>input_sequence_84816
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------ATGCCCCTAGACTTCACCAAGCACTTCCTCGTCGTGACAACGGTGCTCAAGCTGAA
GACGAACACATGTTGCTCATGGAGGGTCACTGTGAGGCTGATGAACGACAT--GGTCACCCTCGATGAGGGTTGGGCCAC
CTTCGTCGTCGTCTATCAGATCAAGATCGGGTT--ACATGGTGACCTTCAAGTTGCTGACTCCCGACACGCTCAAGGTCG
TCATCTTCG---ACGACGACGATATTGAAGTGGTGACCAAGTGTGGGAGACACGACGACGCCTTCGCCATGAACGGCTAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3A_1_TraesCS3A01G079700
TCGGCGACCCTGGAGGCGGTTTTAGTGGTGGGTGGCCTTGTTCTTGTCCTCTGACTGGACCACCGTATCGTCGTCCTCGC
CAGAGTCCAGATCGATTGGCAAAGTACGTTGGCTTGGCTCCGACGCCCTGAAAACCATCTCCACCGCTTCTTCGTCCTCC
TCC---------------------AGCGCCACCAAAGTCCTATTCACGTACGCTGCGGCACGCTGTTCATGAGGAGCCAT
GTACTCCCTGTACTTGGCCCACCTTGCCCTCTATCCAGCGACACTGGGCTAGAGTCGGCCTGATTCATGGCCCAGCGAAG
GATGTCGACTGACATAGCACCCTTCGTTGGGTCAGGAATCTACGTCTTCAACTCCTCCACCGTCGCCTTCTTCACCACAA
TGTCTGCCTCGTTGTGCATGTCTTCGATGCTACTGAAGTTCGAGCACACTTCAATGGTGTTCTCAAACTTGGTGCGGTCA
CCAAGCGAGCACCCGAGGAAGAAAGCCCTCCATCCAATGCCCCAAGGGAAGGGGTTGGGGTTAGGGCTGGACATAAAGCT
CGAAGCTCGGTGAGCTTAATGAGCGCTCGGTAACTCGACTCATTTGAGCTTGAGACTAGGGTTGGAGCTCATGGAGATGG
ATAGGAGGAAGAGTGAGAGAC-------AGAGACGAGA----GAGTGTGGTTGTGGGTAAGTAGTGATCGTTGGGGTGGG
TAAATATTGGGGCTTTGGACGATAGGTTTTAGTGGCGATCAACCTT--------------------------TGAACTTT
GTGCTCTTCATAACGCCATGAACTTTTGTGATGTTCATAACAT--------------------------AGATCGAGACG
GAGAACAAT------------------------GACAAGGGCAAGGAGGTGGTGCCGCCTTTG-----------------
-------------GAGGTGGTGCCGCACATGACCAAGGAGGTGTAGCCCACGGACGACGAG--GTCGTCGTGGAGGAGCC
CCCTAGCGGCAAGCGCCA--AAACTACGCGCAGTACTATGAGGAGGGTAGGCCAACTCAC-TTCTGCAAGCAGATACTTG
CCCTGAAGCTCGA-GTGCATACCAATGCCCCTAGACTTCACCAAGCACTTCCTCGTCGTGACAACGGTGCTCAAGCTGAA
GACGAACACATGTTGCTCATGGAGGGTCACTGTGAGGCTGATGAACGACAT--GGTCACCCTCGATGAGGGTTGGGCCAC
CTTCGTCGTCGTCTATCAGATCAAGATCGGGTT--ACATGGTGACCTTCAAGTTGCTGACTCCCGACACGCTCAAGGTCG
TCATCTTCG---ACGACGACGATATTGAAGTGGTGACCAAGTGTGGGAGACACGACGACGCCTTCGCCATGAACGGCTAA
GACAGCTCTCCGTTGCTCCAGCTGGTTTAGTATCGACTATATCATACTGCTTTGCTTG-AAAACTGCTATGTTTAAGTGT
GGTACTACGTTTAAAACTATTTGCT----ATGGTTTAGAACTATGTTAATATGCTATCTTT-TGTCTGTC-TTTGGGTTG
TTCTACACGCCCATGTGTCCTGGTAATCTCACCGCCTCACTGAAGAGGTTAC----------GC-------GTTGCATGA
AATCAAACACCATGC----CTTGTATTTCCGCCTAAGCAAGCGGACAA-CCAAACCATGCCGCCTTTCATTGCGCCCCAT
