>input_sequence_84784
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-----------------------------------------------------------------ATGGCGTTCATGCGG
TACGACTACAGGGCGCTGCCGCAGGAGACGACGGTGGAGGAGTTCCGGGCGTGGCTGGCGCAGTTCGACGCGGACGGGGA
CGGGCGGATCAGCCGGGAGGAGCTGCGGGAGGCGCTGCGCAGCCTGGACCTGTGGTTCGCCTGGTGGAAGGCCAGGGAGG
CGCTGCGGGACGCCGACGCCAACCGCAACGGCCTCGTCGACGGCGACGAGATGGCCAGGCTCTACGCCTTCGCGCGCACC
AACCTCCACCTCAAGGCCGCCGACCTCGACGCCTAG--------------------------------------------
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>chr6D_1_TraesCS6D01G300800
TGCATGCCAACTAAACTTGACATCCTCGGTGAACACAACCTATCACGAAAAAACGCTCGATTTGTCAAGCCTAAAAATCT
GACGTTCGCTGAATATTCACGTCCTTACAACGGGATTTTCTTTTG---CAAGTAGTGCACGAT-----------GTCTTG
CAGCGCGATGGGCTTCCATGCCATTGGATTGCCAGCGGCCACCCGCTGGTTTCGCAATGGCTAGACAGCCGACGTCACAG
TCTTACGTGGTTCGGACGTCGCAC----ACTGGTACACATGGCGGTATCAACTTCCGATCGGCTGAAACTATTGACTGAC
GCTTACGCTTTACCTAATGGCTAAGCATTGACCGTATTTGTTGCTTCTCGGAAGGAAGCTTAGAGCAATATTAAAAAAAA
ATGAACAATATTAATTTTTGAA-GAAGTCCCATCTTATCTTCTAGACAAGATACAGAGAATGCTGATCAGGTTGGTCACG
ACTGACAATATGATATAACCCAGCACCTGGCTGGTGTGTCATCGCCG---------------------------------
-------------CATGAGTTCAACACGATCGCTCGGTGGACTAATCTCTTGTGATCTTTTTGCTTGGTGGACCA-----
----------AGCAATCGGG-----CACGAGCAACGCTACAACGCTACTACAGTATAGAATAATCACTGCATGCGTCCGC
AGCAAAAATGTAC---G-TGCCGTTGAAGTCAAAGGCATCCGATTCCAAGTTCTTGGAGGAAGCATCGGGCATGCACGGA
TGAAGTCACCAGGCTGCC-ATGTTCTTCGAGCAAGCATCGAATCTGATGATAGACTGGCCGGCTTTCGAAAAAGCAGCCG
ATATCTTTACCGATTGGCCTCGCCTAACAACGCATCAAACGTGCGCCGAAACGTGAGGCAACCGGAGTGCCCGCGAAAGC
ATGTAGACGTAGTTACCGCCATGGATCTCGGGTATATATAGATGGGCATCAACCGCGGGGACGGAGGAGCAAACACGTAC
GCACCGTCTGCGTGCGAGAGCAAAAAAACAGAGTAGA---------------AAGATCGAGGAGGATGGCGTTCATGCGG
TACGACTACAGGGCGCTGCCGCAGGAGACGACGGTGGAGGAGTTCCGGGCGTGGCTGGCGCAGTTCGACGCGGACGGGGA
CGGGCGGATCAGCCGGGAGGAGCTGCGGGAGGCGCTGCGCAGCCTGGACCTGTGGTTCGCCTGGTGGAAGGCCAGGGAGG
CGCTGCGGGACGCCGACGCCAACCGCAACGGCCTCGTCGACGGCGACGAGATGGCCAGGCTCTACGCCTTCGCGCGCACC
AACCTCCACCTCAAGGCCGCCGACCTCGACGCCTAGCCTAGCACT---------AGCAGCAGCCTCCCAATAATCTCTCT
CCGATCGGTCCATC----AGGCATCAGATACGTACGTACTCCTACTAGCTGGCTTGGATGCGATTGCTCGTGGATCGTGG
CTGGTTGATTG-----GTATTAGGTTGTAAATAATCAGTAAAGTGGATTTTGTATTGTGTGTGCTACTGGCTCTGGACCT
GTTTCTTTTTGTTCTCTCCTGCTTCAGAAGTTTCAGGGTCTCTAAAAAATGAACAGCTGACCCGATGCACGTGCCGGCAT
CCATCTTCAGTGATCAGAACCATATGATTCCTCAACTTGGAAACGTGGTCTGTGTGTAAATAATGATGTTTGGAGACGTT
GTCCGATC---GTTGCTACGTTGTTGTCTGCTGGACTTCCTGACGCATATGCACCAACAGCTCCTAATCGCTGCACAGCG
ACGGACAT----CGTGCCGCTGCACACAACTTGATAACATGGTTTT-TGTTTTCCTAAGGGAGCGACCTGATTATTTTTG
ACCAAGATCAACCGAACCAAGTATTTCAAATCG-AATGAACTGAAAAAGGACAAGAACAACGAA----------------
------------------------------------------------------AGAGTACCGATAAAACACGAAGTTAT
