>input_sequence_84779
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--------------ATGGCGTTCATGCGGTACGACTACAGGGCGCTGCCGCAGGAGACGACGGTGGAGGAGTTCCGGGCG
TGGCTGGCGCAGTTCGACGCGGACGGGGACGGGCGGATCAGCCGGGAGGAGCTGCGGGAGGCGCTGCGCAGCCTCGACCT
GTGGTTCGCCTGGTGGAAGGCCAGGGAGGCGCTGCGGGACGCCGACGCCAACCGCAACGGCCTCGTCGACGGCGACGAGA
TGGCCAGGCTCTACGCCTTCGCGCGCACCAACCTCCACCTCAAGGCCGCCGACCTCGACGCCTAG---------------
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>chr6B_1_TraesCS6B01G351800
GGACACTGATGTATTTCCGTTATGTCACGGTAATGGAAAGGGGTTATGCCCGGTTCAAAAAAAAAGAACCTAGCGTGAAA
AATGTTCGATTTGTCATGCCTAAAATTCTGACATTCACTGAATATTCAGGTCCTTACAATGAAAAAAAAAACCTTCACAA
CTAGTGCACGCTTGAAAAAAGAAGTCTTGCAGCGCGATGGGCTTCCATGCCGTTGGATTGCCAGCGGCCACCCGCTGGTT
TCGCAA-----------CTGACGTCACAGTGTTACGTGGTTCGGACGTCGCACGCACACTGGTACATATGGCGGTATCAA
CTCCGATCC-GCTGAAAGTATCGACTGACGCTTACGCTTTACCTAATGGCTAAGCATTGACCGTACATGTTGCTTCTCGG
AAGGAAGCTAATGC--------------------CAATATTAATTTTTGAACGAAGTCCCATCTTATCTT----------
------GAATGCTGATCAAGTTGGTCACGACTGACAATATGATATAACCCATCACCTGG----TGTGTCATTTCCGCATG
AGTTC----------------------------------------------AACACTATTGCTCGGTGGACTAATCTCTC
TCGATCCGTTTTGCTATC-----TGGAATGGACCAAGCTAGCGATCGGACACAACACAAGCAACACTACAAC--------
AGTATAGAATAATCACTGCATGCGTCCGCAGCAAAAATGTACTATG-TGCCGTTGAAGTCAAAGGCATCCGATTCCAAGT
TCTTGGAGGAAGCATCGGGCATGCACGGATGTAGTCACCAGGCTACCAATGTTCTTCGAGCAAGCATCGAATCTGATGAT
AGACTAGCAGCCTGTCGAAAAAGCAGCCGATATCTTCGCTGATTGGCCTCGCCTAACAACGCATCAAACGTGCGCCGAAA
CGTGAGGCAACGAGAGTGCCCGTAAAAGCATGAACTTTGTCAT--CGCCATGGATATCGGGTATATATAGACGGGCATCA
ACCGCGGGGACGGAGGAGCAAACACGTACGCACTCTCTGTCTGAGAGAGCAAAGCATACA-----A--------------
-AAGATCGAGGAAGATGGCGTTCATGCGGTACGACTACAGGGCGCTGCCGCAGGAGACGACGGTGGAGGAGTTCCGGGCG
TGGCTGGCGCAGTTCGACGCGGACGGGGACGGGCGGATCAGCCGGGAGGAGCTGCGGGAGGCGCTGCGCAGCCTCGACCT
GTGGTTCGCCTGGTGGAAGGCCAGGGAGGCGCTGCGGGACGCCGACGCCAACCGCAACGGCCTCGTCGACGGCGACGAGA
TGGCCAGGCTCTACGCCTTCGCGCGCACCAACCTCCACCTCAAGGCCGCCGACCTCGACGCCTAGCCTAGCACTGCT---
------AGCAGCCTCCCAATAATCTCTCTCTGATCGATCCGTC----AGATACG---TACTGTACG-----TACTAGCTG
GCTTGGATGCGATTGCTCGTGG-------CTGCTTGATTGGTACAGTATTAAGATGTAAATAATCAGT-AAAGTGGATTT
-TGTGTTGTGTGTGCTACTGCCTCTGGACCTGTTTCTTTTTGTTCTTTCCTGCCTCAGAAGTTCAGAGTCCCCTGAAAAA
TGAACAGCTGAACCGATGCACGTGCCGGCATC----TTCAGTGATCAGAACCATATGATTCCTCAACTTGGAAACGTGGT
CTGTGTGTGAATAATGGTATTTGGAGACGCCGTCCGACCGTTGTTGCTACGTTGTTCTCTGCTGGACTTCCTGATGCATA
AGCACGAATAGCTCCTAATCGCTGCACAGCGACGGACAT----CGTGCCACTGCACACAACTTGATAACATGTTTTT---