GCAGGC----------------AATCAAACTATATGCAGATGTTGGTTTTTGTT-TGTTTTCTCTCAGCCAGGCCCAACT
GGGAAGTGCATACTATGCAGACAACCTCTGCTACGAGACCCAAACACGCCCTTTGTCTCAACTGGCAACAACGCCATGCA
GCGCACCGCCACAACCTATCCCTATTTCTGTTCATACGAACACAGTATAAATGAATACACATACTCATCTACCGCAA---
---------TGTCACCGCTCATCTACCGTCACAGAAATCTGTCAGGATACAAACCACACCCGAAAATTACATACATGACC
ATGTGATGGGTTTGTTTAACGCAAGCGTTAACTAGTACATACACTCTAGATCAGTACATGGGATCCATATTATGTCTAAT
ACTCCCTCCGTTCAGAAATACTCGTCTTAGAAATGGTTGTATCTAGACTTGTTTTAGTTCTAGATACAACCATTTCTAAG
ACAAGTATTTCCGAACGGAGGGAGTAGAAGAAAAAAACCCTGCACTTCTCTGGACGATGTTGCTTTGCAAATGATCATTC
TGGCTCCTGCGGAAGCAACTCAAGCAAGTGTACATGGCTTCCAATCGCACCTGCGATCCCATCTAGAGGTCTAGCTACGA
CATGCATCAGGCATGCCCATTCCTGGATGAAAATGGTCATAAAAAATATATTAGCCCTCTGACAATCATCTTGATCAGAT
AGTCATACATTCACATCG
>chr4D_3
--GGCGGCCCTTGAGGCGGTTGGAGTGGTGGGTGGCCTTGTTCTTGTCCTCCGGCGGGACCACCGTCTCGTCGTCCTCGC
CCGAGTCCATATCGATTGTCAAAGTAAAGTGGCCTGGCTCTAGTGCTCTGACAACCATCTCCATCGCTTCTTCCTCCTCC
TCCGGCTCCAAACCAATGACCCCCAGTGCCACCAAAGTACTATTCCAGTACATTGCGACACGCTGGTCATGAGGAGCC--
-------CTGTACTTGGCCCACCTTGTCATGTGTCCAGTGTC-----GCCAGAGTCGGCCTGATTCATGGCCCAGCAAAG
GGTGTCGACTGACATAGCGCCCTTCGCTGGGTAAGGAATCAGCGACTTCAACTCCTCCGTCGTCGCCTTCTTCACCACAG
CATCTGCCTCTTTGTGCATGTCTTTGATGCTGCTGAAGTTCGAGCACACTTCCATGGTGTTCTAGAACTTGGTGCGGTCA
CCGAGCGAGCACCCGGGGAAGAAAGCCTTCCATCCAATGCCTCAAGGGAAGGGGTTGGGTTGGA----------------
------------------------------------------------------------GTTGGAGTTCATGGTGATGG
ATAGGAGGAAGAGTGATAGACAGAGAAGAGAGAGGGTTAACTGAGTGCGGTTGTGGGTAAGTAGTGATGGTCAGGGTGGG
TAAATATAGGGGCTTTGGACGGTAGCTTTTAATGCCGATCAACTTT--------------------------TGAACTTT
GTGCTCTTCATAACGCCATGAACTTT-CTGTTGTTCATAATGC--------------------------AGATCAAGTCG
GAAAACAAT------------------------GACAAGGGCAAGGAGGTGGTGCTGCCTATG-----------------
-------------GAG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr5B_33
--------------------------------TGGCCTTATTCTTGTCCTGCAACTGGACTACCGTCTCGTCATCCTCAC
TGGAGTACAAATCAATTGGCCAAGTATGGTGGCCTAGCTCTGGCGCCCTGACAACCTATTCCACCGCTTCTTCTTCTTCC
TCCGGCTCCAAACCGATGACCAACCGCACCACCAAATTCCTATTCCGATACGCTGTGACACACTGGTCATGAGGAGCCAT
GTACTCCCTGTACTTGGCCCACCTTGCCCTCTGTCCAGTGTCACTGGAATCGA-----CCTGATTCATGGCCCAACGAAG
GATGTCGGCTGACATAACACCCTTCACTGGGTCAGGAATCAACGTCTTCAACTCCTTTGCCGTCACTTTCTTCACCACAA
