>input_sequence_84930
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----------------------------------------------------------------------ATGGGATGCA
ACCAACTCGTTATTAATTATGACAATCTTGAGGTCATTGACACTATGAAGACGGGTGGTCATTCTTTGGGGGCGGCGGCT
---GTTTTCGACGACTGTTATCATTCCATTTGCGATTTTACTATTTGTAGGTTTGAACATTGTAATAGGGAAGCAAATAA
AGTTGCTCATGAGCTCGCTAGGTTGGCTAGATTTTCTTTGACGTATGATTGGCTTGAGGAGCCTCCAATTGAACTTGTAC
CCTTTCTCATAAATGATATAACTGTTATTTCAAATGAATAA---------------------------------------
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>chr5D_1_TraesCS5D01G153300
TACGTGAGCTCAAAGTAGGTTTACCAGACAAAAT-GATAAGTCTAACATTCCCAGCTAACCAAGCAAAGCCGGTGGTTTC
TTAGTCACGGCCAGCTAAAACAAAAGTTTCATTAAAGAGCG------------------TCCTCAAGGAATATAAAATTT
TCATGGTGCTATTCCAGAGCTACCATCCATGCACGAATACCCTCGTTTAAAAGAATAATCCGTTGAACAAAGAAAAAGCA
CATTCATCTGTGGGTGCAAAACGGTTGTGAAACTATCAAAGAAAAATAAAAACACATCTGAGGATCCTTTATAGATGTTG
ATCTTTATCCAACTACCAGTCAATTCACCTAGAATCCTAGATAAAAGTTAAAATAGTCAATTCACCTAGAATCCTAGATA
AAAGTTAAAATAGTTAATCGAGATGGACCCACCTACATCAGACTAAATAAATATTGGCATTCCTTTTAAAGTTGAGGTCT
ACCCCCTCTTGTCCATGGAAGGACATGTGAACTCACCACTTGGGTGAGTGATGTGTGTGTTTGGTTAAGGCCGGGAC-GG
GGAAAGTCCCGGCCCAATCTACCCTGTTCCATGGGGTGGGGTGGGGTGGGGGGGGGGACTCCTCTGAAGCCGTTGAACGA
AACCCACTTCAAAGTTCAGGGGATTGATTCACAAGTATGAGATCAACCTAATTACTTCCTGGGAGGATTAGTTTCACTAG
GCTTTGTTCCATTCTAGGGGGTTTAAACCTATAGGGGATCCCATCCCTGGAGGGATTGGGTGAACCCCCTCCCGTCATTC
AAT-CCCACTAACCCTTCTCCCTCCATTCCCCT---------GCTACTAATATCCATTCGGTTAAACCTTCAGCCCATTG
AACAAACAGTACTACTGTGCTGCTTTGTCATATAAAGAACATCGTCATAAAACTTACTATTGTGTTGCTCTATTGTACAA
GGAACATCGTAGAAAACTTACTACGGCGGAAACTTTGGCTCTCAGATTCGGTCTTGCCCTTGCGCAAAGGATGGGATGCA
ACCAACTCGTTATTAATTATGACAATCTTGAGGTCATTGACACTATGAAGACGGGTGGTCATTCTTTGGGGGCGGCGGCT
---GTTTTCGACGACTGTTATCATTCCATTTGCGATTTTACTATTTGTAGGTTTGAACATTGTAATAGGGAAGCAAATAA
AGTTGCTCATGAGCTCGCTAGGTTGGCTAGATTTTCTTTGACGTATGATTGGCTTGAGGAGCCTCCAATTGAACTTGTAC
CCTTTCTCATAAATGATATAACTGTTATTTCAAATGAATAAAGTTGTGTGTATTATTTTTCAAAAAAAGGAACATCAGAA
AAAAATATGCTTTCAAGTACTGCTGTGTTGTTGTATTGCTGCAGAACTGAAAAGAAAGATCAGAAAACTTACAAGTTCAG
AACAATGGTTATATTATTGAATAGAAGAACACAACAATACAAGGACCAGCA--ACAACAGTCGCCAAGCATTGTTCGCAT
GCCAGCACTTAAAAACTTACAGG-------TTCCAACATATAACATCCATGTGCATCAATGAGATTACAGAATGATATGA
TTTAATATTAGATATCAAGTTCTAATAAAGCCATAGGGTAGTTCAGAATTCCAACGAGCATCTCTCGGGTGGCGAACATC
TCATCGAGGATGGCCACAACAGCCATGGCCAGTTGCAAAATATAGCACGGATGAGCCTTCGCCTCAGATGGCATGCACTA
GTCGACGAGGTTGACACGCTCGCGAAAGTCTGACGCTTCTTGGTCCCACCAATGTCGTGCCTCTGTCCCTGCCACCTTCG
