>input_sequence_84925
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-------------------------------------------------------------------ATGGTGGCCAAGA
ACGAGATGTGGGCAGCTAAAGAGGCAGCAGCGAGGGCACGGGCAGTCGACGAGTCGAAGAAGTACAAGAGATCGCTTGTG
GAGATCGGTGTGATGCTGTCGATCAGCGCCATCTGCATCCTCTCGAGCTTCCTTGTGCCGGGGATTTCCTGGCAGCAGCA
GATCATGTGCTGGCAGAACGCGATGATCGCCTTTGCCTCCGCCGCGATGTTCACCTGGATGCACCTGAGGAACTTTCGCT
GGAACGTCCACAAGATCGAGTCGCCTCTAGTTTAA---------------------------------------------
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>chr5B_1_TraesCS5B01G357800
ACTACGCCACAGCTCTAGCGCGACCACTTTTCTCTCTGAGACTAAAAAAGAAGCTATAGTGCGACCACCTCGGCCCCTCG
GCGCCTTCATCGCCGACCTCCGGCGGCCTCCACTCCCAGATTCGCCACGCCACCGCCGCCTACCGCCGCGCCTCCACCTC
GGCAAGCAGCAACACCAAGGTACCATCTCCCCTCTCTCTC--CTCTT---------------------------------
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-----------------------TTGCTCCGGACACAAGG------GCCAAAAATTTCAGCCCTTGAACCCCCAAATCGA
CTAGGG--TTTTGGACATTCGGGGCGTCCTGCCGCCCCCGTTCCCGCTTGATTCGGCCAGCCGCCGCCCAGTTTCTGGCC
GACGGCGAGGGATCTCTGCCCCCCTCAACCACCTTGCGCCATCT------------------------CTGCCCCCGTCC
GCCTGAAGATATGCTGCATTGCTGCCGTTCCTTCTCGTCCTCCTGTCCTCTGCTTTGCTGCTGCTCCTCTGGTTTGCTGT
TACTGCTTTGCTATGACGGTGGTGATGCTGCTGCTGCCAAGTTGCTCCTCTGCCATGCTGTTACTGCTTACTGTGCTGTG
CTGTGCTGCTGCTGCTCCTCTGCTAGCGCCTTGCAATATTGTTGTGTACCAAAATGTCTTAAATGTA------CATGT--
----CTACTGCTCAAAAAAGAAAAGAAAAAACAGACGTACAGAGAGCAGTAAAA-T------------------------
-----------------------GCAGGTTGAATTGCTGGGAGCCTAGGATATG--------------------------
---------------------------------------------------------CATCAAAATATAGCTATGTTTGG
GCGTTGTCCCTAGTTAACGCACCGATTAATTCTCCAGAGCTTAATTCATTCAATTATCCGACGAAAACCCCAAATTTCTT
CGGTTCTAC---TTCAATGCGATATTTCCATTTCTGAGGCAATCAGTTCTGATAGTACATTGCTGAGACCTGTGGTGATG
TTGATTGTGAAAGACTTGTTTATTTCTCAGAACCTTGGGATATTACTTTGCGCGATTGACGT--TCTCTCCTTGTCTTAT
CTTGGTACAGG---------------------------------------------------------------------
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----------------------------------------TGCTCTGAGGCAGGGAGTACCTTCTAGATGGTGGCCAAGA
ACGAGATGTGGGCAGCTAAAGAGGCAGCAGCGAGGGCACGGGCAGTCGACGAGTCGAAGAAGTACAAGAGATCGCTTGTG
GAGATCGGTGTGATGCTGTCGATCAGCGCCATCTGCATCCTCTCGAGCTTCCTTGTGCCGGGGATTTCCTGGCAGCAGCA
GATCATGTGCTGGCAGAACGCGATGATCGCCTTTGCCTCCGCCGCGATGTTCACCTGGATGCACCTGAGGAACTTTCGCT
GGAACGTCCACAAGATCGAGTCGCCTCTAGTTTAAAGGGGGGGGA-------GGGACCATCGGTGGAGGAGAATATGTAG
CCTGCTGGCCTTGAATATCTAATTATGTAGGGAGGTGTGTAATGATCATGGATTCAGAAATTTTATCCCTAGTTGCTCTA