CGTCTGCCTCCTTGTGCATGTCTGCGATGCTGTTGAAGTTCGAGCACAC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TT--CCATGGTGTTCTCGAACTTGATGCGGTTT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GCGAGCGAGCAC-CCAAGGAAGAAAGCCCTCCATCCAAT-----
-----------------------------------------------------------------------GGCCCAAGG
GAAGGGGTTGGGGTTGGGGTTGG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr1D_600
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GTTGGAGTTCATGGCGGTGG
ATAGGAGGAAGAGTGATAAAT-------AGAGAGGGTTAACTGAGTGCGGTTGTAGGTAAGTAGTGAACATCGGGTTGGG
TAAATATAGGGGCTTTGGACGATAGGTTTTAATGCCAATCAACCTT--------------------------TGAACTCT
GCGCTCTTCATAACACCATGAACTTT-GTTTTGTTCATAACAC--------------------------AAATCAAGACG
GGGA------------------------------ACAAGGGTAATGAGGTGGTGCCGCAATTG-----------------
-------------GAGGTCTGGTCGCACACGGCCGAGGACGTGCCGCCCACGATCGACGAC--ATGGTGCTGGAGGAGCC
CCCTAGCGACAAGGGCCA--AGACTATGGGCACTACCATGAGAAGGGTGGGACAACTCAC-TTCTGCAAGGTGATCCTTG
CCCCGAATCTTGA-CTGCATACTAATTTCCCTAGACTTCACCAAGCACTCCCCGGCCATGCCGACAGAATTCAAGATGAA
GACAGACA-CGACTGCTCATGGAGGGTCATTGTGAGGCTGATGAACGGTAG--GGTCACCCTCGATCATGGTTAGGCCAC
CTTCGCCGCCGTCCATCAAATCAAGATCGGG-G--ACATGATGACCTTCAAGTTGCTGACTCCCGACACGCTCAAAGTCC
TCATCTTCA---ACAACGACGACATTGAAGTGGTGACCAAGTGCGGGATGCACAACAACGCCTTCGTCGTGAATATCTAG
GACATCTCTCCGTTGCTCCAGCTGGCTTAGGATCGACTATGGCGTACTACTTTGCTTG--AAACTGCTATGTTTAAGTCT
GGTATTATCTTTAAAACCGCTTTCT----ATGGTTTAGAACTGTGTTAATATGCTATCTTT-TTTGTGTC-TTTGGGTTG
TTCTACATGCCT-TGTGTGCTGGTAACCTCACCACCTCGCCGAAGAGGTTACCAGACAACAGGC-------GTTGCATGG
AACCAAACACCATGC----CTTGTGCTTCCACCTAAACAAGCGGACAA-CCAAAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr1D_600
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GTTGGAGTTCATATCGATGG
ATGGGAGGAAGAGTGGT---------------AGGGTTAACTGAGTATGGTTGTGGGTAAGTAGTGATCGCCAGGGTGCG
TACATGCAGGAGCTTTGGATGGTAGGTTTTAATGCCGATCAACCTT--------------------------TGAACTTT
GTGCTCTTCATAACGCCATGAACTCT-GTGTTGTTCATAACAT--------------------------AGATCGAGACG
GAGAACAAT------------------------GACAAGGGCAAGGAGGTGGTGCCGCACATG-----------------
-------------GAGGCCATGCCAACCACGCCTGAGGAGGTGCCGAGCACGAACTATGAT--GTGGTGCCAGAGGAGCA
CCACAGTGGCAAA-GCACCAGAACTATGAGCACTACCATGAGGAGGGCGGGCCAACACAC-TTC--------------TG
CCCCGAAGCTTGA-GTGCATTCCAATGCCCCTAGACTTCACCAAGCACTTCTCGCCTGTGCCAACGGAGTTCAAGCTCAA
GACGAACACCGGCTGCTCATGGAGGGTCACGATGAGGCTGATGAACGGTAG--GGTCACCCTCGATCAGGGTTGGGCCAC
CTTCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr4A_600
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GTTGGAGTTCATGGCAATGG
ATAGGAGGAAGAGTGAGAGAC-------AGAGAGATTTAGCTGAGTGCGGTTGTGGGTAAGTACTGAACGTCAAGCTGTG
TAAATATAGGGGCTTCGGACGATAGGTTTTAATGACGATCAACCTTTTAAGTTTGTGCTCTTCATAACGTCATGAACTTT
GCGCTGTTCATAACGCCATGAACTTT-GTGCCTTTCATAACGC--------------------------AGATTGAGAAG
GAGA------------------------------ACAAGGGCAAGGAGGTGGTACTGCCCATGAACAAGGGCAAGTAGGT
GGTTGATCCCTTGGGGGTGGTGTCGCACATGACCGAGGAGGTGCCGCCCATG---GATGAC--ATCGTGGTGGAAGAGCC
CCGTAGCGGCAAGCGCCG--GAACTACGAGCACTACCATGAGGAGGGTGGGCCAACTCAC-TTATGCAAGCTCATCCTTG
CCCCGAAGCTCGA-GTGCATACCAAGGCCCCTAGACTTCACCAAGCACTTCCCAGCCGTGCCAACGGAGTTCAAACTCAA
GATGAACACCGACTGCTCATGGAGGGTCACTATGAGGCTGATGAACGACAG--GGTCACCCTCAATCAGGGTTGGGCCAC
CTTTGCCGACGTCCATCAGATCAAGATCGAG-T--ACATGATGACCTTCAAGTTGTTGACTCCCGACACGCTTAAGGTGA
TTGTATTCA---ACAATGGCGGCATTGAAGTGGTGACCAAGTGTGGGAGGCACGACGACACCTTCACCGTGAACGCCTAG
AACAGTTCTCCGTTGCTCCAGCTGGTTTAGTATCGACTATGGCATACTGCTTTGCTTG-AAAATTGCTATGTTTAAGTGT
GATACTATGTTTAAAACTGCTTGCT----GTGGTTTAGAACTGTGTTAATATGCTATCTTT-TGTGTGTC-TTTGGGTTT
TTCTACACGCCCCTGTGTGCTGGTAACCTCACCACCTCGCCGAAGAGGTTACCAGACAACAGGC-------GTTGCATGA
AACCAAACACCATGCATGCCTTGTGTTTCTGCCTAAACAAGCGGGCAA-CCAAAT-AGACCACCTTTCATCACACCCCAC
GCAGGC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr5A_600
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GTTGGAGTTCATGTCGATGG
ATAGGAGGAAGAGTGAGAGAC-------AAAGAGGGTTAAATGAGTGCGGTGGTGGGTAAGTAGTGACCGTCAGGCTGGG
TAAATATAGGGTCTTTCGATGATAGGTTTTAATGCCGATCAATCTT--------------------------CGAACTTT
GTGTTGTTCATAACACCATGAACTTT-GTGTTGTTCATAACGCCATGAAGTTTGTGCTCTTCATAACGCAGATCGAGACG
AAGA------------------------------CGAGGGCAAAGGAAGTGGTTCCGCCCTTG-----------------
-------------GAGATTATGCCAACCAGGCCTAAGGAGGTGTCGCCCACA---GATGACGAGTGGTGCTGGAGGAGCC
CCCGAGCGGCAAG-GCCG--GAACTACATGCACTACCATGAGGAGGGTGGACCAACTCAC-TTCCGGAAGGTGATCCTTG
CCCCGAAGCTCGA-GTGCATACCAATGCCCCTAGATTTCACCAAGCACTTCCCGGACGTGCCGGCGAAGTTCAAGCTGAA
AACGAACACCAGCTGCTCATGGAGGGTCACCGTGAGGCT-ATGAATGGCAG--GGTCACCCTTGACCAGGGTTGGACCAC
CTTCGCCGCCGACCATCAGATTAAGATTGGG-T--ACATAGTGACCTTCAAGTTGCTGACTCCCAACACGCTCAAGGTCA
TCGTCTTCA---ACGATGACGACATTGAAGTGGTGACCAAGTGCGGGCGGCACGACGACGCCTTCGCCGCGAACGTCTAG
GATAACTCTCAGTTGCTCCAGCTGGTGTAGTGTCGACTATGGTGTACTGCTTTGCTTA-AGAGCTGTTGTGTTTATGTGT
