>input_sequence_84840
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATGTCTGGCGGTATCAAGTCTGAAGTCCC
CCAGCCATCTTCATCTCCTCCTGTGAAGCCCACCTCAACTTCGTGCCGAAAGAAGAACTCCGG---CACCTCGTTTGTCA
CGCAACTGAGGGATCACTTCCATGAGTTTATTCATGCCTCCATGGGCGAACACAGGACATGCTTAACAAACACTGTCAAG
AAATTGTTTGCGATGTCAAAGGCTGTCGCAGAGGGGACCGCTGGGGCAAAAGAAGCTGGAGCTGAAAGCGGTTTGCCACT
ACAGAGTGAAGTGTCACGGTAG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr1D_1_TraesCS1D01G223100
CGATACATCAAATCACGCAATTGCACTTGCATGTTTTTGTTTGGTGGCAATTTTGTTTAGGGTCTTTAGGAATTAAGAAC
CATTGTGCATATATGTGTTGCACTTTGATGCTTCTTTTTTTATTGCAACCAATAATCGGCGGTCACCTTAATGTACTCCT
GTCGGTGTACATATTGGTTCACCTGTTAGTGAAGCAATCAGCAAGATAAGAAATGTATCTTCTGAGCAGTATGTTCCACC
TTAACTGATGTTTGTGCTTGTGCTTTGGTGTTTATGTCTTTAGATTACC-AGTATTTGATTGTGGATTGCCTGCTAGTTT
GTTAGGAAGTTTGTACTGTCTAGATTTGTTTTACAAAACTGGTGTGCAATTGCTGAGTGGAGAGTCTTCTCTCTGTATAA
TTATATCATGCCCCCTTCCTGAAACAACCTTATGCTAGCACATGGTGGCTTATCTTTTGAAGCATACACACACACAATTA
GTCCAGGAAATCACATGTTGCTCTGTAGGCTACAATATTGGTGCCTGTCCCTTCATACCCCTTCCGTCCGGAAATACTTG
TCATCAAAATGAATAAAAGGAGATGAATCTAGATGTATTTTAGTTCTAGATACATCCCTTTTTATCCATTTTGATGACAA
GTATTTTCGGACGGAGGGAGTACATGTAAAACTGGAATCATGTGGTGTTTTATTAGAGGTTATATGCA--TTTTTTTTGT
TTATAGTAGCTGGAAGTATTCTAATGCTTAGGATTTGGGTTCATCATTTTTACCATTGACTAG--TATATACATTGAAAA
AGATGATTGATTTCTTTTGTTGTACACATTCTCTGTGAAACTCAAATGTAAAATTAGTTTTTT-----TTTTTCAAATAG
GCTGCTATTTTTCTTTTCTTTTTTAAGGGGGGCTACTATTTTTCTGTTAGTGCTCATCATGATGGATTGAATTGAAGACT
TTTGTCCATTTT-TCTCACTTCACTTTCAAACATATGCAGTATCATCCACAATGTCTGGCGGTATCAAGTCTGAAGTCCC
CCAGCCATCTTCATCTCCTCCTGTGAAGCCCACCTCAACTTCGTGCCGAAAGAAGAACTCCGG---CACCTCGTTTGTCA
CGCAACTGAGGGATCACTTCCATGAGTTTATTCATGCCTCCATGGGCGAACACAGGACATGCTTAACAAACACTGTCAAG
AAATTGTTTGCGATGTCAAAGGCTGTCGCAGAGGGGACCGCTGGGGCAAAAGAAGCTGGAGCTGAAAGCGGTTTGCCACT
ACAGAGTGAAGTGTCACGGTAGAAACA-------TATGATGTAATGTCAGTTCTCTGTAGTGAAAGTTTGTCGCTGTTAC
TAATCATAATCCTCAAGTCAAACAGTAGAGAGTTTCAAATTTTTGGTGAATATATTATGTACAGTTACATC--------A
TGCTGTCGTCTTTTGACTGTCTATGCAAGAAGAGAAACACTTCTTTCTCTTCTATCTAATAGATAGAATCAAACTACCCA
ACACTTGTTTTTTCTGTA--TCTGATCTTTTGCCTATAAAAACGATGTCTTTGTCTATCTACAAGTGCGTCACGAGTATG
ACCAGGACCGCACAAATAACTAACCTAGCAGAGGAAGCAGCCCAACTGCTCCCCGCCGGCGAGCCGGAGGTGTCCGTCGC
GTCGTAGAGGGAGCTGAGCTTGAAATCCGGGTTGGACCCGTACAGCAGCTGCACGCCTTCGACGTCGTCGACGGTGAGGT
CGGCCTTCTTCTCCAGCGGCTTGATGCTCGGGTACATGACGGCCTGCGGCGAAGTCGAGTGTCCGAGCCCGAGGACGTGG