ATCGAAGTCATTCGAGAG-TGTCAACTCTAGCTCCGTTACTGAATACAGTTCCTGAAAAATGTAGAATACAAAACCTATG
CACTATGCTCAAAGATTTCAAAGAGGGATATGAGTCTCATACACAATAAGTGAGAACCTAAAATCATGCGATCCATCATG
GGCAGGACAGGACCCACCCGTAGTAAGGTCACATGTCTAGTGTCTACTATGTTATCACATGGTTGAGAAAAACTATCATG
AGCATGAAAGAGTGTAGACGTGAGAACAACTGCTTTTTTCGCGAATACGCAAGCTGCGTATCTTTGCATTGATAGAAGAA
GAGTTTACAGCAAGAGGTTACAACCACACGCAAGCCATGTACGCTAGAGGCATGATCGCGGGCGGTGGAGCAGACAGAAC
AAGGGGCTGCTAAT
>chr6A_6
-----GCCAACTAAGCTTGCCATCCTCGCCGAACACAACTTATCATG-AAAAACACTCGATTTGTCATGCCCAAGAATCT
GAGGTTCGATGAATATTCGGGTGCTTACAACTG-----AAAATATTCACAAGCAGTGCACGTTTGGAAAAAAGAATTGCC
-----------------------TTGGATTGCCAGTGGCCACCCGCTGGTTTGGCAATGGCGAGACAGCTGACGTCACAG
TGATACGTGGTTCGGACGTCGCAC----ACTGGTACACATGGCGGTATCAA------TCC-GCTGAAACTATCGACTGAC
GCTTACGCTTTACCTAATGGCTAAGCATTGACCGTACACGTTGCTTCTCGGAAGGAAGCTAATGC---------------
-----CAATATTAATTTTTGAACGAAGTCCCATCTTATCATCTAGAG-----ACGGAGAATGCTGATCAAGTTGGTCACG
ACTGATCAAGTCCTGG----------CTGG----TGTGTCATTGCCTCATGAGTTCTTTTTTTTCTTTTTTTCTTTTTTG
CGGGTGATTGCCTCATGAGTTCAACACTATTGCTTGGTGGACTAATCTCTCTTGATCCGTTTTGCTATCTGGAATGGAAT
GGACCACGCTAGCGATCGGG-----CACAAGCAACACTACAAC--------AGTATAGAATAATCACTGCATGCGTCCGC
AGCAAAAATGTATGTGCATGCCGTTGAAGTCAAAGGCATCCGATTCCAAGTTCTTGGAGGAAGCATCGGGCATGCACGGG
TGAAGTCACCAGGCTGCCAATGTTCTTCGAGCAAGCATCGAATCTGATGATAGACTGGCCGCCTGTCGAAAAAGCAGCCG
ATATCTTCGCCGATTGGCCCCGCCTAACAACGCATCAAACGTGCGCCGAAACGTGAGGCAACGGGAGTGCCCGTGAAAGC
ATGTAGACGTAGTTACCGCCATGGATCTCGGGTATATATAGCTCGGCATCAACCGCGGGGACGGAGGGGCGAACACGTAC
GCACTCTCTGTCTGAGGGAGCAAACCATTGTACGCACAGAGAGAAAGAAAGGAAGATCGAGGAGGATGGCGTTCATGCGG
TACGACTACAGGGCGCTGCCGCAGGAGACGACGGTGGAGGAGTTCCGGGCGTGGCTGGCGCAGTTCGACGCGGACGGGGA
CGGGCGGATCAGCCGGGAGGAGCTGCGGGAGGCGCTGCGCAGCCTCGACCTGTGGTTCGCCTGGTGGAAGGCCCGGGAGG
CGCTGCGGGACGCCGACGCCAACCGCAACGGCCTCGTCGACGGCGACGAGATGGCCAGGCTCTACGCCTTCGCGCGCACC
AACCTCCACCTCAAGGCCGCCGACCTCGACGCCTAGCCGTAGCCTGGTACTAGCAGCAGCAGCCTCCCAATAATCTCTGT
CCGATCGGTCCATCCATCAGATACG---TACGTACGTACTCCTACTAGCTGGCTTGGATGCGATTGCTCGTGG-------
CTGGTTGATTGGTACAGTATTAGGTTGTAAATAATCAGTGAAGTGGATTTTGTGTTGTGTGTGCTACTGGCTCTCGACCT
GTTTCTTTTTGTTCTTTCCTGCTTCGGAAGTTCAGAA-TCTCTGAAAAATGAACGACTGAACCGATGCACGTGCCGG---
-CATCTTCAGTGATCAGAACCGTATGATTTCTCCACTTGGAGACGTGGTCTGTGTGTGAATAATGATGCTTGGAGACGTT
GTCTGACC---GTTGCTACGTTGTTCTCTGCTGGACTTCCTGATGCATAAGCACCAACAGCTCCTACTCGCTGCACAGCG
ACGGACATCGCGCGTGCCGCTGCACACAACTTGATAACATGGTTTTCTGTTTTTCTAAGGGAGCGACCTGATTATCATTG
ATCAAGTTCAACCGAACAAAATATATCAAAACG-AG-GAACTGAAAATGGCTGTTCGAAAAACAGAGAGTTCATTTTTTT
TTTCGGGGGGGCAGAGAGTTCATTCACACATACACACCAAAAAAAAAAACCCAGAGAGTTCAGATAAAACACAAAATTAC
ATCAAAGTCGTTCGAAA-CTGTCAACTATAGCTCCATTGTTGAATACAAATCCTGAAAATTGTAGAATACAAAACCTATG
CACTATGCTCAAATATTTGAAA---------GAGTCTCATACACAATAAGTGAGAACCTAAAATCATGCGATCCATCGT-