GGTGCTATGTTTAAAACTGCTTCCT----ATGGTTCAGAACTTTGTTATTATGCTATCTTT-TGTGTGTC-TTTGGGTTC
TTCTACACGCCCCAGTGTGCTCGTAACCTCACCACTTCACCAAAGAGGTTACTAGACAGCAAGC-------GTTGCATGA
AACCAAACACCATGT----CTTGTGTTTTCGTGCAAGCAAGTGGGTAA-CCAAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr2B_623
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GGAAGAGGAGTGAGAGAC-------AGAGAGGGTTAACTGAGTGCGTTTTTGGGTAAGTACTGACCGCTAGGCTGGG
TAAATATAGGGGCTTTGGATGATAGGTTTTAATGTCGATCAACCTT--------------------------TGAACTCT
GCTCTCTTCATAACACCATGAACTTT-GTGATGTTCATAACGT--------------------------AGATCGAGATG
GAGAACACGGACAAGGAGGTGGTGCTGACCATGGACAAGGGCTAGGAAGTGGTGCCGCACA-------------------
--------------------------------CCGCCGAGGTGCCGCCCATGGACGACGAT--GTCGTGGTAGAGGAGCC
CCCCAGCGGCAAGCGCCG--GAACTACGGGTACTACCATGAGGAGGGTAGGCCAACTCAC-TTCTGCAAGGTGATCCTTG
CCCCGAAGCTCAA-GTGCATACCAATGCCCCTAGACTTCATGAACCACTTCCTACTCATGCCGACGGAGTTCAAGCTGAA
GACGAACATCGGCTGCTCATGGAGGGTCACTTTGAAGCTAATGAACGGTAGAGGGTCACCCTCGATTAGTGTTGGT-CAC
CTTTGCCGCCGTCCATCAGATCAAGATCAGG-T--ACACGGTGACCTTCAAGTTGTTGACTCCCTACACACTAAAGGTCA
TCGTCTTCA---ATGACGACGACATTGAAGTGGTGACCAAGTGCAGGAGGCACGATGACGCCTTCGCAGTGAACGTCTAG
GACAACTCTTCGTTCCTCCCGCTGGTTTAGTATTGACTATGTTGTACTGCTTTGCTTGTAA-ATTTCTTTGTTTAAGTGT
GGTACTATGTTTAAAATTGTTTACT----TTGGTTTAGAACTGTGTTAATATGCTATCTATGTGTATGTC-TTTGGGTTG
TTCTACATGCCCCTGTTTGCTGGTAACCTCACCACCTCGTCGAAGAGGTTGCCAGACAACATGTGTTGCATGTTGCATGA
AAACAAACACCATGC----CTTGTGTTTCCGCCTAAACAAGTGTACAA-C------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr1A_776
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTCATAACAC--------------------------AGATCAAGACG
GGGA------------------------------ACAAGGGTAATGAGATGGTGCCGCCATTG-----------------
-------------GAGGTGTGGCCACACACGGCCTATGATGTGCCACCCATGGATGACGAC--ATGGTGCTAGAGGAGCC
CCCAAGCGGCAAGGGCTG--GAACTATGGGCACTACCATGAGAAGGATGGGGAAACTCAC-TTATGCAAGGTGATCCTTG
CCCTAAAGATCGA-GTGCATACTGATTTCCCTAGACTTCACCAAGCACTTCCCAGCCATGCTGACGGAGTTCAAGATGAA
GACGGACACCAACTGCTCATGGAGGGTCACTGTGAGGCTGATGAACGGTAG--GGGCACCCTCAATCAGGGTTGGGCCAC
CTTCACAATCGTCCAATAAATCAAGATCAGG-G--ACATGATGACCTTCAAGTTGCTAACTCCCAACACGCTCAAGGTCC
TCATCTTCA---ACGACGACGACATTGAAGTGGTGACCAAGTGCGGGAGGCATGACAATGCCTTCGTCGTGAACTTCTAG
GACAGCTCTCCGTTGCTCTGGCTGGTTTAGGGTCGACTATGGCGTACTGCTTTGCTTG-AA-ACTGCTATGTTTAAGTGT