AGCCTTCAACTTTTGTAGTTTGTTAGATGAGGATTATCCGGGTTTAAGATGGTCTATGGTAATGTGGCTGCCCAGGTATG
ATTGCGTTGCTGTTTGAGGTCTCAATCCATAACAACACTTGGGAGTTGGAGCATACTATGCTCTGTTATGTTATG-CCAT
GAATATTGTGATTAGCTTGGTATGATGGATCAGTGCATGGTTGTGAAATTGCTTCCATGCAAACTCACTCTCATTATTAT
GGGCGTGAAATTGACTTATTTGAAATACTAGCAGGTACATATGTGTATGAATCTTTAGTCTATTTACTGTACAAGCTTAA
GT-----CTATTGCAGAAAACCTATAAAAGAGCTATTTTCGCCAACA----CTTTGGCAAACACAAGCACATCTCTTCTA
CACGTACTGTCGAAAAAATAATCTCAGACTTTGCACAGCACTTGGGCAAACTAAAACACTGCAGTATGCATTGAAATGTA
TAGTTCAGGAAACAGAATATATAGCTCCCTTACAGACCAGAGTATTTCCTTGGCCAATCTGCTTAAC---ACCCATTACA
TGCTTCCTGTGAATTTCCTTAAACAGCCTCAAATTCTACCAGTGAAAACAAGATTCTAGCATGACCAGATAATGCGTGTT
CTATCAATTTGCGCTGTCGATACTTTG-----------------------------------------------------
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-----------GAATAAAAACAAAAGCAATGATGCATGATGCTAATATTTT--T-CTTCTTCTTCTAACTTGTTAGTTCC
ACTTGCAGTACGTTCAAGCGTTGTCACATAATTTCACTGGATCAGAATGCAGTTATGAAACCTCTTGCACACGCACTGTC
AAAGAAGAAATAATCCCAGATATTGCACAGCACTTAGGCAAACTAAAACATTGCAGTACACACTGAAATGTCTAGCACAT
GA
>chr5A_28
---------------------------TTTTCTCTCCGGGAGTAAAAAAGCAGCTCTAGCGCGACCACCTCGGCCCCTCG
GCGCCTTCATCGCCGACCTCCGGCGGCCTCCCTTCCCAGATTCGCCACGCCACCGCCGCCTACCTCCGCGCCTCCACCTC
GGAAAGCAGCAACATCAAGGTACCATCTCCCCTCTCGCTCCTCTCTT---------------------------------
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-----------------------TTGCTCCGGACACAAGGCATACGGCCAAAAATTTCAGCCCTTGAACCCCCAAATAGA
CTAGGGTTTTTTGGACATTCGGGGCGTCCTGCCGCCCCCGTTCCCGCTTGATTCGGCCGGCCGCCGCCCAGTGTCTGGCC
GACGGCGAGGCATCTCGGGCCCCCTCAACCACCGCGCGCCATCTCCAGGCGCTAGAGCCCGCCTTCCCCTGCCCCCGTCC
GCCGGAAGATGTGCTGCATTGCTGCCGTTCCTTCCCCTCCTCCTGTCCTCTGCTTTGCTGCTGCTCCTTTGGTTTGCTCT
TACTGCTTTGCTATGATGGTGGTGATGCTGCTGCCGGCAGGTTGCTCCTCTCCCATGTTGTTGCTGCTTGCAATGCTTTG
TTG---TGCTGCTGCTCCTCTGCTAA-----------------------CAAAATGTCTTAAATGTAAATTTACATGT--
----CTACTGCTGCAAATCCGTCAGATGT--------TACAGAGAGCAGTAAAAAT------------------------
-----------------------GCAGGTTGAACTGCTGGGAGCCTAGGATATA--------------------------
-------------------------------------------------------TACATCAAAATATAGCTATATGTGG
GTGTTGCCCCTAGTTAACTCACCGATTAATTCTCGAGAGATTAATTTATTCAATTAGCCGACCAAAACCCCAAACTTCTT
CGGTTCTT---TTTCGGTGCGTTATTTCCTTTTCTG------TCAGTTCTGATCATACATTGATGAGACCCGTGGTGATG
TAGATTATGAAAGACTTGTTTATTTCTCAGAACCTTGAGATATTACTTTGTGCGATTGACTTGGTCTCTCCTTCTCTTAT
CTTGGTACAGGCAGGGCCGGCCCTGGAGTTTTGAGGGCCCCAGGGCGGACGCCATGAGTGGGCCCAGGGGCTGTGATGGA
GGAAAAAAATAAATTCTATAGTTTGATATTTTTCTGAGGGAGTTTTATAGTTTGATATGCAAAATTCTTGCAAAGCCATA