TTGTGGCCACTGTCGCCTAGGGTTCGCGAGAGGAGAATGGGAGAGAGGAGCAACTCATTTTTTTCGGTGCAAGGGCAATG
GTTGATTCCACGCGGGGAGAGGCAGGGATTGATTCCCCAATGAAACCCAGCGCTTTTGGAAGGGACCGGCCGAGGTGTAA
CCCACGTTGGGTTTAACCAAAGAGAACCCGGCGCTTTTG-----------------------------------------
-----------------GAAGGGATAGGTCGGGGTGTGAACCCCCTGTGGGTTTAA------------------------
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--------------------------------------CCAAAGAGAGAGATACCAAGCTCACCTGCATTTCACCCCAGC
AGGGCAAAACCGCTGGGTTCGATCACCACATGACACATGTGATAATCAATCCAAACAATTCAAAAGAAGAAAAAACCGCT
GGGTTCGATCAGGTTTCAGCCCCGATCCGGATAGGGGTGGGTATAACCGAACATGGCCCTCGGGGATTTTGGTTTCCCTA
TATAG---------CCAAACATGGCCTAACCGGTGACCACTTTATTATATTTAAATTAT
>chr5A_1
TACGTGAGCTCCAAGTAGGTTTACCAGACAAAAACGATAAGTCTAACATTCCCGGCTAACCAAGCAAAGCCAGTGGTCTG
TTAGTCACGGCCAGCTAAAACAAAAGTTTCACTAAAGAGTGTTTCCACGTTGTAGAACCTCCTCAAGGAATATAAAATTT
TCATGATGCTGTTCTAGAGCTACCATCCATGCACGAATACCCTCGTTTAAAAGAATAATTCGCTGAACGAAGAAAAAACA
CATTCATTTGTGGGTGCAAAACGGTTGTGAAACTATCAAAGAAAAATAAAAACACAACTAGGGATCCTTTATAGATGTTG
ACCTTTGTCTAACTACCAGTC-------------------------------------AATTCACCTAGAATCCTAGATA
AAAGTTAAAATAGTTAATAGAGATGGACCCACCTACATCAGACTAAATAAATATTGACACTCCTTTTAAAGTTGAGGTCT
ACTCCCTCTTGTCCATGGAAGGACATGTGAACTCACCACTTGGGTGAGTGATGTGTGTGTTTGGTTGAGGCCGGGAC-GG
GGAA-GTCCCGGCCAAATCCACCCTGTTTCATGGGGT------GGGTGGGGGGGGGGACTCCTCTGAAGCCGTTGAATGA
AACCCACTTCAAAGTTCAGGGGATTGGTTCACAAGTATGAGATCAACCTAATTACTTTCTGGGAGGATTAGTTTCATTAG
ACTTTGTTCCGTTCTAGGGGGTTTAAACCTATAGGGGATCCCATCCCTGGAGGGATTGGGTGAACCCCCTCCTGTCATTC
AATCCCCACTAACCCTTCTCCCTCCATTCCCCT---------GCTACTAATATTCATTCGGTTAAACCTTCAGCCCATTG
AACAAACAATACTATTGTGCTGCTTTGTCATATAAAGAACATCGTTGTAAAACTTACTATTGTGCTGCTCTGTTGTACAA
GGAACATCATAGAAAACTTACTACGACGGAAACTTTGGCCCTCAGATTCGGTCTTGCCCTTGCGCAAAGGATGGGATGCA
ACGAACTCGTTATTAATTATGACAATCTTGAGGTCATTGACACTATGAAGACGGGTGGTCATTCCTCGGGGGCGGCGGCG
---GTTTTCGACGACTGTTATCATTCTATTCGCGATTTTACTATTTGTAGGTTTGAACATTATAATAGGGAAGCAAATAA
AGTTGCTCATGAGCTCGCTAGGTTGGCTAGATTTCCTTTGACGTATGATTTGCTTGAGGAGCCTCCAATTGAACTTGTAC
CCTTTCTCATAAATGATATAACTATTATTTCAAATGAATAAAGTTGTGTGTATTATTTTTCAAA-AAAGGAACATCAGAT
AAAA--ATGCTTTCAAGTACTGTTGTGTTGTTGTATTGCTGCAGAACTGAAAAGGAAGATCAGAAAACTTACAAGTTCAG
AACAATTGTTATATTATTGAATAGAAGAACACAACAGTACAAGGACCAGCA--GCAACAGTCGCCAAGCATTGTTCGCAT
GCCAATACTTAAAAACTTACAGGTTCCAACTTCCAACATATAACATCCATGTGCATCAATGATATTACAGAATGATATGA
TTTAATACTAGATATCAAGTACTAATTAAGCCATAGGGTATTTCAGAATTCCAACGAGCATCTCTCCGGTGGTGAACATC