GGTACTATGTTTAAAATGACTTCCT----ATGGTTTAGAACTGTGTTAATATGCTATCTTT-TCTGTGTC-TTTTGGTTG
TTCTACACGCCT-TGTCTGCTCGTAACTTCACCGCCTCGCTAAAGAGGTTACTAGACAACGGTC-------TTTGCATGG
AACCAAACACCATGC----CTTGTGCTTCCACCTAAACAAGA--ACAA-CCAAAC-AATCCACCTTTCACTATGCCCCGG
GCAGGC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr1D_806
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GAGAAGGGCAAGGAGGTGGTGCCGCCCTCG-----------------
-------------GAGCTTGTGCCAACCACGCTCGAGGAGGTGCCGGGCATGGACAACGAC--GCAGTAACGGAAGAGCC
CCCTAGTGGCAAGCGCTG--GAGCTACGGGCACTACCATGAGGAGGGTGGGCCAACACAC-TTCTGCAAGGTCATCCTTG
CCCTGAATCTCGA-GTGCATTCCAATGCCCTTAGACTTCACCAAGCACTTCCCGGCCGTGCCGACGGAGTTCAAGCTCAA
GACGAACACCGGCTGCTCATGGAGGGTCACTGTGAGGCTGACGAACAGTAG--GGCCACCCTCGATCAGGGTTGGGCCAC
CTTCGCCACCGTCCATCAGATCAAGATCGGG-T--ACATGGTGACCTTCAAGTTGTTGACCCCCGACACGCTCAAGGTCA
TCGTCTTCA---ATGACGACGACATTGAAGTGGTGACCAAGTGCGGGAGGCACGACGAGGCCTTCGATGTGAACGTATAG
GACAGCTCTCCGTTGCTCCAACTGGTTTAGTATCGACTATATTGTACTGCTTTGTTTGAAA-ACTACTATGTTTAAGTGT
CATACTATGTTTAGAACTGCTTGCT----ATGGTTTAGAATTATGTT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr4A_806
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GACAAGGGCAAGGAGGTGGTGCCGCTCTTG-----------------
-------------GAGGTTGTGCCAGCCACGCCCGAGGAGATGCTGCCCACAGACGATGAT--GTGGTGTCGGAGGAGCG
CCCAAGTGGCAAGCGCCG--GAACTACGAGCAGTACCATGAGGAAGGTGGGCCAACTCACATTCTGCAAGACGATCCTTG
TGCCGAAGCTCGA-GTGCATACCAATGCCTCTAGACTTCACCAAGCACTTCCTAGCCGTGGCGATGGAGTTCGAGCTGAA
GACGAACAACAGCTGCTCATGGAGGGTCACTGTGAGGCTGATGAATGGCAG--GATCACCCTCGATCATGATTGGGCCAC
CTTCATTGTCGTCCATCAAATCAAGATCGGG-T--ATGTGGTGGCCTTCAAGTTACTGACTCTCTACGCACTCAAGGTCA
TCGTCTCCA---ACGACGACGGCATTGAAGTGGTGACCAAGTGTGGAAGGCACGATGACGCCTTCGCCGTGAATGTCTAG
GACAGCTCTCCGTTGCTCCAGCTGGTTTAGTATCGACTATATCGTACTACTTTGCTTGAAA-ACTGCTATGTTTAAGTGT
GGTACTATGTTAAAAACTATTTGCT----ATGGTTTAGAACTGTGTTAATATGTTATCTCT-TGTGTGTCTTTTGGGTTG
TTCTACACGCCCCTGTGTGCTAGTAACCTCACCACCTCGCCGAAGAGGTTACCAGACAACAAGT-------GTTGCATGA
AACCAAACACCATGC----CTTGTATTTCAGCCTAAACAAGCGGGCAA-CCAAAT-AGGCCACCTTTCATT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr5D_837
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AGGTGGTGCCCCTCACGGCCTAGGAGGTGCCGCCCACAGGCTACGAG--GTCATGGTGGAGGAG-C
CCCTAGCGGCAAGCGCCG--GAACTACAAGCACTACCATGAGGAGGGTGGGCCGACTCAC-TTCTCCAAGGTGATCCTTG
