>input_sequence_84878
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--------------------------------ATGGCCCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAG
CGGCTGGCCCCAGCCACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGACCGC
GGACGGGAAGGCGGCCAGGGAGGCTGAGAAGGCCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCCACTACC
GCCCCGCCAACCGCGCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGACAGACCTACGCACGGGCTTGA
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>chr3B_1_TraesCS3B01G205100
TAAACCAGACCATACATGGCAACAGTTGCAGTTGTCCAAAATGGCATCTCGCACTTGACCTGAGATGACAACGGCAATTG
AGCAACCATGTCAACTGCAGTTAAACGGACATTGAAGAGGGTCCGGACCACGACAACTGTGGGGACGCGTGCTGACTGTC
ATGCGGGGCGTGCCGGACCGTGAGGTAGGTGACTGAGAGAGGTTGTGTGGCTGTTATCCATTTTGCCCACACGTAGGCGG
GTAAGAGGGATCGCAAGGAAAAAAAGACGTGTGTGCGCAAGTTGTTTTGCCCGCACGTAAGCGTGTAGGCTGGTCCTTTT
AGACACCACAGAAAACGTGTGACCAGACCCCTTAACGTCCACACGTGTGGCAGTTATCGTCGCTCATAATGTTTTTGTTT
TCGCATCGTGTTCCACTACCCCGAAT---------------------------ATACGTGGATAATGGTTACTAATGCAA
CGTGTAACTTAGTACGCCAACGACGTAATCCTGAAAATTATTTTTTACTGCGCACCAGACCGAGAAGAGCAGAGGCAACT
TCGCCGTTCACAACGAAGCAAACACAACTTGGCTTACCCT-CTCTCAAAAGTCCAAATTGTCACCAACTTTTT-------
ATTAAGCGCGCGTCGCTCTCACTG-GCTCATGTCGACCCGGCAATGCACGCTATCATCAGCTCGAGAAGAGTAAACAAAA
ATATCAG-------------------------GTCGACCACGTAGGAAGGAAGCGACGAACCCGCAGCGCCATTTCCTGC
GTCC-GTCGCGTCGGCACGTGCCGGTTCGCCGCGATGAGTGACGGCGCCCAAAAGCCACCGAATCTTTGACAAAAC-CCG
CGCCGTTGGGCAAGTTTTACCC-GCCTGCCCCTGCCCCGTCTCCCTTTAAATACGGGCCCTGGC--CTCCCTCGTTCCCC
CACACCACC---AAAGCCCACCCAGCCTCAAACGCCCACGTTGGAGCAGT---AGCAGCAGCACAGAGCCGGAGCCCTCC
AGCCGTCCGATCGTCCGACACAGACAGATCCGATGGCCCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAG
CGGCTGGCCCCAGCCACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGACCGC
GGACGGGAAGGCGGCCAGGGAGGCTGAGAAGGCCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCCACTACC
GCCCCGCCAACCGCGCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGACAGACCTACGCACGGGCTTGA
AGCCC-CGCTCGA--CGACCCTCCTGGCCCCGCCATGGAAGG-AAAACTGCTAT-GCTAGGTAACG---------AGGGA
AGAGGCAGGAGGCGCTCGTTCGCCGAGCGCTGCGCGCGA------------------CGCGGCTTAACGACGGATCA-TC
ATCATGATCGATCCTATACTACTGGGGAGGTGCGGG--------TTGGATGTTTCCCATTGT------------GTGCGT
GCGTTCGTCTGGG--------CTTGGATGCCCTGCTATAGTGTTGGTGTGCTCAGATCAGATGTATCTCTCGTCGAGCAG
GGCTTGTACCTTTTACTTTTATTTACAGCTAGTA--ATAATAACGAAAGAATCCAGCGTTTTCTTTGTTCTAAACATACT
CCTTGCTGTTTGAATCATTCTTCTGATTATCTTCCAAATGAAGCCCCAGTACAGGGTCATGGCAGCCACCAATACAAGCT
CGAGCCACCGTACCGCGACCCGTGCTTGTACGGGCACGCCACAGAAATGTGTCACTGGCGTCTGACGACGCGCGATGTCA
GTGTGCCACTCACACAAGATCTTTTGTATTAGGCCAACTCCACCGCGGAATCCCAAACGGACATCTGTTTTGTTCGAATT
CTGTCATTTTAGGTAGGGCAATGGGATCGTGTCCGGTCCTGTCCTGGGATGCGGTGGCTGTCCGTCCATCCTTTTGCCTC
ATCTCGTCCGCCAAAGCCTAAAATGCCCATATTTTCATACGAAAACAAGTTTGCACGTTCAAATATTAATTGTCTGAAAA
TTAAAATAGTTTTACAACCCAATCGAAATTGTCTCTAATAAAGATAGTTTCACAACCAAATCGAAATTATTTTGAATGAA
CATAAAACGAACCAATACATCTATCGGTTGCCAATATGCTCCCAGACGTGCTCAACCAAGTCATTTTGAAGAGCCTTATG
AGTGTGCTAATCACGCAGCTCACGATGGAACGGGCCGAACTGATCAAACGTGGTCGGTTCTTGATGCAGGGGCTCAACAT
TGTCACCTTGATAGTCAAATCCT
>chr3D_386