TCATCGAGGATGGCCACAACAATCATAGCCAGTTGCAAAATATAGCACGGATGAGCCTTCGCCTCAGATGGCATGCACTA
GTCGACGAGGGTGACACACTCGCGAAAGTCTGACGCTTCTTGGTCCCACCAATGTCGTGCCTCTGTCCCTGCCACCTTCA
TTGTGGCCGCTGTCGCCTAGGGTTCGCGAGAGGAGAATGGGAGAGAGGCACAACTCAT-TTTTTCGGTGCAAGGGCAATG
GTTGATTCCACGCGGGGAGAGGCGGGGATTGATTCCCCAGTGAAACCCGA------------------------------
-------------------------------CGCTTTTG-----------------------------------------
-----------------AAAGGGATCGGTCGGGGTGTGAACCCC-TGTGGGTTTAACCAAGAAAAAAGTCCATTTTACTC
CCTTGAAGAAAATGGGTTGTTCGCATAACCCCTTGAACTTTTTTTTTTGTTCACTTAACCCCCTGATCTATCCAATACCG
TTCAGAAATAATCTTGGGCGGATTTTCTCGGGTGGTTTGCTGACGTGGACATTGTCAAAGTGGTTTGTTGACCAAAGGGG
CCTTGTGGTCAGGTGAAGAGCGCAGCCGGCGCTCAGTTCATGCCGATGGTGTTGTCGTTCTTCGTCCGCGCGGCTAGCGC
CTCGTCCTCATGTTGAAATCTTGTCCAAGAGATTCACCTCGCTCAGCTATACATTCCTGGAAAATGAATTTCTTCGGGTC
GCCGCAAATCACCGTCACCCATGTCTTCTTCCTTGCCTCAGGCATTGACCACTGCCACCTCGATCTCTTCGTCCGGTGAC
CCCCGATTCTCCTCCTCTTCTTCCCGAGCACCATCGCGCTCCCCTGAAGCTAATCATCCCCTCCATCTGGAGCAGCGCGT
CCCCAAGGACCTCTTCCCGCATGGCCAAGCTCTGGCGCCTACTGTAGTTATTTGTCCGCGCGGCCAGTGCCTCCTCCTCG
ATGTGAAACCTTGTCTGAGAGCTTCACCTTGATCCAGTGCACATTCTTGCCAAAGGAATTAGTTTGAATCGTTGTAAATC
GCCCTTGCCATGTCTTCTTCCCCGTCCCCGACATCGAGCGCCGCCTCATTGATCTCATCCTCCAGTGACCCCTGATTCTC
CTCTTCTGGTTCCCATTCACCATGGCGCTCCCCTAAAGCTGACAGGCTAGTCCATTTGGAGCCACACGCCCCCGAGGACC
TCTCCCTGCGTGTCCATGCTCCGTCGCCCGCTGCTGCAGTCGAACACGACAACCAGTGCACTGGCATGCTCCGATGCCCC
ACCGTCTCTGCCGTCCAGCCATCTCCCCATCCCCCTTGGCCTCTGCTGATGCGGCCATGCCCATCATCTGCCGACGCCGC
CGACCGTCCTGCCCGATCCCGCTGTGGCCCCTGTTGTTCCCAGACATCATGAACCGGATGGGAGGACGCGTCGCATCATA
GGGGTCACTCGGATGGTCGTAGCTCCGCCGGGGGTGGCCTGTGCCACCGAGACGAGTGCCCGAGCTCCTCTCTGTCCCGC
GGGCGAGCGACGGATGAAGGAGATAGACCTGCCAGGTGGGCCTGCCTCCTCTAGGCCCCACCCGTCAATCTCAGCTGCAC
CTGACAAGGGAGGCCCACCCGCAGGTCAAAACCACCATTGACCAATGCCACATCAGCAGCAAGTGGTGACAAACCACCGA
GGGGGGTCTTTCGTCCAGTGTGGGTTTGTTTAGGGGGTGAAAGGAACAAAAAAATAGATGAGGGGGTAATGTGAACCACC
AACTTTATTCAGGGTAGTAAAATGGACTTTTTCTTTAACCAAAGAGAGAGATACCAAGCTCACCTCGATTTCACCCCAGG
CAGTGC-----------------------------------------------------------------AAAACCGCT
GGGTTCGATCAGGTTTCAGCCCCGATCCGGATAGGGGTGGGTATAACCAAACATGGCCCTCGGGGGCTTTGGTTTCTCTA
TATACTATATATAACCAAACATGGCCTAACCGGTGACCACTTTATTATATTCATAAATT
>chr5B_374
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------------------------------------------------------------------------CCTAGATA
AAAGTTAAAATAGTGAATAGAGATGGACCCACGTACATCAGACTAAATAAATATTGACATTCCTTTTAAAGTTGAGGTCA
