAATGAAATAAAAA---
-TATATTTGCAATTGTTGATAATGGG--------------ATATAATGCCCGGTTTTAAGTATACTTATTTCACA---TT
CAGTTTTGAAGGAGAAAGCTTGAGAAAGATCAATGAAAATCTCTCGTAAAGTAAGATATGCCTTACAATTCATGACAGAT
ATAAAAAAA-A-------TCTTGTAAAAATGGATGGGGAGAGTAAATGGTGATTATTGACGGTAAGGAAAATAAGATAAA
GATAAACATAACCTTATCTATA----------------------------------------------------------
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-------------ACACTCGTCATTGCTTGTTATTG--------------------------------------------
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------------------------------------ACTGTAATTGTAAAAGCTTGCACAATGTGAGGAAAGTGAATTGG
ATGGAATTTTT-T-ATCTATGTCTTAATAATGGGACATTATTAATGGCAGATTATGCATATTTTGATGTAAGAGTACTTT
ATTTGCTTATATACTTCGTATTTGTTATCAATGCACTCAATGCACATGTTTGAATTCGGATACTTGAGGAAGTATATA--
TAATATAAGAATACTTTAATATTACAAGATAACATTAAATACTCAA-------------------------TCTATATGG
GCACAATCCTTGAGATGCTACTTTGACCATTGTTTATGATTTATATAGTTGTTATAAGATACTTAAATTCAAGAGAAAAA
ATATGGAT----------------AGTG-------------TTTGCCTAGCATGTTAATTATTTGTCAAAGCTAGACAAG
ATTTGGTTATAGTTTACTGTGAAATCGTTCATTTTATAATGTAGATAGTGACACCATGTGTTGAC-TTTAAGAATAAACT
TTTAACTAGGGGGTATTCTTAGTAGTGTGGTT------------------------------------------------
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>chr5A_30
GGAGAGAGC----------------------------AGAGCAGGGGAA----GGCGGGGGCGGCGGCGGCGAAGCGGCG
GTGCTTATTATACGGATATGGAGATTGGGAGGGAGATTTGAGAGTGAATACTAG---GAAAGTGACGCCGTAAAATGGGG
ACGCTAACGGCGAGGGGAGGCTGCGTGCGCTGTCGAAACCCCGTTTCCTTCCTCCTTTCGGCCTCGCCTTGTGTAGGGTG
GATATCCATATAGGAGTACCTATAAAGGATGGATGATTATTAATCCAAGGAAATATGGAATGGATGTGGATGTAATCTTA
TCTGTAGCACTTAATGATATCCATCTTTT-CTCTCTTCTCTTTTGGTGATTATTAACAACCCCGGTTGTGAAATACTCCT
AATTAATTGTCTGCTATTAAAAACA---------TGAACGTGCGGAACCAGGTC-------TTACGACTCGCTTCGCACC
GCACGACTGTCCACGCAACGCGCGTGTTCTACACA--CGTGTACGTGGACGGTACTTAAAATGAAATGAAATAAAAAAAT
TG-TATTTGCAGTTGTTGATAATGGGTCATTATCGATGGCATATAATGTCGGGTTTTAAGTATACTTATTTCACTAAGTT
CAATTTTGAAGAAGAAAGCTTGGGAAAGATCAATGAAAATCTCTCATAAAGTAAGATATGCCTTACAATTCATGACGGTT
ATGAAAAAA-AACATAATACTTGTAAAAAGGGATGTGGAGTGTAAATGATGACTATTGGCGGTAAGGAGAATATGATAAA
CATAAACATAACCTCATCTATA----------------------------------------------------------
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-------------ACACTCGTTATTGCTTGTTACTG--------------------------------------------
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------------------------------------ACAATAATTGTAAAAGCTTGCATGATGTAAGGAAAGTGGATTGG
ATGGAATTTTT-TAATCTATGTCTTAATAACCGGACATTATTAATGGCAGATT-TGTAGATTTTGATGTATGGGTAATTT
ATTTGCTTATATA-------TTCGTTATCAATGCACTGGAATACTGGATACACG------TATTTGAGCAAGTATATACA
TAATATTAGGATACTTTAATATTACAAGACAACATTAAATACTTAGTCGGCGCCAAAATACATTATCTTTTTCTATATGG
GCACAATCTTTGAGATGCTACTTTGACTGTTGTTTAAAATGTATATACTAGTTAAATGATATTTAAATTCAAGAGAAAAA
ATATGAAT----------------AGTCTGATGGTACAATATTTTCCTAGCATGTTAATTATTTGTCAAAGTTAGAGAAG
ATTTAGTTTTAGTTTAATGTGAAATCATGCATTTTAGGATGTTGATAGTAACACTATCTGTT------------------
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>chr6B_783
TTG-----------------------------------------------------------------------------
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------------------------ATTTACCTGATTGGAAAAAACGTAAGTTCGGTTATATGAAGCTAAATGTGAACACG
AGTTTTGATTGTGATTCAC-TTGTGGGGACCGTGGGGGGCTGTTATCCGAGACCACAATGGGAAGTTCATTGCCACAGCA
AATGAAAAGATGGCGATTTGCTATGATTCATTTACAGTCGAAGCCGTGGCAGTGAGATT-GGCTTGAATCTTACACGTAA
TATGGGCTGTAGCAAAACTGAGATGAATTCGAATAGCGTGGAAGTT----------------------------------
--------GTTGAAGCTCTGAATGACTGTAGTTCATCATCAGTGGCCAGTACAATTTTTGATGACTGTTTT-TTTTATGT
CTCTTGATTTTAATCATGTAACCTTTGCTCAATGTAATAGGGAAAGTAACCAAGTAGCTCATGAAA--GCTAGGATAGCT
AGATTTTCACCTCCTTCTGCCTGGATGGATTCAGCACCGGACGCGGTGATTTCCATGCTTGTAAACGATGCAA------T
AGCGAGTGAATAAAG-AGGTGATTTTGGT---------------------------------------------------
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>chr6B_791
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-----------------------------CCTGCTTGGG-AAAACCAAAGTCCGATTATATGAAACTAAATGTGGATGCG
GGTTTTGACAGTGATTCAATTGAAGGGGCCAT---GGGGCTGTTATCTGTTACCACAGTGGGAAGTTCATTGCCGCAGCA
AATGAAAAAGTGGAGATTCGCTATTACTCGTTTACAACATAAGCATTGGCAGTGAGATTCAGCTTGAATATCGCACGAGC
TATGGGTTGTAGCAAGATCGAGATCAACTCGGATAGCATGGAAGTT----------------------------------
--------ATCGAAGCTTTGAGAGATGGTAATTCTTCATTGGTGGCCAGTCCAATATTTGATGACT-TTTT-TTTTATAT
CTCTTGACCTTAATCATGTGATCTATAATGATTGCAATAGAGAAAGTAATCAAGTAGCTCATGAACTGGCTAGGATAGCT
