>input_sequence_84907
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------------------------ATGGAGCCGGTGGAGTCGGCCAAGTGCGAGTGCTGCGAGCTGCGGGAGGACTGCAC
CCGGGGGTACATCGTGGGCGTGAAGGCCGACTTCGGCGGGCGGTGGCTGTGCGGGCTCTGCTCCGAGGCGGTGAGGGTGG
AGGGCAGGAAGCGCGGGATGGAGGCGGCGCTGCAGGACCACATGGCCTTCTGCGCCGGCTGGTGCCGCGGCAAGGACCCC
GCGCTCCGGGTCGCCGACGGCATGCGCCAGATGCTGCTCCGCCGCCGCCGGCCCATCTCCATCTCCAAGTGA--------
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>chr4B_1_TraesCS4B01G276400
TACATACATACACTTGAGTTGAGACTACCTGATGCAAAGCAGTGGCACTTGTGCAGCTATTAGGTCACGCATAAGTGCGC
TGTCCAAGCAGGATCCCCGGTGCTAATTGTGTGCAACTCCTGGCACGGATGGTAGGGCCCTGCCTGCCTGCATTAGTGTC
AC----AAGGATGCAGGTGAGTTCATGCAGGTTCAGGTCAAGATGCCCCTACACT-------------------------
-GAACTGATGATCAGTTAACAAGGTGTGG----------GTGTTGTTAACTCATCGTGGAAGATGACGGGCGGGCCATGC
GACGGAATCGACCGCGGAACGACCGATCCGACAAGGCCAGTTGTGCCGTACCATGAGCAGCGACTGAAATCTAGCAGAAA
GGATGAGCAGAATTTCGCAGGGTGGTCCTAGATCCATGGACAGCGAGCAAGTTGTTGCGTAAGGTGTCTGTTCAAGCTTT
ATGGA-GCACGCAGGGAACAAGAATCGCGGAGATCGATCTCCCTGATGATCCTGTCTCTTCCTCCTCA-TTTTGCGGTCA
AGAGGTTCTCGTACAATATTT---ACC---AAAAAAAGCATTGAGGGTAAAAGTTTATCGTAGCAAGTAAAGTAAACAAT
CAGAAACTTTTACCGAGGTGTTTGTTGGTCAGGAGATGAAAAATGTCAGTGTACTGTTCATTAGGAGCTATAC-------
--ATCCCAGAGACAGAGAGAGCACATTATGCTGCA---TGCTGCACACTGTGAGGCTGCAGGAATTTTCCCATAAGTGAG
CTGATTAGCAATGCTGCTCAGATGCCAAATCAAGACAAATTAGGCCAATGGCACAGTGCCACAGAGAAGTAGGCCTCTCT
AATTAAGCATGCAGCTCCGAGCCAAGCCCCCCGG----CCATAAATACACACGGAGCGCGCGTGCGTCCTCGGTGTCACA
CTTGCTCTCTGCCTTGCTCCCACACCACCACCACCATTGCACGCTGGCCTTGAGCTCGGTCGATCGAACTATCCTTCACT
TGCAGTGGAGCTCGCGGTTGAGCGATGGAGCCGGTGGAGTCGGCCAAGTGCGAGTGCTGCGAGCTGCGGGAGGACTGCAC
CCGGGGGTACATCGTGGGCGTGAAGGCCGACTTCGGCGGGCGGTGGCTGTGCGGGCTCTGCTCCGAGGCGGTGAGGGTGG
AGGGCAGGAAGCGCGGGATGGAGGCGGCGCTGCAGGACCACATGGCCTTCTGCGCCGGCTGGTGCCGCGGCAAGGACCCC
GCGCTCCGGGTCGCCGACGGCATGCGCCAGATGCTGCTCCGCCGCCGCCGGCCCATCTCCATCTCCAAGTGAAGCCAAGC
GAAGCGACCCACCATTCATGGCGCGCGATGGA------------TGCACCGCGCCGGCGACGAATGGGTCCAGCCTGGCC
GGCGGTGACGACAAGC---------GCCGTTGCA-----------------------------AACAAGATCGATGTAAT
AATTAGCCAAGGGTTCATATGTACGC-----AGTAGTAATACGGAGCAT---GTATGTATGTAATG---------T----
--GTAGTAATAATCTTAGCTAGTAG-----CTAGGTTGAAGCTGCATTGCATCGTTGGCAGGTAGCTGATGCTAGTGCTA
GCTTTGCTCAAGCC----CCGGCTGTACAAA----AGGGGCCCAATAACATGAGAGTGTTAGGAATTAATTAGTAGATTA
ATTAGCACAT-GCTAATTAATGAATAATCATTAGAAAAAGGATGTGTCCAACCCCGAACAGTCATGTCCCTTC-TCTCTT
TCTATTGCCAATAGGCACCTGTTCTGGAGGGATGCCTTCGAACAGACACCTCTTTTTCCCACCTCTTCCAGATGTATATA
TACTTGAGAATCAATGGAAACCAGGACTGATTGTCCTTTCGCTTTCAATCTCGTTTTACTCTAACACGTTATCAGCCACG