CCGATCTCGTGAGTCGCCACGGACTCGAGGTCGATGGCCGCCGAGGCTTTTGTTTCGCCGGCGAAGTCCACCGCCCACCG
CTCGGCGGCGTCGAGGTGGAGCCGCCCGTTCTTGGGGGAGAAGGCGTGGCCGAGCACGCCGAGCGGCCCGTCGAAGGGCA
CCCCGTCGCCGTGGCTGCCCCCGTAGAACCCCACCTTGATGTCGGCCTCGTCGTAGTCGTCCGTCTCGACGAACGCCACG
GGGATGACCCGCGCCCACCGCTCGAACGCGCGCCGGAACACGGCCCTCACGTCGTCGTCCGGCAGGTAGCCGACGGTGGC
CGTCGGCGACACGGCGTACGTGAGCACGACCGGGTCCGGGTCCGACCGCCGCGTCCACCGCGGCTTGCCCTTGAAGAACG
TGAACCGGCTGACCGCGCCGCCGTGCTCTGGCGAGACGGACGCGCCGTGGTCGTCCTGGACGCCGCAGCGCGGGGACAT
>chr1A_2
-GATACATCAGATCACACAATTACACTTGCAAGTTTTTGTTTGGTGGCAATTTTGTTTAGGGTCTTTAGGAATTAAGAAC
CATTGTGAATATATGTGTTGCACTTTGATGCTTCTTTTTTTATTGCAATCAATAATCGGTGGTCACCTTAATGTACTCCT
GTCGGTGTACATATTGGTTCACCTGTTAGTGAAGCAATCACCAAGATAACAAATGTATCTTCTGAGCAGTATGTTCCACC
TTAACTGATGTTTGTGCTTGTGCTTTGGTGTTTTTGTCTTTAGAGTACC-AGTATTTGATTGTGGATTGCCTGCTAGTTT
GTTAGGAAGTTTGTACTGTCTACATTTGTTTTACAGAACTGGTGTGCAATTGTTGAGAGGAGAGTCTTCTCTCTGTATAA
TTATATCATGCGCCCTTCCCGAAACAACCTTATGCTAACACATGGTGGCTCATCTTTTGAAGCATACACACACACAATTA
GTCAAGGATATCACATGTTGCTCTATAGACTACGATATTGGTGCCTGTCCCTTCA-------------------------
--------------------------------------------------------------------------------
--------------------TACATGTAAAACTGGAATCATGTGGTGTTTGGTTAGAGGTTATATGCA---TTTTTTTGT
TTATAGTAGCTGGAAGTATTCTAATGCTTAGGATTTGGATTCATTATTTTTACCATTGACTAGTATATATACATTGAAAA
AGATGATTGATTTCTTTTGTTGTACATATTCTCTGTGAAACTCAAATGTAAAATTAGTTTTTT-----TTTT-CAAATAG
GCTGCTATTTTTCTTTTCTTTTTTAAGGGGGACTGCTATTTTTCATTGGTAT-TCATCATGATGGATTGAATTGCAGACT
TTTGTCCATTTTGTCTCACTTTAGTTTCAAATATATGCAGTGTCATCCACAATGTCTGGCGATGTCCAATCTGAAGTCCC
CCAGCCACCTTCATCTT---CTGTAAAGCCCGCCTCAACTTCGTGCCGAAAGAAGAACTCCGG---CACCTCGTTTGTCA
CGCAACTGAGGGATCACTTCCACGAGTTTATTCATGCCTCCATGGACGAACACAGGACATGCTTAACAAACACTGTCAAG
AAATTGTTTGCGATGTCAAAGGGAGTCGCAGAGGGGACTGCTGGGGCAAAAGAAGCTGGAGCTGAAAGCGTTTTGCCACT
TCAGAGTGAAGTGTCACGGTAGAAACA-------TATGATGCAATGTCAGTTCTGTGTAGTGAAATTTTGTCGCTGTCAC
CAAGCATAATCCTCGAGTCAAACAGTAGA--GTTTCAAATTTTTGGTGAATATATTATGTACAGTTACATCATGCAATCA
TGCTGTCGTCATTTGACTGTCTATGCAAGAAGAGAAACATTTCTTTCTCTTCTATCTA-TAGATAGAATCAGGGTACCCA
ACAATTG-TTTTTTCTGTATTCTGATCTTTTGCCTATAAAAACGATGTCTTTGTCTATCTACAAGTGCGTCACGAGTATG
ACCAGGACCGCACAAAGAACTACCCCAGCCGAGGAAGCAGCCCAACTGCTCCCCGCCGGCGAGCCGGAGGTGTCCGTCGC
GTCGTAGAGGGAGCTGAGCCTGAAATCCGGGTTGGACCCGTACAGCAGCTGCACGCCTTCGACGTCGTCGACGGTGAGGT
CGGCCTTCTTCTCCAGCGGTTTGATGCTCGGGTACATGACGGCCTGCGGCGAAGTCGAGTGTCCGAGCCCGAGGACGTGG