AGAGTTTCTCCTCCTTCTGTCTGGATGGATTCAACACTGTATGCGGTGGGTTCCATGCTTGTAAATGATGCAAAATTGCT
AGTGAGTGAATAAAGGAGGTGAATTTT-----------------------------------------------------
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-------------------------------------------------------------------TTCAACAAAAAAA
TTAAT---------------------------------------------------------------------------
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>chr6D_802
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----------------------------------------AAAACCGAAGTCTGATTATATGAAACTAAATGTGGATGCG
AGTTTTGACTGTGATTCAATTGAAGGGGGCGT---GGGGCTGTTATCTGTGACCACAATGGGAAGTTCATTGCGGCATCA
AATGAAAAAGTGGAGATTTGCTATGACTTGTTTACAACATAAGCATTGGCAGTGAGATTCGGCTTGAATATCGCACGAAC
TATGGGTTGTAGCAAGATTGAGATCAACTCAGATAGCATGGAAGTT----------------------------------
--------ATTGAAGCTTTGAGAGACGGTAATTCTTCATTGGTGGCAACTCCAATATTTGATGACTA--TTATTTTATGC
CTCTTGACCTTAATCATGTGATCCATGATCATTATAATAGAGAAAGTAATCAAGTAGCTCATGAACTGGCTAGGATAGCC
AGAGTTTCTCCTCCTTCTCTCTGGATGGATTCAACACTGGATGCGGTGGGTTCCATGCTTGCAAATGATGCAACATTGCT
AGCGAGTGAATAAAGGAGGTGAATTTT-----------------------------------------------------
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-------------------------------------------------------------------TTCAAAAAAAA--
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>chr6B_805
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-------------------------------------------ACCTAAGTTCGGTTATATGAAGTTGAATGTGGACGCG
GGTTTCAATTGTGATTCACTTTGTGGGGACCGT-GGGGGCTGTTATCCGAGACCACAATGGAAAGTTCATTGCTGCAACA
AATGAAAAGATGGAGATTTGCTATGATTCATTTACAGCAGAAGCCGTGGCAGTGAGATTTGGCTTGAAACTTGCACGTAC
TATGGGCGGTAGCAAAATTGAGATCAATTCAGATAGCGTGGAAGTTGTTAAAGCTATAAATAACGGTACTTCATCATCGG
TGGAAGTTGTTGAAGCTATGAATGACGGTAGTTCATCATCGGTGGCCAGTGCACTTTTTGATGACTG--TT-TTTTATGT
CTCATGATTTTAATCATGTAACCTATGCTCACTGTAATAGGGAAAGAAACCGAGTAGCGCATGCACTGGCTAGGATAGCT
AGATTTTTCTCTCCTTCTATCTGGATGGATTCAGCA----------TGATTTCCATGCTTGTAAACGATGCAACTTTGAT
AGCGAGTGAATAAAG-AGCTGATTTTTGTCAACAAAAAA-----------------------------------------
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>SNPs
--------------------------------S----------------SSSS-------------------------S-
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-----------------------------S----------------------------S--------------S------
------------------------S--S--SSS---------------------SSSSSSS-------------------
--------------------------------------------S---------------------------S-------
S---S---------------------S-------S---------------S-----------------------------
------------------------------------------S---------------------------S------S--
--------SS--------------------------------------------S------------------S-S----
--------------------SSSS--------------------------------------------------------
----------S----------------------------------S--------------------S-------------
------------S------------------------------S------------------------------------
------S---------------------------------S---------------------------------------
----------------------------------------------------S------S--------------------
----------S---------------------------------------------------------------------
--------------------S----------------------S------------------------------------
-----------------------------S--S----------------------S------------------------
-----------S--------------------------------------------------------------------
-------------------------------------S----------S----S--SS----------------------
----------------S---------------------------------------------------------------
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------S-SSSSSSSSSSSSSSSS--------------------------------------------------------
--------S---------------S---------------------------------------SS--------------
--S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_891
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-----------------------------------------------------------------------GTGGACGCG
GGTTTTGATTT---------------------------------------------------------------------
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>reverse_2112
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-------------------------------ACAAGTGCTTCCTCCTCACG-----------------------------
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