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-----------------------------------------------------------------ATAATGTTTTTGTTT
TCGCATCGTGTTCTACTACCCAGAATACGTGGATAAACTACCCTAAAAAAAGAATACGTGGATAAACCTTACTAGTGCAA
CGTGTAACGTAGTACGCCAACGACGTAC-CCTGAAAATTA-TTTTTACTGCGCGCCAAACCGAGAAGAGCA-AGGCAACT
TCGCCGTTCACAACGAAGCAACCACGACTACGGAT-TACCCCTCTCAAAAGTCCAAATTGTCACCAACTTTTT-------
ATTAAGCGCGCGTCGCGCTCACCAAGCCCATGTCGACCCGGCAATGCACGCTAACATCAGCTCGAGAAGAGTAAACAAAA
ATATCAG-------------------------GTCGACCACGTAGGAAGGAAGCGACGAACCCGCGGCGCCATTTCCTGC
GTCC-GTCGCGTCGGCACGTGCCGGTACGCCGTGCTGAGTGACGGCGCCCAAAAGCCACCAAATCTTTGACAAAACCCCG
CGCCGTTCCGCCCTTTTTACCTCGCCTGCCCCT-CCCCGTCCCTCTTTATATACGGCCCG--------CCCTCGTTCGCC
CACACCACCAATAAAGCCCACCAAGCCTCAAACGCCCACGTTGGAGCAGCAGCAGCACCAGCACCGAGCCGGAGCCCACC
AGCCGTCCGATAA----------ACAGATCCGATGGCTCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAG
CGGCTGGCCCCGGCCA---CCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGGCCGC
GGACGGGAAGGCGGCCAGGGAGGCCGAGAAGGCCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCCACTACC
GCCCCGCCAACCGCGCCGTCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGGCAGACCTACGCACGGGCTTGA
AGGCCACGCTCGA--CGACCCTCCTGGCCCCGCCATGGAAGG-AAAACTGCTAT-GCTACGTAAAA---------GGGGA
AGC--CAGGCGGGGCTCGTTCGCCGAGCGCAGCGCCGCGGGCGGCTGGTGTCGCTGGCGCGGCTTAACGACGCATCAATC
ATCATCGTCGATCCTATACTACGGAGGAGATGCGGCCTGGATGTTTGGCTGTTTCCCATTGTGTGTGTGTGCGCGTGCGT
GCGTGCGTCCGGG--------CTTGGATGCCCTGCTATAGTGTTCATGTGCTCAGATCAGATGTATTTCTCGTCGAGCAG
GGCTTGTACCTTTTACTTTTACAGCTA---AGTA--TTAATAACGAAAGAATCTAGCGTTTTCTTT--TCCTAAACA---
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>chr3A_489
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-----------------------------------AATTA-ATTTTAGTGCGCACCAAACCGAGAAGAGCTAGGGCAACT
TCGCCGTTGACAACGAACCCAACACGACCTGGCTTATACTCCTCTCAAAAGTCCTAATTGCCACCAACTTTTT-------
ATTAAACGTGCGTCGCTCTCGCTG-GCTCATGTCGACCGGGCGAGGCACGGCAACATCAGCTCGAGAAGAGTAAACAAAA
ATATCAAGTCGACTCTCTCAAAAAAAAATCAAGTCGACCACGTAGGAAGGAAGCGACGAACCCGCGGCGCCATTTCCTGC
GTCC-GTCGCGTCGGCACGTGCCGGTTCGCCGCGCTGAGTGACGGCGCCCAAAAGCCACCGAATCTTTGACAAAACCCCG
TGCCGTTGGGCCCTTTTTACTGCGCCTGCCCCT-CCCCGTCTCCCTTTATATACGGGCCCTGGC--CTCTCTCGTTCCCC
CACACCACC---AAAGCCCACCAAGCCTCAAACGCCCACGTTGGAGCAGT---AGCAGCAGCACAGAGCCAGAGCCAACC
AGCCGTTCGATCGTCCAACGCAGACGGATCCGATGGCCCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAG
CGGCTGGCCCCGGCCACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGGCCGC
GGACGGGAAGGCGGCCAGGGAGGCCGAGAAGGCCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCCACTACC
GCCCCGCCAACCGCGCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGACAGACCTACGCACGGGCCTGA
AGCCC-GGCTCCACTCGACCCTCCTGGTCCCGCCATGGAAAACAGAACTGCTACCGCTACGTAACGAGGGAAGATAGGGA
AGAGGCAGGCGGGGCTCGTTCGCCGCGCGCGGCTGT----------------------GCGGCTTCACGACGCATC--TC
ATCATCATCGATCCTATACTACGGGGGAGATGCGGCCTGGACGTTTGGCTGTTTCCCATTGTGTT--TGTGTGCGTGCGT
GCGTGCGTCTGGG--------CTTGGA---------------------TGCTCAGATCAGATGTATTTTTGGTCGAGCAG
GGCTTGTACCTTTTACTTTTACAGTTA---GGTATTATAATAACAAAAGAATCCAGCGTTTTTCTTGTTCCTAAACA---
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>chr3D_545
