>input_sequence_84807
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--------------------------------------------ATGGCGCGGTTCCGGTTGCACTGGCTGGAGGCCATG
CTGCCGCTGGGCATCATCGGCGGCTTCCTCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAG
GGTA---CC-CTCCCTTCCCCCA--TCTCTCTCTCCCCCGAATCCCGATCCGAATCTCTCTC-------GTGCTGAGGCT
TGCGCGTGGTTTGTTGGATGCAGCCGAAGCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAG
CTCGTCGACAAGCCCGCCGCCAACTAG-----------------------------------------------------
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>chr1A_1_TraesCS1A01G302900
TTACGGGATGCGTTTGCGAGCTCTGTTTGGCCGGAGCGCTAGCTGCACCGTAGAAACAATTCGTAGGAGTCCTCATACTT
GTTTTGTGGGACGCGGGGTTTACCGGATCCGCTAGAGATGCTCTCAATGGTTTTTCGGTTTTTCTTTAGGGGAAGAAAGC
CACTCAACGGTGATGTATAACTTGTGGGCAGTGACGTGAAGGTCAGCCTCGTACTACTAAAATGAGCAGAAA---AAAC-
-CTACTACAGGATCCCGCGAGGGCATACGGAAGATACGCTTGCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGG
AAAGGGCTCCCGGCCCGAGACAAAAGCGCCATCTCCATCCATCTCGCACGTCCCCGCCCGGCCTAGCTTTCCATGCTCGC
TCTTGCTTCGTGCAAAGCAGCAATATTTTGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCCCTCT
TCCTCCTTTTTCCATGATCCCGTTTAGTGTAAAAAAGAACACTGGAGTAGTGGAGTGGTTCCAAGTTCCAACTTGCAGCC
CTTCCGGGATTCCATGAGCTGATGAGCACGACCAACGCACCTCCCAAACTCCAGTTAGCATTTTTTGGAGTGGCCAACAA
CATTTTATACAAATTCTA---------------------------------------TTATATAATTATTTCATATTTTA
TA----------TATGAAAATATTTACATTTTCGTAGCGGAAAACACATTCATATTTC--------------------TC
TTCTATGACGCCATTAGCCCAAACCCATTTTCAATTGGATAAGACC----------------------------------
----------------------------CCCATTTTCGTAAAGAAAAAAAAACTCGGTCAAGGATCCAGTTTCTGGACCG
CCGAAGCCGGAAAGCCCGGCCCATGCAACCGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCTGCCCATTC----
---------------CCCACCCGCAACCGCTGGAGAGCTCGCGAATCTGCTCCTCGTCGCCGT---------CCCTGCCC
GCCCCGATCCGTCCGCCGTCCGCCGTCTCCCCGTCCGGCTCCCGATGGCGCGGTTCCGGTTGCACTGGCTGGAGGCCATG
CTGCCGCTGGGCATCATCGGCGGCTTCCTCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAG
GGTA---CC-CTCCCTTCCCCCA--TCTCTCTCTCCCCCGAATCCCGATCCGAATCTCTCTC-------GTGCTGAGGCT
TGCGCGTGGTTTGTTGGATGCAGCCGAAGCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAG
CTCGTCGACAAGCCCGCCGCCAACTAGGTGCGGATCTGATCCCACGCCTTCTGAATCTCCTGCCGGTGGC----------
------CCCTATCAGGTTTCTGGGGGCCTGGCTCTGACGTGAAATTCTAGGGTTTGGGCTGGTGTTAAGTTAGAGTAGTT
CCCTTC-TGTTGTTGGATACGAGGTGTTTATGTGGGGGGTTACAAATTGGG-----------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------AGTGCCTGGTGGGAATTTG
CGCATTTCTCCGTAGCTGGGTTGCCCTGTTTGATTGGTAGTGCGTTGCAGATCACTGGAGACTTCGTGATACTTGATTGT
CATGTTTGGCTGTTATGCTTTGACTGAATTGGATTGCAGTGTGCTAGACTTGTAC--------TGAATTTCTGATTTAGT
TGTTACTC----GTAGCCCCATTTTCGCTATCAAAGTGATGGTGCAGCTTGGGGTCTTGTGGTATTTGAATGTAAGGCTA
GTTTAGAAGATGATAGAGCAC-------------GCAATGAGGTAAATGCCAACTGGTTGGGTCTTT-GAGGTGGGAGAA
GTGTTACTTCGGGGTTGGCAGCGCTTCCTCTGGTCGTCTTCTCAAGTCATCGCAGTGGAAAATAAAAACTGACTACTTCT