TTGCTCTCCTTCGAGCGAATGGGCGCCAAAGAAAACCGCTCGTCGCCGGCGCAGCCTAGGTTTCGTCCTCTCCGTTCGCG
ACCTCGTCGTCGGCGAGGGGTCCTCAAGGCGTCCCGCGCCACGAGTGCAGAGGAGACATCGGCCCCGACGCACTCCTCTC
GAGACGGCACCGCGCCCGCCTGCGCCATGGCTAGCAGCGCCAGGCCGTGGCCGCCCTCGCGCGCGCCCGCCCTGCGCTAG
GGCTCGCCCGGCCCCCGGCCGGCCGTGG----------CCGCGCCAAGCCGTGGCCGGGACCGCCCGTCCGATCCCGCGC
CAGGCTGTGGCCGGTCTCGCAAGGCCGTGGCTGCGCTCGCCCTAGCCCGCCCGCGCCATGCTATGGTCGTGCTCCCGCGC
GCCGCCCAGCGCCCGGGCGCGCTCGCGCCGCCGCCGCGTTACTGGGCCCC
>chr4D_1
TACATGCATACACTTGAGTTCAGACTACCTGATGCAT-GCAGTGGCACTTGTGCAGCTATTAGGTCACGCATAAGTGCGC
TGTCCAAGCAGGATCCCCGGTGCTAATTGTGTGCAACTCCTGGCACGGATGGTAGGGCCCTGCCTGCCTGCATTAGTGTC
AC----GAGGATGCAGGTGAGTTCATGCAGGTTCAAGTCAAGATGCCCCTACACT-------------------------
-GAACTGATGATCAGTTAACAAGGTGAGTT--CACATGAGTGTTGTTAATTCGTCTTGGATGATGACGGGCGGGCCATGA
GGCGGAATCGACCGCGGAACAACCGATCCGACAAGGCCAGTTGTGCCGTACCACGAACAGTGACTGAAATCTAGCAGAAG
GGGTGAGGAGAATTTCACCGGGTGGTCCTAGATCCATGGACAGCGAGCAAGTTGTTGCGTAAGGTGTCTGCTCAAGCTTT
ATGGA-GCACGCAGGGAACAAGAATCGCGGAGATCGATGTCCTTGATGATCCTGTCTTCCTA--CTCA-ATTTGCAGTCA
AGAGGTCCTCGTACAACTTTT---ACCAAAAAAAAGAGCATTGAGGGTAAAAATTTGTCGTAGTAAGTAAAGTAAACAAT
CAGAAACTGA-ACCAAGGTGTCTGTTGGTCAGAAGATGAAAAATGTCAGTGTACTGTTCATTAGGAGCTATAC-------
--ATCT------CACGGAGAGCACATCATGCAGCA---TGCTGCACACTGTGAGGCTGCAGGAATTTTCCCATAAGTGAG
CTGATTAGCAGTGCTGCTCAGATGCCAAATCAAGCCAAATTAGGCCAATGGCACAGTGCCACAGAGAAGTAGGCCTCTCT
AATTAA----GCAGCTCCGAGCCAAG-CCCCCGG----CCATAAATACACACGGAGCGCGCGTGCGTCCTCACAGTCACA
------------CTTGCTCCCA------CACGACCATTGCACGCTGGTCTTGAGGAGCTCGACT----------------
---AGTGGAGCTCGC-GTTGAGCGATGGAGCCGGTGGAGTCGGCCAAGTGCGAGTGCTGCGAGCTGCGGGAGGACTGCAC
CCGGGGGTACATCGTGGGCGTCAAGGCCGACTTCGGCGGGCGGTGGCTGTGCGGGCTCTGCTCCGAGGCGGTGAGGGAGG
AGGGCAGGAAGCTTGGGATGGAGGCGGCGCTGCAGGACCACATGGCCTTCTGCGCCGGCTGGTGCCGCGGCAAGGACCCC
GCGCTCCGGGTCGCCGACGGCATGCGCGAGATGCTGCTCCGCCGCCGCCGGCCCATCTCCATCTCCAAGTGAAGCCAAGC
GACGCGGCCCATCATTCACGGCGCGCGATGGATGCAGTGCAGTGTGCACCGCGCCGGCGACGAATGGGTCCAGCC-----
GGCGGTGCCAGCAAGC---------GCCGTTGCA-----------------------------AACAAGATCGACGTAAT
AATTAGCCAAGGGTTCATATGTA---------GTAGCAATACGTGGTACGTAGTATGTATGTAATG---------TGATG
TGGTAGTAATAATCTTAGC---TAG-----CTAGGTTGAAGCTGCATTGCATCATTGGCAGGTAGCTGATGCTGGTGCTA
GCTTTGCTCAAGCTCCGGCCGGCTGTACAAA----AGGGACCCAATAACATGAGAG------------------------
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>chr4A_121
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----------------------------------------TGGCACGGATGGTAGGGCCCTGCCTGCCTGCATTAGTGCC
ACAAGGAAGGAAGCAGGTGAGTTCATGCAGGTTCACTTGAAGCTGCACTCAGAACTTCTCGAGCTAAGCCGGTCTGCCCA