CCGATCTCGTGAGTCGCCACGGACTCCAGGTCGATGGCCGCGGAAGCTTTTGTTTCGCCAGCGAAGTCCACCGCCCACCG
CTCCGCGGCGTCGAGGTGGAGCCGCCCGTTCTTGGGGGAGAAGGCGTGGCCGAGCACGCCGAGCGGCCCGTCGAAGGGCA
CCCCGTCGCCGTGGCTGCCCTCGTAGAACCCCACCTTGATGTCGGCCTCGTCGTAGTCGTCCGTCTCGACGAACGCCACG
GGGATGACCCGCGCCCACCGCTCGAACGCGCGCCGGAACACGGCCCTCACGTCGTTGGGCGCCAGGTAGCCGACGGTGGC
CGTCGGCGACACGGCGTACGTGAGCACAACCGGGTCCGGGTCCGACCGCCGCGTCCACCGCGGCTTGCCCTTGAAGAAGG
TGAACCGGCTGACCGCGCCGCCGTGCTCCGGCGAGACGGACGCGCCGTGGTCGTCCTGGACGCCGCAGCGCGGGGACAT
>chr1B_208
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAGAAATGTATCTTCTAAGCAGTATGTTCCACC
TTAACTGATGTTTGTGCTTGAGCTTTGGTGTTTGTCT-TTTAGAGTACCAAGTATTTGATTGTCGATTGCCTGCTAGTTT
GTTAAGAAGTTTGTACTGTCTAGATTTGTTTTACAAAACTGGTGTGCAATTGCTGAGTGGAGAGTCTTCTGTCTGTATAA
TCATATCATAGTCCCTTCCTGAAACAACCTTATATTAACACATGCGGGCTCATCTT------------------------
-----------------TTGCTCTATAGACTACAATATTGGTGCTTATCCCTTAA-------------------------
--------------------------------------------------------------------------------
--------------------TA------AAACTAGATTCATGTGGTCTTTGTTTAGAAGTTATATGCATTTTTTTTTTGT
TTATAGTAGCTGGAAGTATTCTAATGCTTAGGATTTGGATTCATCATTTTTACCATTGACTAT--TATATACATTGAAAA
GGATGATTGATTTCTTTTGTTGTACATATTCTCTGTGAAACTCAAATGTAAAATTAGTTTTTCTTTTCTTTT-CAAATAG
GCTGCTATTTTCCTGTT-------------------------------AGTGCTCATCAT-ATGGATTGAATTGCAGACT
TTTGTCCATTTTGTCTCACTTTAGTTTCAAATATATGCAGTGTCATCCACAATGTATGGCGATGTCCAATCTGAAGTCCC
CCAGCCATCTTCATCTC---CTGTGAAGCCCGCCTCAACTTCGTGCCGAAAGACGAACTCCGTCAACACCTCTTTTGTCA
CGCAACTAAGAGATCACTTCCACGAGTTTATTCATGCCTCCATGGACGAACACAGGACATGCTTAACAAACACTGTCAAG
AAATTGTTTGCGATGTCAAAGGCCGTCGCAGAGAGAACCGCTGGGGCAAAAGAAGCTGGAGCTGAAAGCGTTTTGCCACT
TCAGAGTGAAGTGTCGCGGTAGAAACATACTCCGTATGATGCAATGTCAGTTCTCTGTACTGAAAGTTTGTCGCTGTCAC
TAAGCATAACCCTCAAGTCAAACAGTAGA--GTTTCAAATTTTTGGTGAATATATTATGTACAGTTACATC--------A
TGCTGTCGTCTTTTGACTGTCTATGCAAGAAGAGAAACACTTCTTTCTCTTCTATCTA-TAGATAGAATCAGGCTACCCA
ACACTTGTTTTTTTCTGTATTCTGATCTTTTGCCTATAAAAACGATGTCTTTGTCTATCTACAAGTGCGTCACAAGTATG
ACCAGGACCGCACAAAGAACTAACCCAGCCGAGGAAGCAGACCAACTGCTCCCTGCCGGCGAGCCGGAGGTGTCCGTCGC
GTCGTAGAGGGAGCTGAGCCTGAAATCCGGGTTGGACCCGTACAGCAGCTGCACGCCTTCGACGTCGTCGACGGTGAGGT
CGGCCTTCTTCTCCAGCGGCTTGATGCTCGGGTACATGACGGCCTGCGGCGAAGTCGAGTGTCCGAGCCCGAGGACGTGG
CCGATCTCGTGAGTCGCCACGGACTCAAGGTCGATGGCCGCCGAGGCTTTCGTTTCGCCGGCGAAGTCCACCGCCCACTG