GTTTCACAGCTTGCTTTGCCTAGTCTTTTGAAGAATGGTGATCTAGGAACTA-CATTTATCTAAGTAGT-CTCTCTCCAG
TCTCCTGTGAATACATGTAGGCTGGCCCCAGAATGGAAACCATGATTGTTTTTACACCCTCTAGCAGACTTGCAACGTGA
TCTTCATGTTACATTGTTCCCTA-TTTTCCTTTCATTATCTTGTGATTGCCCGGTCCATTCTTGTCTTCCTCAATTGTAT
TATCCTTCCCGTGCATTCGATCACTTCATGAATAACATTAGCATTGATGATAATTCTTTGTTTTAACTGTTTACCACTTC
ACATTGGCATTGTTTGAGCAATACTCTTAAAAATGTAGTTGGATTCATCTGAAGCAATTTTGCCTTCGTTTTCCCGTTGC
CTTACTACCAACAACCGCTATTGATATCACACTGCTCACCACA
>chr1D_218
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---------------------------------------------------------TAAAATGAGGAGAAA---AAACT
ACTACTACAGGATCCCGCGATGGCATACCGAAGATAC----GCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGA
AAAGGGCTCCCGGCCCGAGACAAAGGCGCCATCTCCATCCATCTCGCACGTCCCCGCCCGGTCTAGCTTTCCATGCTCGC
TCTTGCTTCGTGCAAAGTAGCAATATTTTGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCTCCCC
TCCTCCTTTTCCCATGATCCTGTTTAGTGTAAA--AGAACACTGGAGTAGTGGAGTAGTTCCAAGTTCCAACTTGTAGCC
CTTCCGGGATTCCATGAGCTGATGAGCACGACCATCGCA-CTGCCCAACTCCAGTTGACATTCTTGGGAGTGGGCGTCAA
CATTACATACAAATTGTA--------------------------------------CTTGTAGGATTATCTTCATAACTT
TTAGTGTGAAATTATGAAAACACTTAAGATTTTTTAGCCGAAAACATATTCAGATTTTTTTGAGGAGTATTCAGATTTTC
TTCTGTGACG-----------------------------------------CCATTTTCAATTGGAGGAAACCCTGACCC
ATTCGTAA---------------------------TCGTAAAGAAAAAAAAACACGGTCAAGGATCCAATTTCTGGACCG
CCGTAGCCGGAAAGCCCGGCCCATGCAACCGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCCGCCCGTTC----
---------------CCCACCCGGAACCGCTGGAGAGCTCGCGAATCTGCTCGTCGTCGCCATCCCCGCCCGCCCCGAT-
---------------CCGTCCGCCGTCTCCCCGTCCGGCTCCCGATGGCGAGGTTCCGGTTGCACTGGCTGGAGGCCATG
CTGCCGCTGGGCATCATCGGCGGCTTCCTCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAG
GGTAACGCCGCTCCCTTTCCCCATTTCC--CTCTCCCCCGAATCCCGATCCGAATCTCTCTC-------GTGCTGAGGCG
GGCGTGTGGTTTGTTGGATGCAGCCGAAGCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAG
CTCGTCGACAAGCCCGCCGCCAACTAGGTGCGGATCCGATCCCA----------------TGCCGCCGCT----------
------CCCTCTTGGGTTTCTGGGGTCTCGGCTCTGTGATGAACTTCTAGGGTTTGGACCGCTGTTGGGTTAGAATAGAT
CCCTCTTTGTTGTTGGGTACGAGGTGTTTTTGTGGGGGGTTACTAATTGGG-----------------------------
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-------------------------------------------------------------AGTGTCTGCTGGGAATTTG
CGCATTTCTCCGCAGCTGGATTGCCATGTTTGATTGGTAGTGCGTTGCAGACCACTGGAGACTTCGGGATACTTGATTGT
CATGTTTGGCTGTTATGCTTCGACTGAATTGGATTGCAGTGTGCTAGACTTGTACAATTGTACTGGATTTCTGATTTGGT
TGTTACTCTATGGTAGCCCCATTTTCGCTATCAAATTGATGGTACAGCTTGGGTTCTTGCGGTATTTGAATGTAAGACTA
GTTTAGAAAATGGCAGAGCGCGCTCAGCTCTTTTGCAATGAGGTAAATGCCATCTGGTTGGGTCTTTTGAGGTGGGAGAA
GTGATACTTCGGGTCTGGCAGCGCTTCCTCTGGTCGTGTTATCCAGTCATCGCAGTGGAAAAGAAAAACTGACTACTTCT
GTTTCACAGCTTGCTTTGCCTAGTCTTCTGAAGAATGTTGATCTAGGAACTA-CATTTATCTAAGTAGA---CTCTCCAA
TCTCCTGTGAATACCTGTAGGCTGGCCCCAGAATGGAAACCATGATTGTTTTTACACCCTCTAGCAGACTTGCAACGTGA