AGAACTGATGATTAGTTAGTTAGCAGGATGGCCAATTGGGTGCTAATTCATCATCATGGATTACGGGCGGCGGGCCATGC
GGCGGAATCGACCGCGGAACGACCGATCCGACAAGGCCAGTTGTGCCGTACCACGAACAGCGACCGAAATCTAGCAGAAG
GGATGAGGAGAAATTCGCCGGGTGGTCCTAGATCCGTGGACAGCGAGCAAGTTGTTGCGTGAGGTGTCTGCTCAAGCTTT
ATGGGGGCACGCCGGGAACAAGAATCGCAGGGATCGATC------------CTGTCTGCCTA--CTCATTTTTGCGGTCA
AGAGGTCATTGCACAACTTTTTTTACCAAAAGAAAAGGCATTCAGGGTAAAAATTTATCATAGGAAGTAAAGTGAGCAAC
CAGAAACTGA-ACCAAGGTGTTTGTTGGCGAGGAGATGAAAAATGTCAGTGTAGTGTTCATTAGGAGCAATGCATCTCAG
TGATCT------CACAGAGAGCGCATTATGCTGCATGCTGCTGCACACTGTGAGGCTGCAGGAATTTTTCCATAAGTGAG
CTGATTAGCAGTGCTGCTCAGATGCCAAATCAGGACAAATTAGGCCAATGGCACAGTGGCACAGAAAGCTAGACCTCTCT
AATTAA----GCAGCTCCGAGCCAAG-CCCCCGGCCATCCATAAATACACACGGAGCGCGCGTGCGTTCTCACAGTCGCA
GTTGCTCCCTGCCTTGCTCCCG------CACCACCATTGCAGGCTGAGCTTGAGCTCGGTCGATCGAAGGACCCTTCACT
TGCAGTGGAGCTCGCGGTTGAGCGATGGAGCCGGTGGAGTCGGCCAAGTGCGAGTGCTGCGAGCTGCGGGAGGACTGCAC
GCGGGGGTACATCGTGGGCGTGAAGGCGGACTTCGGCGGGCGGTGGCTGTGCGGGCTCTGCTCCGAGGCGGTGAGGGAGG
AGGGCAGGAAGCACGGGATGGAGGCGGCGCTGCAGGACCACATGGCCTTCTGCGCCGGCTGGTGCCGCGGCAAGGGCCCC
GCGCTCCGGGTCGCCGACGGCATGCGCCAGATGCTGCTCCGCCGCCGCCGCCCCATCTCCATCTCCAAGTGAGGCCAAGC
CAAGCGACCCGTCCATC--------------A------------TTCACGGCGCCGGCGACGAACGGATCGCGCC-----
GGCGGTGACAACAAGGAGAGCACCGGCCGTTGCATCCGGCGAGTGTTGTACGAGCCCCGGTCGAACAAGATCGACGTAAT
AA---GCCAAGGGTTCATATGTATTTGTGCTAGTAGTAATACGGAGTAT---GTATGTATGTATGTATGTATGCATGATG
TGGTAGTAATAATCTTAGC---TAGGCTAGCTAGGTTGAAGCTGCATTGCACCATTGGCAGGTAGCTGATGCTGGTGCTA
GCTTTGCTCAAGCCCCGGCCGGCTGTACAAAAGGGAGGGACCCAATAACATGAGAG------------------------
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>chr7B_1584
GAGTTG--------------------------------------------------------------------------
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----------------------------------------------------------TTAGGAATTAATTAGTAGATTA
ATTAGCACAT-GCTAATTAATGGATAGTCATTAGGAAAGGGCTGTGTCCAACCCCGAACAGTCATGTCCCTTTTTCTCTT
TCTATTGCCAATAGGCACTTGTTCTGAAGGGATGCCTC--------------TTCTTCCCACCTATTCCAGATGTATATA
TACTTGAGAATCAATGGAAACCAGGACTGATCGTCCTTTCGCTTTCAATCTCGTTTTACTCTAACACATTATCAGCCACG
TTGCTCTCCATCGAGCGAATGGGCGCCAAAGAAAACCGCTCGTCGCCGGCGCAGCCTATGTTTCGTCCTCTCCGTTCGCG
ACCTCGTCGTCGGCGAGGGGTCCTCAAGGCGTCCCGCACCACAAGTGCAGAGGAGACATCGGCCCCGACGCACTCCTCTC
GAGACGGCACCGCGCCCGCCTGCGCCATGGCTAGCAGCGCCAGGCCGTGGCCGCCCTCGCGCGCGCCCGCCCTGCGCTAG
GGCTCGCCCGGGCCCCGGCCGGCCGTGGCCGCGCCAACCCGCGCCAAGCCGTGGCCGGGACCGCCCGTCCGATCCCGCGC
CAGGCTGTGGCCGGTCTCGCGAGGCCATGGCTGTGCTCGCCCTAGCCCGCCCGCGCCATGTTGTGGTCATGCTCCCGCGC