CGCCGAAGCTCGAGGTGCATACCAATGCACCTAGACTTCAC-AAGCACTTCCCAGCCGCGCCGAGGGAGTTCAAGCTCAA
GATGAACACCGGCTGCTCAGGCAGGGTCACTGTGAGGCTGATGAACGGTAG--GGTCACCCT-GATCAGGGTTGGGCCAC
CTTCGCCGCCGTCCATCAGATCAAGATGAGG-TACATATGGTGACCTTCAAGTTGCTGACTCCCGACACGCTCAAGGTCA
TCGTCTTCA---ACGGCGACGGCATTGAAGTGGTCACAAAGTGCGAGAGGCATGACGACGCCTTCATCATGAATGTCTAG
GACAGCTCTCCGTTGCTCCAGCTGGTTTCGTATGGACTATATCGTATTGCTTTGCTTGAAA-ACTGCTATGTTTAAGTGT
GGTGCTATGTTTAAAACTGCTTGTT----ATGGTTTAGAACTATGTTAATATGCTATCTTT-CGTGTGTC-ATGGGGTTG
TTCTACACACCCCTGTATGCTGGTAACCTCACCACCTCGCTGAAAAGGTTACGAGACAACAGAC-------GTTGCATGA
AACCAAACACCATGC----CTTGTGTTTCCTCCTAAACAAGCGGGCAA-CCAAAC-ATGCCACGTTTCGTTATGCCCCAT
GCAGGCTAGAGGGTATGCAGACAAACAAACAACACACATGTGTTGGTTCTTTGCCTATTTTCCCTAAGTCAGGCCCAACT
GAGAAGTGTATACTATGCAGGCAAAGGTTGCTACGAGAACCAAACACGCCCT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3D_988
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CGA-GTGCATACCAATGCCCCTAGACTTCACCAAGCACTTCCTCGTCGTGACAACAGTGCTCAAGCTGAA
GATGAACACAGGTTGCTCATGGAGGGTCACTATGAGACTGATGAACGACAT--GGTCACCCTCGATCAGGGTTGGGCCAC
CTTCGTCGTCGTCTATCAGATCAAGATCGGGTT--ACATGGTGACCTTCAAGTTGCTGACTCCCGACACGCTCAAGGTCG
TCATCTTCG---AAGACGACAGCATTGAAGTGGTGACCAAGTGTGCGAGACACGACGACGCCTTCGCCATGAACGGCTAG
GACAGCTCTCCGTTGCTCCAGCTGGTTTAGTATCGATTATATCATACTACTTTGCTTGAAA-ACCGCTATGTTTAAGCAT
GGTACTATGTTTAAAACTATTTGCT----ATGGTTTAGAACTATGTTAATATGCTATCTTT-TGTGTGTC-TTCGGGTTG
TTCTACACGCCCACGTGTCCTGGTAATCTCACCGCCTCACTGAAGAGGTTACGCGT---------------------TGC
AACCAAACACCATGC----CTTGTATTTCCGCCTAAGCAAGTGGCCAGCCAAACC-ATGCTGCCTTTCATTGCGCCTCAT
CCAGGCTAGAGGGTATGCAGACAACCAAACTAGATGCAGATGTTGGTTTTTGTT-TGTTTTCTCTCAGCCAGTCCCAACT
GGGAAGTGTATACTATGCAGACAACTTTTGCTACGAGACCCAGACACGCCCTTTGTCTCAGCTGGCAACAACGCCATGCA
GCGCACCGCCACAACCTATCCCTATTTCTGTTCATACGAACACAGTATAAATGAATACACATACTCATCTACCGCAATGT
CAAAAAAAATGTCACCGCTCATCTACCGTCACAGAAATCTGTCAGGATACAAACCACACCCGAAAATTACATACATGACC
ATGTGATGGATTTGTTTAACGCAAGCGTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr4D_1144
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCCATCAGATCAAGATCGGG-T--ACGTGGTGGCCTTCAAGTTACTGACGCCCTACGCGCTCAATGTCA
TCGTCTCCAACGACGACGACGACGTTGAAGTGGTGACCAAGTGCGGAAGGCACGATGACGCCTTTGCCGTGAATGTCTAG
GACAACTCTCTGTTTCTCCAGCAGGTTTAGTATCGACTATATCATACTACTTTGCTTGAAA-ATTGCTATGTTTAAGTGT
GGAACTATGTTAAAAACTGCTCGCTATGCATGGTTTAGAACTGTGTTAATATGCTATCTCT-TGTGTGTC-TTTGGGTTG