TCTTCATGTTACATTGTTCCCCA-TTTTCCTTTCATTATCTTGTGATTGCCCGGTCTATTCTTGTCTTCCTCAATAGTAT
TATCCTTCCCGTGCATCCGTTCACTTCATGAATAACATTAGCATTCATGATAATTCTTTGTTTTAACTGTTTACCACTTC
ACATCGGCATCGTTTGAACAATATTCTTAAAAATGTAGTTGGATTCATCTGAAACAATTTTGCCTTCCTTTTCCCGTTGC
CTTCCTACAAACAACTGCTATTGACATCACACTGCTCACCACA
>chr1B_219
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----------------------------------------------------------AAAATAAGCAGAAAAAGAAACT
ACTACTACAGGATCCCGCGAGGGCATACGGAAGATAC----GCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGG
AAAGGGCTCCCGGCCCGAGACAAAAGCGCCATCTCCATCCGTCTCGCACGTCCCCGCCCGGTCTAGCTTTCCATGCTCGC
TCTTGCTTCGTGCAAAGCAGCAATATTTTGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCACCCC
TCCTCC-TTTTCCATGATCCTGTTTAGTGTAAA--AGAACGCTGGAGTAGTGGAGTGGTTCCAAGTTCCAACTTGCAACC
CTTCCGGGATTCCATGAGCTGATGAGCACGACCACCGCA-CTGCCCAACTCCAGTTGACATTCTACGGAGTGGCCAACAA
CATTTTGCATAAAATTGTATTTCCTCCGTAAACTAATATAAGGGCATTTAGATCCTCTTGTATGATTATTTTCATAGCTT
TTAGTGTGAAATTATTAAAATATTTAGATTTTTTTAGCGGAAAACACATTCATATTTCCC--------------------
-TCTATGACGCCATTAGCCCCAACCCATTTCCAACTGAAGGAAACCCTGACCCATTTTCAACTGAAGAAAACCCTGACCC
ATTTTCATTCGCAAAAAAGAAACCCTTACCCGTTTTCGTAA--AAAAAAAAACTCGGTCAAGGATCCAATTTCTGGTTCG
CCGAAGCCGGAAAGCCCGGCCCACGCAACTGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCCGCCCGTTCGCCG
TCGCGACCTCAGTTCCCCACCCGCAACCGCTAGATAGCTCGCGAATCTGCTCCTCGTCGCCGT---------CCCCGAT-
---------------CCGTCCGTCGTCTCCCCGTACGGCCCCCGATGGCGAGGTTCCGGTTCCACTGGCTGGAGGCCATG
CTGCCGCTGGGCATCATCGGCGGCTTCCTCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAG
GGTA---CCGCTCCCTTTCCCCATTTCTCTCTCTCCCCCGAATCCCGATCCGAGTCTCTCTCTCTTCTCGTTCTGACGCG
GGCGTGTGGTTCGTTGGATGCAGCCGAAGCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAG
CTCGTCGACAAGCCCGCCGCCAACTAGGTGCGGATCTGATCCCA----------------TGCCTCCTGCATCTTCTGCC
GGCGGCCCCTCTTGGGTTTCTGGGTGCTTGGCTCTGAGACGAAATTCTAGGGTTTGGTCTGGTGTTAAGTTTGAATAGTT
CCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTCTGGTGTGAATTTG
CGCATTTATCCGTAGCTGGATTGTCATG-TTGATTGTTAGTGCGTTGCAGATCACTGGAGACTTTTCTGATGCTGCTGCG
CT------GCTGTTATGC-TTGACAGAATTGGATTGCAATGTGCTAGACTTGTAC--------TGAATTTCTGATTTGGT
TGGTACTGTATGGTAGCCCCATTTGCCCTGTCGAACTGATGGTACAGCTCGGGTT-TTGCGTCATTTGAATGTAAGGCTA
GTTTAGAAAATAGTATAGCACAGTGAGCTCCTTTGCAATGAGGTAAATGTCATCTGATTGGGTCT-TTGAGGTGGGAGAA
GTGGTACTTCGGGCTTGGCAGAGCTTCCTCTGGCCGTGTTCTCCAGTCGTCACAGTAGAGAATT-AAACTGACTGCTTCT
GTTTCCCAACTTGATTTATATAATTTTTTGAAGAATGTTGATCTAAGCAATTGCATTTATCTAAGTAGACCTCTCTCCAG
TCTCACGTGAATCCCTATTGGCTGGCCGAAGAATGGAAACCATGATTTGTTTACA--CCTCTAGCAGACTTCT-ACGTGG
CCTTAATGTCACATTGTTCCCTATTTTTCCTTTCATGATCTTGTTAATGCCCCATCCATTCTTGTTTCCCTCAATAGTAT
TGCCATTCCCATGCATCTGATCACTTAATGAATAACAGTAGCATTGATGATAGATCTTTGTTTAAACTGCTTACCACTTC
ACATCGCC-TTGTTTGAGCAATATTCTTAAAAATGCAGTTGGA-------------------------------------
-------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-------------------------------------SSSS---------------------------------------