CTCAGCGGCGTCGAGGTGGAGCCGCCCGTTCTTGGGAGAGAAGGCGTGGCCGAGCACGCCGAGCGGCCCGTCAAAGGGCA
CCCCGTCGCCGTGGCTGCCCTCGTAGAACCCCACCTTGATCTCGGCCTCGTCGTAGTCGTCCGTCTCGACGAACGCCACG
GGGATGACCCGCGCCCACCGCTCGAACGCGCGCCGGAACACGGCCCTCACGTCGTCGGCTGGCAGGTAGCCGACGGTGGC
CGTCGGCGACACGGCGTACGTGAGCACGACCGGGTCCGGGTCCGACCGCCGCGTCCACCGCGGCTTGCCCTTGAAGAACG
TGAACCGACTGACCGCGCCGCCGTGCTCTGGCGAGACGGACGCGCCGTGGTCGTCCTGGACGCCGCAGCGCGGGGACAT
>SNPs
S---------S-----S-----S--------S------------------------------------------------
-------S----------------------------------------S----------S--------------------
----------------------------------------S---------------------------------------
---------------------------------S----------S-----------------------------------
--------------------------------------------------------------------------------
-----------S-------------------------S------------S-----------------------------
---S----S---------------S---S--------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------SS----------------------------
--------------------------------------S-----------------------------------------
--------------------------S---------------------------------------------S-------
-------------------------------S--S---------SS-S--------------------------S-----
---------------------S-S-------S---------S-------------------S-S--S-S-----------
-----------------SSS-----------S------------------------------------------------
----------------------S----------------------S----------------------------------
-----------------------S----------------------------------------------S---------
S----------------------------------------S-----------------------------------S--
---S-------------------------SS-------------------------------------------------
----------------------------------------------------------S------------SS-------
-------------SSSSS--------------------------------------------------------------
----------------S--------S---S--------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
---S----------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>forward_547
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCCCTTCATACCCCTTCCGT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>reverse_2021
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCGTAGAACCCCACCTTGAT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