----GGGCATGACCCACCCCTAGCAAGGTCACATGTCTGACGTCTACTATGTTATCATATGGTTGAGAAAAACGATCATG
AGCATGAAAGAGTGTAGCCGTGAGAACAAC--------------------------------------------------
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>chr6B_49
------------------------------------------------AAAAATGTTCGATTTGTCATGCCTAAAATTCT
GACATTCACTGAATATTCAGGTCCTTACAATGAAAAAAAAAACCTTCACAACTAGTGCACGCTTGAAAAAAGAAGTCTTG
CAGCGCGATGGGCTTCCATGCCGTTGGATTGCCAGCGGCCACCCGCTGGTTTCGCAA-----------CTGACGTCACAG
TGTTACGTGGTTCGGACGTCGCACGCACACTGGTACATATGGCGGTATCAACTCCGATCC-GCTGAAAGTATCGACTGAC
GCTTACGCTTTACCTAATGGCTAAGCATTGACCGTACATGTTGCTTCTCGGAAGGAAGCTAATGC---------------
-----CAATATTAATTTTTGAACGAAGTCCCATCTTATCTT----------------GAATGCTGATCAAGTTGGTCACG
ACTGACAATATGATATAACCCATCACCTGG----TGTGTCATTTCCG---------------------------------
-------------CATGAGTTCAACACTATTGCTCGGTGGACTAATCTCTCTCGATCCGTTTTGCTATCTGGAATGG---
--ACCAAGCTAGCGATCGGACACAACACAAGCAACACTACAAC--------AGTATAGAATAATCACTGCATGCGTCCGC
AGCAAAAATGTACTATG-TGCCGTTGAAGTCAAAGGCATCCGATTCCAAGTTCTTGGAGGAAGCATCGGGCATGCACGGA
TGTAGTCACCAGGCTACCAATGTTCTTCGAGCAAGCATCGAATCTGATGATAGACTAGCAGCCTGTCGAAAAAGCAGCCG
ATATCTTCGCTGATTGGCCTCGCCTAACAACGCATCAAACGTGCGCCGAAACGTGAGGCAACGAGAGTGCCCGTAAAAGC
ATGAACTTTGTCAT--CGCCATGGATATCGGGTATATATAGACGGGCATCAACCGCGGGGACGGAGGAGCAAACACGTAC
GCACTCTCTGTCTGAGAGAGCAAAGCATACA-----A---------------AAGATCGAGGAAGATGGCGTTCATGCGG
TACGACTACAGGGCGCTGCCGCAGGAGACGACGGTGGAGGAGTTCCGGGCGTGGCTGGCGCAGTTCGACGCGGACGGGGA
CGGGCGGATCAGCCGGGAGGAGCTGCGGGAGGCGCTGCGCAGCCTCGACCTGTGGTTCGCCTGGTGGAAGGCCAGGGAGG
CGCTGCGGGACGCCGACGCCAACCGCAACGGCCTCGTCGACGGCGACGAGATGGCCAGGCTCTACGCCTTCGCGCGCACC
AACCTCCACCTCAAGGCCGCCGACCTCGACGCCTAGCCTAGCACTGCT---------AGCAGCCTCCCAATAATCTCTCT
CTGATCGATCCGTC----AGATACG---TACTGTACG-----TACTAGCTGGCTTGGATGCGATTGCTCGTGG-------
CTGCTTGATTGGTACAGTATTAAGATGTAAATAATCAGTAAAGTGGATTTTGTGTTGTGTGTGCTACTGCCTCTGGACCT
GTTTCTTTTTGTTCTTTCCTGCCTCAGAAGTTCAGAGTCCCCTGAAAAATGAACAGCTGAACCGATGCACGTGCCGG---
-CATCTTCAGTGATCAGAACCATATGATTCCTCAACTTGGAAACGTGGTCTGTGTGTGAATAATGGTATTTGGAGACGCC
GTCCGACCGTTGTTGCTACGTTGTTCTCTGCTGGACTTCCTGATGCATAAGCACGAATAGCTCCTAATCGCTGCACAGCG
ACGGACAT----CGTGCCACTGCACACAACTTGATAACATGTTTTT-----TTTCCAAGGGAACGACCTGATTATCATTG
ATCAAGTTCAACAGAACAAAATATATCAAAACCAAG-AAACTGAAAAGGGCTGTTCGGAAAACAGAGAGTTCGC------
---------------------------------------------------------------ATAAAGCACAAAGTTGC
ATCAAAGTCGTTCGAAAACTGTCAACTCTAGCTTTATTATCAAATACAAATCCTGAAAAATG-----TACAAAACCTACG
TACTATGCTCAAAGATTTTAAA---------GAGTCTCATACACAATAAGTGAGAACCTAAAATCATGCGATCCATCATG
GGCAGGACAGGATCCACCCCTAGCAAGGTCACATGTCTTACGTCTACTATGTTATCATATGGTTGAGAAAACCGATCATG
AGCATGATAAAGTGTAGCCGTGAGAACAATTGC-----------------------------------------------