--TTT----CCAAGGGAACGACCTGATTATCATTGATCAAGTTCAACAGAACAAAATATATCAAAACCAAGAAACTGAAA
AGGGCTGTTCGGAAAACAG-------------------------------------------------------------
--------AGAGTTCGCATAAAGCACAAAGTTGCATCAAAGTCGTTCGAAAACTGTCAACTCTAGCTTTATTATCAAATA
CAAATCCTGAAAAATG-----TACAAAACCTACGTACTATGCTCAAAGATTTTAAAGAG---------TCTCATACACAA
TAAGTGAGAACCTAAAATCATGCGATCCATCATGGGCAGGACAGGATCCACCCCTAGCAAGGTCACATGTCTTACGTCTA
CTATGTTATCATATGGTTGAGAAAACCGATCATGAGCATGATAAAGTGTAGCCGTGAGAACAATTGCACAAAGCATACTT
GCCACTAACCCGATCATCGGCAGCTCGG-CCGAAAAAACCCAAAACTGGGTCGTGCTTCTTTTGCAGCTGAAAAGACAGC
TCGGGACGGGCCCAGGTTTCAATATTCCAGATTTCCAGGATCTCCTTTTTTTGACGGGAAGTCCTTCACGACTAGC
>chr6D_78
-----------------------------------------------------------------------------AAA
AACGCTCGATTTGTCAAGCCTAAAAATCTGACGTTCGCTGAATATTCACGTCCTTACAACGGGATTTTCTTTTG---CAA
GTAGTGCACGAT-----------GTCTTGCAGCGCGATGGGCTTCCATGCCATTGGATTGCCAGCGGCCACCCGCTGGTT
TCGCAATGGCTAGACAGCCGACGTCACAGTCTTACGTGGTTCGGACGTCGCAC----ACTGGTACACATGGCGGTATCAA
CTTCCGATCGGCTGAAACTATTGACTGACGCTTACGCTTTACCTAATGGCTAAGCATTGACCGTATTTGTTGCTTCTCGG
AAGGAAGCTTAGAGCAATATTAAAAAAAAATGAACAATATTAATTTTTGAA-GAAGTCCCATCTTATCTTCTAGACAAGA
TACAGAGAATGCTGATCAGGTTGGTCACGACTGACAATATGATATAACCCAGCACCTGGCTGGTGTGTCATCGCCGCATG
AGTTC----------------------------------------------AACACGATCGCTCGGTGGACTAATCTCTT
GTGATCTTTTTGCTTGGTGGACCA---------------AGCAATCGGG-----CACGAGCAACGCTACAACGCTACTAC
AGTATAGAATAATCACTGCATGCGTCCGCAGCAAAAATGTAC---G-TGCCGTTGAAGTCAAAGGCATCCGATTCCAAGT
TCTTGGAGGAAGCATCGGGCATGCACGGATGAAGTCACCAGGCTGCC-ATGTTCTTCGAGCAAGCATCGAATCTGATGAT
AGACTGGCCGGCTTTCGAAAAAGCAGCCGATATCTTTACCGATTGGCCTCGCCTAACAACGCATCAAACGTGCGCCGAAA
CGTGAGGCAACCGGAGTGCCCGCGAAAGCATGTAGACGTAGTTACCGCCATGGATCTCGGGTATATATAGATGGGCATCA
ACCGCGGGGACGGAGGAGCAAACACGTACGCACCGTCTGCGTGCGAGAGCAAAAAAACAGAGTAGA--------------
-AAGATCGAGGAGGATGGCGTTCATGCGGTACGACTACAGGGCGCTGCCGCAGGAGACGACGGTGGAGGAGTTCCGGGCG
TGGCTGGCGCAGTTCGACGCGGACGGGGACGGGCGGATCAGCCGGGAGGAGCTGCGGGAGGCGCTGCGCAGCCTGGACCT
GTGGTTCGCCTGGTGGAAGGCCAGGGAGGCGCTGCGGGACGCCGACGCCAACCGCAACGGCCTCGTCGACGGCGACGAGA
TGGCCAGGCTCTACGCCTTCGCGCGCACCAACCTCCACCTCAAGGCCGCCGACCTCGACGCCTAGCCTAGCACT------
---AGCAGCAGCCTCCCAATAATCTCTCTCCGATCGGTCCATC----AGGCATCAGATACGTACGTACTCCTACTAGCTG
GCTTGGATGCGATTGCTCGTGGATCGTGGCTGGTTGATTG-----GTATTAGGTTGTAAATAATCAGT-AAAGTGGATTT
-TGTATTGTGTGTGCTACTGGCTCTGGACCTGTTTCTTTTTGTTCTCTCCTGCTTCAGAAGTTTCAGGGTCTCTAAAAAA
TGAACAGCTGACCCGATGCACGTGCCGGCATCCATCTTCAGTGATCAGAACCATATGATTCCTCAACTTGGAAACGTGGT
CTGTGTGTAAATAATGATGTTTGGAGACGTTGTCCGATC---GTTGCTACGTTGTTGTCTGCTGGACTTCCTGACGCATA