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-----------AACGAAACAAGCACGACCTGGCTTATACTCCTCTCAAAAGTCCAAATTGTCACCAACTTTTAATATTTA
ATTAAACGTGCGTCGCTCTCGCTG-GCTCATGTCGTCCCGGCAATGCACGCCAACGTCAGCTCGAGAAGAGTAAACAAAA
ATATCAG-------------------------GTCGACCACGTAGGAAGGAAGCGACGAACCAGCGGCGCCATTTCCTGC
GTCCCGTCGCGTGGGCACGTGCCGGTTCGCCGCGCCGAGTGACGGCTCCCAAAAGCCACCGAATCTTTGACAAAACCCCG
CGCCGTTGGGCTCTTTTTACCCCGCCTACCCCT-CCCCGTATCCCTTTAAAAACGGGCCCTGGCCTCTCTCTCGTCCCCC
CACACCACC---AAAGCC---------TCAAACGCCCACGTTGGAGCAGT---AGCAGCAGCAAAGAGCCGGAGCCCTCC
AGCCGTCCGATCTTCCGACGCAGACGGATCCGATGGCCCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAG
CGGCTGGCCCCGGCCACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGGCCGC
GGACGGGAAGGCGGCCAGGGAGGCCGAGAAGGTCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCTACTACC
GCCCCGCCAACCGCGCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGACAGACCTACGCACGGGCCTAA
AGCCC-CGCTCCGCTTGACCCTCCTGGTCCCGCCATGGAAAACAAAACTGCTAC-GTTACGTAACG---------AGGGA
AGAGGCAGGCGTGGCTCTTTCGCCGAGCGCCGCGCGCCGC----------------GCGCGGCTTAACGACGCATCAATC
ATCATCATCGATCCTATACTACGGGGGAGATGCAGCCTGGGTGTTTCCCAT--------------TGTGTGTGCGTGCGT
GCGTGCGTCTGGGCAGCTGGGCTTGGATGCCCTGCTATAGTGTTGGTGTGCTCAGATCAGATGTATTTCTCGTCGAGCAG
GGCTTGTACCTTTTATTTTTATTT--------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-------------S-------S-------------------------------------------SSS------S-----
--------S------------------SS-----------S----------------S-------------S--------
-------------------------S----------SS------------------------------------------
-----------------------------------------------------S--------------------------
-----------------------------------------------------------------S--------------
----------------------------------S---------------------------------------------
-----------SSS-------------------S----------------------------------------------
----------------------S---------------------------------------------------------
-------------------S------------------------------------------------------------
-----------S---------------------------------------------------------------S----
------------------------S-------------------------------------------------------
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-----------------------------------------------------------S--------------------
---------S--S-----------------S------SS---------------------------------S-------
-----S----------------S------S-----S------------S-------------------------------
----S-------------------------------------------------------------S-------------
------------------------SS-SSS----------------------------------------SS--SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_88
--------------------------------------------------------------------CAACGGCAATTG
AGCAACCA------------------------------------------------------------------------
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>reverse_2061
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------------------------------------------------------------TCCGTCCATCCTTTTGCCTC
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