ACCCCCTCTTGTTCAAGGAAGCACATGTGAACTCACCACTTGGGTGAGTGATGTGTGTGTTTGGTTGAGGCTGGGACGGG
GAAA-GTCCCAGCCCAATCCACCTTGTTCCATGGGGGAGAAAAAAA-----------ACTCCTTTGAAGCCATTGAATGA
AACCCACTCCAAAGTTGATGGGATTGGGTGACAAGTATGAGATCAACATAATTACTTCTTTGGTGGATTAGTTTCACTAG
GCTTTGTTCGTTTCTAGGGGGTTTAAACCTATAAGGAATCCCATCCCTGGAAGGATTGGGGGAACCTCATCCCGTCATTC
AATCCCCACTAACCCTCCTCCCTCCATTCCCCTGTGAACCCTGCTACTAACATCCATTCGGTTAAACCTTCAACCCACTG
AACAAATAG---------------------------------------------TACTATTGTGCTGCTCTGTTGTATAA
GGAACATCAGGGAAAACTTACTACAACGGAAACTTTGGCGCTCAGATTTAGTCTTGCCCTTGCGCAAAGGGTGGGGTGCA
ACCCACTCGTTATTAGTTATGACAATTTCGAGGTCATTGACACTATGAAGACGGGTGGTCATTCTTCGGGGGCGGCGGCG
ACGGTTTTCGACAATTGTGATCATTCCATTTACGATTTTACTATTTTTAGGTTTGAACATTACAATAGGAAAGCAAATAA
ATTTGCTCATGAGCTCGCTAGGTTGGCTAGATTTTCTTTGATGTATAATTGGCTTGAGGAGCCTCTGATTGAACTTGTAT
GCTTTCTCATAAATGATGTAATTGTTATTTCAAATAAATAAAGTTGTGTTTATTTTTT-------AAAGGAACATCAGAG
AAAA--ACGCTTTCAAGTATTGTTGTGTTGTTGTATTGTTGTAGAACTGAAAAAGAATATCAGAAAACTTA---------
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>chr5B_1395
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-------------------------------------------------------------------CTTACAAGTTCAA
AACAATGGTTATA-TATTGAATAGAAGAACACAACAATACAAGGACCAACACAACAACGGTCGCCAAGTATTGTTCGCAT
GTCAATACTTAAAAACTTACAGG-------TTCCAACATATCACATCCATGTGCATCAATGAGATTGCAGTGTGATATGA
TTTAATATTAGATATCAAGTTCTAATTAAACCATAGGGCAGTTCAGAATTCCAACGAGCATCTCTAGGGTGGCGAACATC
TCATCAAGGATGGCCACAACAGCCATGGTCAGTTGCAAAATATAGCATGGATGAGCCTTCGCCTCAGATGGTATGCACTA
GTCGACGAGGGTGAGACGCTCGTGGAAGTCTGACGCTTCTTGGACCCGCCAATGTCGTGACTCCATCCCTGCCACCTTCG
TTGTGGCTGTTGTCGCTTAGGGTTCGCGAGAGGAGAATGGGAGAGAGGAGCTGCTCTTCTTTTCAGCGCAAAGGGCAATG
GTTGATTCCACGTGAGGAGATGTGGGGATTGATTCCCCACTGAAACCCGA------------------------------
-------------------------------CGCTTTTGGAAGGGATCGGCCGGGGTGTAACCCCGATGAGTTTTACCAG
AGAGCTCGGCCCTTGTGGAAGGGATCGGTCGGGGTGTAACCCCC-TATGGGTTTAACCA---------------------
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-----------------------------------------AAGAGAGTTATACACCCA----CTGGATTTAACACCAGC
CAAGGC-----------------------------------------------------------------AAAACTGCT
AGGTTCGATCAGGTTTCAGCCCCGGCCCCGATAGGGGTGGGTATAACCGAACATGGCCCTCGGAGATTTT----------
-----------------------------------------------------------
>SNPs
-----------S---------------------S-------------------S-----------------S-----S-S
-------------------------------S-------S----------------------------------------
-----S----S---S--------------------------------------------S--S-----S--------S--
-------S------------------------------------------------S--SS-------------------
-S----S--S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
------------------S-------------------------------------S-----------------------
------------------------------------------------------------------S-------------
----S--------------S-----------------S-SSSS----------------------------------S--
--------------------------S-----------------------------------------------------
----------S---------------------------------------------------------------------
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--------------S------------------------------SS-----------------S------S--------
--------S----------------S-------------S----------------------------------------
------------------------------------------------------------------S------------S
-------------------------------------------------------------S------------------
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----------------------------------------------------------------S--------------S
----SS----------------S-------------------------------S-------------------------
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----SS--------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
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----------S---------------------------------------------------------------------
--------S-------------------------------------------------S---------------------
-----------------------S---------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
-------------------------S------------------S-----------------------------------
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------------------------------------------------------------------S-------------
SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
----------------------------------------------------------------------------S---
----S----------------------------------------------S-S-SSS-
>forward_80
------------------------------------------------------------CAAGCAAAGCCGGTGGTTTC
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>reverse_1960
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---------------------------------------ATGAAACCCAGCGCTTTTGG---------------------
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