GCCGCCCAGCGCCCGGGCGCGCTCGCGCTGCCGTCGCGTTACTGGGCCCC
>chr7B_1584
GAGTTG--------------------------------------------------------------------------
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----------------------------------------------------------TTAGGAATTAATTAGTAGATTA
ATTAGCACAT-GCTAATTAATGGATAGTCATTAGGAAAGGGGTGTGTCCAACCCCGAACAGTCATGTCCCTTT-TCTTTT
TCTATTGCCAATAGGCACCTGTTCTGAAGGGATGCCTCCGAATAGACACCTCTTCTTCCCACCTCTTCCAGATGTATATA
TACTTGAGAATCAATGGAAACCAGGACTAATTGTCCTTTCGCTTTCAATCTCGTTTTACTCTAACACGTTATCAGCCACG
TTGCTCTCCATCGAGCGAATGGGCGCCAAAGAAAACCGCTCGTCGCCGACGCAGCCTAGGTTTCGTCCTCTCCGTTCGCG
ACCTCGTCGTCGGTGAGGGGTCCTCAAGGCGTCCCGCGCCACGAGTGCAGAGGAGACATCGGCCCCGACGCACTCCTCTC
GAGACGGCACCGCGCCCGCCTGCGCCATGGCTAGCAGCGCCATGCCGTGGCCGCCCTCGCGCGCGCCCGCCCTGCGCTAG
GGCTCGCTCGGACCCCGGCCGGCCGTGG----------CCGCGCCAA---------------------------------
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>chr3B_1587
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--------------------------------------------------------TGTTAGGAATTAATTAGTAGATTA
ATTAGCACATTGCTAATTAATGAATAGTCATTAGAAAAAGGGTGTGTCCAACCCCAAACAGTCATGTCCCTTC-TCTCTT
TCTATTGCCAATAGGCACCTCTTCTGAAGGGATGCCTCCGAACAGACACCTCTTTTTCCCACCTCTTCCGGATGTATATA
TACTTGAGAATTAATGGAAACCAGGACTGATTGTCCTTTCGCTTTCAATCTCGTTTTACTCTAACACGTTATCAGCCGCG
TTGCTCTCCTTCGAGCGAATGGGCGCCAAAGAAAACCGCTCGTCGCCGGCGCAGCCTAGGTTTCGTCCTCTCCGTTCGCG
ACCTCGTCGTCGGCGAGGGGTCCTCAAGGCGTCCCGCGCCACGAGTGCAGAGGAGACATCGGCCCCGACGCACTCCTCTC
GAGACGGCACCGCGCCCGCCTGCGCCATGGCTAGCAGCGCCAGGCCGTGGCCGCCCTCGCGCGCGCCCGCCCTGCGCTAG
GGCTCGCCCGGCCCCCGGCCGGCCGTGG----------CCGCGCCAAGCCGTGGCCGGGACCGCCCGTCCGATCCCGCGC
CAGGCTGTGGCCGGTCTCGCAAGGCCGTGGCTGCGCTCGCCCTAGCCCGCCCGCGCCATGCTATGGTCGTGCTCCCGCGC
GCCGCCCAGCGCCCGGGCGCGCTCGCGCCGCCGCCGCGTTACTGGGCCCC
>chr1B_1587
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--------------------------------------------------------TGTTGGGAATTAATTAGTAGATTA
ATTAGCACAT-GCTAATTAATGAATAGTCATTAGAAAAGGGGTGTGTTCAACCCCGAACAGTCATGTCCCTTC-TCTCTT
TCTATTGTTAATAGACACCTGTTCTGAAGGGATGCCTCCGAACATACACTTCTTTTTCCCACCTCTTTCAGATGTATATA
TACTTGAGAATCAATGGAAACCAGGACTGATTGTCCTTTCGCTTTCAATCTCGTTTTACTCTAACACGTTATCAGCCACG
TTGCTCTCCTTCGAGCGAATGGGCGCCAAAGAAAACCGCTCGTCGCCGGCGCAGCCTAGGTTTCGTCCTCTCCGTTCGCG
ACCTCGTCGTCGGCGAGGGGTCCTCAAGGCGTCCCGCGCCACGAGTGCAGAGGAGACATCGGCCCCGACGCACTCCTCTC
GAGACGGCACCGCGCCCGCCTGCGCCATGGCTAGCAGCGCCAGGCCGTGGCCGCCCTCGCGCGCGCCCGCCCTGCGCTAG
GGCTCGCCCGGCCCCCGGCCGGCCGTGG----------CCGCGCCAAGCCGTGGCCGGGACCGCCCGTCCGATCCCGCGC