AACTATGATATATTTTTCCGTTGTAAATAGTACTCCGTCCAAATTACTTGTCTTTGGATTATGGATGTATCTAGACACGT
TGACTAAGTACATTCGTATATACACAACGTGTCTAGGTACATCCGTAGCTAGACAAATCTAAAACAAGTAATTTGAAACG
GAGGTTGTGTCTGATAATAATAGGTTGTGGTGCTTCAATAATATTGACATCTAATTGCTTTAGATTGTCAATCCAAAAAA
TAAATTTATTCATAACCTCCTTCGAAAATTTAGTTAACTGATGTGCTCATTTTCTCATTTTTGTTTTCTCGGAACTAGAT
AAATGTTTTTAGGCAACATGTTTATGAAAACAAAAAAGAGCACTCCTCAACTTTGGAGTAAATTAGCAGCAATAATGTGT
GCTCCAACGCTTGTGTATTCTGGAGCTATCCAAGTCCAAAACATTGAGACCAAGCGACCAAGACCACCTATCTCCTCCAA
GGCTGCAAGTGTTATAAAAACAATAATACAATTTAATTATCATCAACCAGATTAAAATTGTGGGCTAAAAGAATTCATAA
TTTTTTACCTCTGTCGTTAGGCTGTTCCTGGCCCTAGCGCAGCCGGCAGCCGTTGCAACGCTCCGGCATGCGGCAGAGTT
GCATGGCGTTCGCCCGCTCCGTCCTTCGTGTGTGACAGGAAAACGAAGCCATGGGCCTCGAGCGAGTGAAGATTTGCTAG
ATTGGGTTTGGAGAATTGAAGAAGAAATCAAAGTAACTGCCATGGAAAGGTCATTCCCTCAAACAAAAACAAAAAAACCA
ACAGCCACGGCTCCACACAAACAGGTACACACACATACAGCAGATCCGCATTCTGGAACGAATTCAGCTTTTTTATGACT
TTTTTTTAGACTACAACGAATTCAGCTATGTATGCGTTCTTTGGGCTTCTAATCTACATATCACGGGTGGGCCTCTCAGG
CCTTTTCTGCTGTACCCAAGCCTTTCATACATGTATATGGCCAGGGTCGGGCCCCTAGTTTGGCTGGGCCCCAGGCCGTC
GCCCCTACTGCCCTGGCCCAAGGCCGGCCCTGGGTACAGGTGCTCTGAGGCGGGGAGTACCTTCGAGATGGTGGCCAAGA
ACGAGATGTGGGCAGCTAAAGACGCAGCAACGAGGGCACGGGCAGTAGACGAGTCGAAGAAGTACAAGAGGTCGCTTGTG
GAGATCGGTGTGATGCTGTCGATCAGCGCCATCCACATCCTCCTGAGCTTCCTCGTGCCGGGGATTTCCTGGCAGCACCA
GATCATGTGCTGGCAGAACGCGATGATCGCCTTCGCCTCCGCCGCGATGTTCACCTGGACGCACCTGAAGAACTTTCGCT
GGTCCGTCCACAAGACCGAGTTGCCTCTAGTTTAAGGGGGGAGGA-------GGGGCCATCGGTGGAGGAGAATACGTGG
CCTGCTGGCCTTGAATATCTAATTATGTAGGGAGGTGTGTAATGATCATGGATTCAGGAATTTTATCCCTAGTTGCTCTA
CGCCTTTGACTTTTGTACTTTGTTAGATGAGGATTATTTGGGTTTAAGTTGGTC----------------------TATG
AGTGCGTTGCTGTTTGAGGTCTCACTCGATAACAACACTTGGGAGTTGGAGCCTATTATGCTCTGTTATGTTATG-C-AT
GAATATTTTGATTAGCTTGGTATAATGGATGACTACATGGTCGTGAAATTGCTTCCATACAAACTCATTCTCATTATTAT
GGCCGTGAAATTGATTTATTTGAAATACTAGCAGGTGCATATGTGTTTGAATCTTTAGTCTATGTACTGTGCAAGCTTAA
GTTAAGTCTATTGCAGAAAACTTATAAAAGACCTATTTTCGCCAACATGCACTTTGGCAAACACAAGCATAGCTCCTCTA
CAAGTACCGTCG-AAAAATAATCTCAGACTGTGCACAACACTTGGGCACACTAAAACACTGCAGTATGCAGTGAAATGTA
TAGTTCGGGAAACAGAATATATAGCTCCCTTACAGTCCCACGTATTTCCTTGGCCAATCTGCTCATT---ACCCATTACA
TGCTTCCTGTGAATTTCCTTTAATAGCCTCAAGTTCTACCAGCAAAAACAAGATTCTAGCGTGACCAGATAACATGTGTT
CTATCAATTTGCGCTGTCGATAACATGTGTCCTATCAATTCTCTTGAAAGTATATTTTTCGTCCTCAACTTTCTTAAAGG
TATAGAAATAGTCCCTCAACTGTAAAACCAGCAAACCTTGGTCCTTCAACTTTCAAAACCGGATAAGTTTAGTCCCTCGT
ACCAGCTTGGATGGTTTCTTGCTGACGTGGAGTGGTTTTTGACTCGACTCGAGCTGACAAATGTGGGGACCACCACAACT