-------------------------------------------------------------S------------------
---------------------------------------------------------------------------S-S-S
--------------------S------------SS---------------------------------------------
----------------------------------S----S--S--S----------SS----S--S--------------
---------------S-------------------------------------------S---S-------SSSSSSS-S
-S------------------------S-----SS----------------------------------------------
--------------------S---------S---S--S-SS-S-------------------------------------
-------------------------------S------------------------------------S-----------
-------------------------------------------------------------------S----S-------
---------------------------------------------------------------------------S-SSS
SSSSSSSSSSSSSSS-----------------------------------S-----------------------------
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-----------------S-------------------------------------------------------------S
S---S---------------------------------------------------------------------------
--------------------------------------------SSSSSSSSSSSSSSSS-----SS-------------
----------S-SS-------------S---------SS------------------S----------------S-----
-----S----------S------------S-------------S------------------------------------
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-----------------------------------------------------------------S--------------
-------------------S-----S----------------------------------------S-------------
-----------------------------------------------------------------------------S--
-----------------------------------S-------S---------S-----S--------------------
--------S---S---------------------------------------S---------------------------
---S---------S-----------------------S-----S------------------------------------
-------------------------------------S------------------------------S-----------
--------------S-----------------------------------------------------------------
---------------------------------------------------------------------------S----
----------------S---------------------------------------------------------------
----S------------------S-----------------------------S-------------S------------
---S----S------S--------S------------------
>forward_115
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---------------GGGTTTACCGGATCCGCTAG---------------------------------------------
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>reverse_1487
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----------------------------------------------CCTTCTGAATCTCCTGCCGG--------------
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