CAGGCTGTGGCCGGTCTCGCAAGGCCGTGGCTGCGCTCGCCCTAGCCCGCCCGCGCCATGCTATGGTCGTGCTCCCGCGC
GCCGCCCAGCGCCCGGGCGCGCTCGCGCCGCCGCCGCGTTACTGGGCCCC
>SNPs
-----S--------------S---------------SS------------------------------------------
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-----------------------------------S--------------------------------------------
--------------------------S-S--------------------S-----S----S-------------------
-S---------------------------------------------------S--S----------------------S
-------S----------S---------------------------------------------------S---------
------------------------------------------S--------------SSSSSSS----------------
------S---------SS----------------------------------S----------S----------------
--------SSS---S-----------------------------------------------------------------
-----SSSSSSS--S-----------------------------------------------------------------
----------S---------------------------------------------------------------------
------SSSS----------------S--------------------------------------------SSS------
S------S--------------SSSSSS-------------------S--------------------SS-S--------
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-----------------------------------------------------------------------------S--
------------S-------------------------------------------------------------------
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-----------S------S--------------------------------------------------------SSSSS
---------S----------------------------------------------------------------S-----
-----------------------SSS--------------------S---------------------------------
-------------------SSS-------------------------------S-------------------S------
---------------------------------------S----------------------------------------
--------------------------S--------------S--------------------------------------
--------------------------S----------S------------------------------------------
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>forward_968
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--------------------------------------------------------------------CTCGGTGTCACA
CTTGCTCT------------------------------------------------------------------------
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>reverse_1867
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--------------------------GAGGGATGCCTTCGAACAGA----------------------------------
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