GCCCAGTTTTTTTTTACTTTGATTCCTGCTATTTATCTCTCTGACTTACCTGTGGACCCCATCTGTGAGAGCATCTCTTC
AACCTCCAAACCAGCAAGCGGTTCGTTTGTGAGCGCCGTCCGCTAGAGAAGGCGATGCCAATGCTCTGAAGCTGCACGAC
AACCAAACCTGCTCAGAAGGTAGCACACGGCAGGACGCACTTTGCCTGCGGCCCTGCGCTCTGCTCGGCCCGCCACGCAC
CAGGTGGCCTTCATACCGGCGTCGTGTGTGTCGATGCCGCGTGCGTGCGTGATGTGTGCTTGTGTGTGTGCGTTAGGTTG
TGCTGCTGCTCTGTTCATGCATGTGTTGTGCTGGGTGTGCAATGACGATGAGCTGCTCGCCCGTGATAGCTGGGCGCGCG
TGGTGACGAGATCACGGAACCTATCAACTCACGGGTGGCTGCGGATGAAGTGCACGAGGTGCAAGAGAGGACGCGGATTA
GCACCGAACGTGGACGTTGTCGGGTAGCCACCGGCAGCGCCGAGGGAGCCGAGGCACCGCAAGGCCAGCAGGGTCGGGGC
GGAGCTATGATTGCGGCCTGCGGCAGCTTGGCCTCGGCATACACGCGAACTCGTCCACCGCAGGGTCGGGCCGAGGCGGA
GCTGAGCGTGCGGCCAGCAACGTGGATGCACACGCAGCAGCCTCCATCTTGATTCTGTGGGCGTCTGTGGGCGGCGCACC
GGGGGACGCGCGCCAGAGCGGCCTCACGGAGGACGCCAAGAACCAGGGCCACCTCGCCGGAGGAATCCACGCCCAAGTCC
TCCTCCTGATGCCCGACGCCTGTCAACTGCTTGACTAAATGCCCAGCTGAGTTGGAACAAGAAGGAAGAAAAAAGTTCAC
TAGGGATTACCACGTGGATGCAGAACCAGTCAAAACCACCTCAAGGGGTACGAGGGACTAAGTTTATTCGGTTTGAGGAG
TTCAGGGACTAAGATTTGCTGGTTTTGAAATTGAGGGAACATTTCTATACTTTCAAGAGAATTCAAGGAAGAAAAATATA
CTTATCCCTTCAAAGAAAAATGAAAGCGATGATGCATGATGCTTCTATTTT--TTTTTCTTCTTCTAACTTGTTGGTTCC
ACTTGCAGTACGTTCAAGCGTTGTGGTATAATTTCACTGGATC---------------------TTGTACATGCACTGTC
AAAGAAGAAATGATCCCAGATTTTGCACAGCACTTCGGCAAACTAAAACATTGCAGTACACACTGAAATGTCTAGCACAT
GA
>chr5D_44
AAAAAAAAAA-------------------------------------------CTTTAGCGCGACCACCTGGGCTCCTCG
GCGCCTTCATCGCAGACCTCCGGCGGCCTCCACTCCCAGATTCGCCACGCCACGGCCGCCTACCTCCGCGCCTCCACCTC
GCCAAGCACCAACGTCAAGGTACCATCTCCCCTCTCGCTCCTCTTTTGGGGCCTGTTTGGATGGAGGCCATACATGCATA
TTTTTTCTCAGGCAGCGATCTCAGCCTCAGGCTTAGGAAATCCAACGCGTGAGATTCCTGCCTGAGTCAGGCAGCTTTCT
CTGGAAGGAAACCAAACGGGCCCTTGCTCCGGACACAAGGCATACGGCCAAAAATTTCAGCCCTTGAACCCCCAAATAGA
CTAGGGTTTTTTGGACATTCGGG-CGTCCTGCCGCCCCCGTTCCCGCTTGATTCGGCCGGCCGCCGCCCAGTGTTTGGCC
GACGGCGAGGCATCTCGGGCCCCCTCAACCACCGCGCGCCATCTCCAGGCGCTAGAGCCCGCCTTCCCCTGCCCCCGTCC
GCCGGAAGATATGCTGCATTGCTGCCGTTCCTTCCCCTCCTCCTGTCCTCTGCTTTGCTGCTGCTCCTCTGCTTTGCTGT
TACTG-TTTGCTATGATGCTGCCGCCGCTGCTGCTGCCAAGTTGCTCCTCTGCCATGCTGTTGCTG---------CTTTG
CTG---TGCTGCTGCTCCTCTGCTTGCGCCTTGCGATATTGTTGTGTACCAAAATGTCTTAAATGTAAAATGTACTACTA
CATGCTACCGCTGCAAGTGCGCATGGCCT--------CAAAGAGTGCATCACGTTTGGGGATGGGAATTTGCAGTCTTTG
TTGATCCATCAGATTGACAGAGAGCAAGTTGAATTGCTGGGAGCCTAGGATATACTCCGTCTGTAAATTAATATAAGAGC
ATTTAGATCACTACTTTAGTGATCTAAATGCTTTTATATTAGTTTACAGAGGGAGTACATCAAAATATAGCTATATGTGG
GCGT---------TTAACCTACCGATTAATTCTCGAGAGATCAATTCAGTCAATTGGCCGACCAAAACCCCAAACTTGTT