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>SNPs
SSSSS---------S----S--------SS---------S-----S-S-------------------S------------
-------------------S-------------S-SSSSSSS-SS----------------S------------------
----------------------S--------------------------------------S-------S----------
-S---------------------------------------------------S-SSSS-S-----------S-------
------------------------------------SS----------------------S-SSSSSSSSSSSSSSSSSS
SSSSS-----------------------------------------SSSSSS--S--------------S----------
----------------------S-------SSSS--------S-------------------------------------
---------------------------S--S-------------------SS-----SS---SSS-SSSS-SSSS-----
-------------S--------------S------S-------SSSSSSSS-----------------------------
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-------------------------------------------------------------S--S---------------
-------SS-----------------------------------------------------S----------S------
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----SS----SS--S---------SS-SSSS-SSSS--------------------------------------------
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---------------------------------------------S----------------------------------
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--------------------SS-SSSSS---------------------------------------------SSSSSSS
-----------------------------------------------------S--------------------------
---------------S----------------SSSS-S-----S----------------S----------------SSS
S--------------------------------------------------------S----------------------
------S------------------S-----------------S-----S------------------------------
-----------------------------------------------------S---------------------SS---
-S----S----------S--S---S-----S----SS----------S--SSSSSSSS--SSS-----------------
-----------------------------------------------------------S-S----------S------S
---S-----S-----S-S-----------------S---S--------SS------------------------------
------------------S---SSSSSSSSS-------------------------------------------------
-------------------S---S--------------SSS----------------S---------------S------
-----------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_689
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-----------------------------AGCAACGCTACAACGCTACT-------------------------------
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>reverse_1804
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-------------------------------------------CGCATATGCACCAACAGCTC-----------------
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