TTCTACACGCCCCTGTGTGCTGGTAACCTCTCCACCTCGCCGAAGAGGTTACCAGACAAAAAGC-------GTTGCATGA
AACCAAACACCATGC----CTTGTATTTCCGCCTAAACAAGCGGGCAA-CCAAAC-ATGCCACCTTTCATTACGCCTCAC
GTAGGCTAGAGGGTATGCACGCAAACAAACAACACGCAGATGTTGGTTTTTTACCTGTTTCCCCTCAGCAAGGCCCAACT
GGGTAAAGCATGCAATGCAGGCATAAGTTGCTACGAGAACCAAACACACCCT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>SNPs
SS----S----S---------SS----------------------------S--------------S-------------
-S-------S----------------S-S----S------S-S--------S---------------------S------
---------------------------------------------SS----------S-------S--------------
--------------------------------S-----S-S---------------------------------------
--------------------------S-------------S-----------------S---------------------
S---------S--------------------S--------------------S----------SS---------------
--S------------S-----------S-------------S-----------------S-SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------S-----
---------------------------------S-SSS------------------------------------------
-------S-----------------------S--S---------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------S-----------
----------------------------S-------S----------------------------------S---S----
--------------------------------------------------------------------------------
----------S-------------------------------------------------------S-------------
--------------------------------------------------------------------------------
----------------------S--------------------------------------------------------S
--------------------------------------------------------------------------------
-------S---------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--S----------------------------------------------------S------------------------
------------------------S-------S-----------------------------------------------
-------------------------S-S--------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_555
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TGGGGTTAGGGCTGGACATA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_2312
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TGATCATTC
TGGCTCCTGCG---------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