CAGTTCTAGTATTTCAGTGCGATATTTCCATTTCTGAGGTCATCAGTTCTGATCGTACATTGCTGAGACCTGTGGTGATG
TAGATTGTAAAAGACTTG-TTATTCCTCAGAATCTTGAGATATTACATCGTGCGATTGACTTGGTCTCTGCCTGTCTTAT
CTTG----------------------------------------------------------------------------
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-----------------------------------------GCTCTGAGGCGGGGAGTACGTTCGAGATGGTGGCCAAGA
ACGAGATGTGGGCAGCTAAAGACGCAGCAACGAGGGCACGGGCAGTTGACGAGTCGAAGAAGTACAAGAGGTCGCTTGTG
GAGATCGGTGTGATGCTGTCGATCAGCGCCATCTACATCCTCCTGAGCTTCCTCGTGCCGGGGATGTCCTGGCAGCACCA
GATCATGTGCTGGCAGAACGCGATGATGGCCTTCGCTTTCACCATGATGTTCACCTGGATGCACCTGAGGACCTTTCGCT
GGTCCATCCACAAGACTGAGTTGCCTCTGGTTTAAAGGGGGCGGGGGAGGAGGGTGCCATGGGTGGAGGAGAATATGTAG
CCTGATGGCCTGGAATATCTAATTATGTAAGGAGGTGTGCCATGATCATGGATTCAGGAATTTTATCCCTAGTTGCTCTA
AGCCTTTGACTTCTGTACTTTGTTAGATGAGGATTACTTGGGTTTAATATGATCTTTGGTAATGTGGCTGCCCAGGTATG
AGTGCATTGCTGTTCGAGGTCTCAATCGGTAACAACACACGGGAGTTAATGCCTATTATGCTCTGTTATGTTATGCC-AT
GAATATTGTGATTAGCTTGGTATAATGGATCAGTACATGGTTGTGAAATTGCTTCCATGCAAACTCACTCCCATTATTAT
GGCCGTGAAATTGACTTATTTGAAATACTAGCAGGTACATATGTGTCTGAATCTTTAGTCTATGTACTGTGCAAGCTTAA
GTTAAGTCTATTGTAGAGAACTTATAAAAGAGCTATTTTCGCCAA----CACTTTGGCAAACACAAGCATAGCTCTTCTA
CAAGTACCATCTCTCAGG----------CTTTGCATAGCACTTGGGTAAACTAAAACACTGCAGTATGC-----------
-AGTTCGGGAAACAGAATATATAGCTCCCTTACAGACCAAAATATTTCCTTGGCCAATCTGCTCATCACCACCCATTACA
TGCTTCCTGTGAATTTCCTTTAACAACCTCAAGTTCTACCAGCGAAAACAAGACTCTAGCGTAACCAGATAACCTGTGTT
CTATCAATTTGTGCTGTCAATACTTTG-----------------------------------------------------
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-----------AAAGAAAAATGAAAGCAATGGTGCATGACGCTTCCATTTTTCTTCTTCTTCTTCAAACTTGTTAGTTAC
ACTTGCAGTATGTTCAAGCGTTGCGACATAATTTCACTGGATCAGAGTGCAGTTATGAAACCTCTTGTACATGCACTGTC
AAAGAAGAAATGATCCCAGATTTTGCACACCACTTTGGCAAACTAAAACATTGCAGTACACACTGAAATGTCTAGCGCAT
GA
>SNPs
-SS-SSSS-SSSSSSSSSSSSSSSSSS---------S-S--S--------S----S---S--------------------
----------------------------------------------------------------S---------------
--------------S---------------------S-------------------------------------------
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-----------------------------------------------------------------------------S--
----------------------------------------------------------S-------------S-------
----------S-----S-S--------------SS---------------------------------------------
---S------------------------------S-S-------------------------------------------
----------------S---------------------------------------------S------S-SS----S--
---SSS----------------------------S---------------------------------------------
------------SS---SSSSS----SSSSSSSSSSS-------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------S-S---
------S-----------S---------------S----S----------------S-----S-----------S-----
--------S-------S----------------------SS------------S--------------------------
-S-----------------------------------S------------S---------S-------------------
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---------------------------------------------------S------------S---------------
----------------------S------S----------------S-----------------------S---------
----------------------------------S-------SS---------S-----------------------S--
---------------------------------S----------------------------------------------
--SS-----------S-----S-------------------S-------------S------------------------
---------------------------------------------------------S----------------------
------SS---------S-------------------SS----------------S------------------------
-S-------------------------S------------------------S--S---------------------S--
-----------------------S----------S---------------------------------------------
--S-------------------------------------------S----------------S------S---------
---------------------S-----------------------------------------------S-S--------
--S----S----S---------------------------------------------------------S---------
------S--------------------------------S-----------------------S-S--------------
--------------------S-----------S---------S-----------------S-----------SSS-----
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-----------S--S-----SS---------------------SS-----------------------------------
------------------------S---------------------S--------------------S---S--------
-----------S---------S-------------S--------------------------------------------
--
>forward_703
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-------------------------------------------GCTCCTCTGCCATGCTGTTA-----------------
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>reverse_3042
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-TTGCGTTGCTGTTTGAGGTC-----------------------------------------------------------
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--