TGCACCAACAGCTCCTAATCGCTGCACAGCGACGGACAT----CGTGCCGCTGCACACAACTTGATAACATGGTTTT---
--TGTTTTCCTAAGGGAGCGACCTGATTATTTTTGACCAAGATCAACCGAACCAAGTATTTCAAATCGAATGAACTGAAA
AAGGACAAGAACAACGAA--------------------------------------------------------------
--------AGAGTACCGATAAAACACGAAGTTATATCGAAGTCATTCGAGAG-TGTCAACTCTAGCTCCGTTACTGAATA
CAGTTCCTGAAAAATGTAGAATACAAAACCTATGCACTATGCTCAAAGATTTCAAAGAGGGATATGAGTCTCATACACAA
TAAGTGAGAACCTAAAATCATGCGATCCATCATGGGCAGGACAGGACCCACCCGTAGTAAGGTCACATGTCTAGTGTCTA
CTATGTTATCACATGGTTGAGAAAAACTATCATGAGCATGAAAGAGTGTAGACGTGAGAACAACTGC-------------
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>chr6A_208
TGCCT---------------------------------------------------------------------------
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-----------------------------------------------------TGGATTGCCAGTGGCCACCCGCTGGTT
TGGCAATGGCGAGACAGCTGACGTCACAGTGATACGTGGTTCGGACGTCGCAC----ACTGGTACACATGGCGGTATCAA
------TCC-GCTGAAACTATCGACTGACGCTTACGCTTTACCTAATGGCTAAGCATTGACCGTACACGTTGCTTCTCGG
AAGGAAGCTAATGC--------------------CAATATTAATTTTTGAACGAAGTCCCATCTTATCATCTAGAG----
-ACGGAGAATGCTGATCAAGTTGGTCACGACTGATCAAGT--------------CCTGGCTGGTGTGTCATTGCCTCATG
AGTTCTTTTTTTTCTTTTTTTCTTTTTTGCGGGTGATTGCCTCATGAGTTCAACACTATTGCTTGGTGGACTAATCTCTC
TTGATCCGTTTTGCTATCTGGAATGGAATGGACCACGCTAGCGATCGGG-----CACAAGCAACACTACAAC--------
AGTATAGAATAATCACTGCATGCGTCCGCAGCAAAAATGTATGTGCATGCCGTTGAAGTCAAAGGCATCCGATTCCAAGT
TCTTGGAGGAAGCATCGGGCATGCACGGGTGAAGTCACCAGGCTGCCAATGTTCTTCGAGCAAGCATCGAATCTGATGAT
AGACTGGCCGCCTGTCGAAAAAGCAGCCGATATCTTCGCCGATTGGCCCCGCCTAACAACGCATCAAACGTGCGCCGAAA
CGTGAGGCAACGGGAGTGCCCGTGAAAGCATGTAGACGTAGTTACCGCCATGGATCTCGGGTATATATAGCTCGGCATCA
ACCGCGGGGACGGAGGGGCGAACACGTACGCACTCTCTGTCTGAGGGAGCAAACCATTGTACGCACAGAGAGAAAGAAAG
GAAGATCGAGGAGGATGGCGTTCATGCGGTACGACTACAGGGCGCTGCCGCAGGAGACGACGGTGGAGGAGTTCCGGGCG
TGGCTGGCGCAGTTCGACGCGGACGGGGACGGGCGGATCAGCCGGGAGGAGCTGCGGGAGGCGCTGCGCAGCCTCGACCT
GTGGTTCGCCTGGTGGAAGGCCCGGGAGGCGCTGCGGGACGCCGACGCCAACCGCAACGGCCTCGTCGACGGCGACGAGA
TGGCCAGGCTCTACGCCTTCGCGCGCACCAACCTCCACCTCAAGGCCGCCGACCTCGACGCCTAGCCGTAGCCTGGTACT
AGCAGCAGCAGCCTCCCAATAATCTCTGTCCGATCGGTCCATCCATCAGATACG---TACGTACGTACTCCTACTAGCTG
GCTTGGATGCGATTGCTCGTGG-------CTGGTTGATTGGTACAGTATTAGGTTGTAAATAATCAGTG-AAGTGGATTT
-TGTGTTGTGTGTGCTACTGGCTCTCGACCTGTTTCTTTTTGTTCTTTCCTGCTTCGGAAGTTCAGAA-TCTCTGAAAAA
TGAACGACTGAACCGATGCACGTGCCGG----CATCTTCAGTGATCAGAACCGTATGATTTCTCCACTTGGAGACGTGGT
CTGTGTGTGAATAATGATGCTTGGAGACGTTGTCTGACC---GTTGCTACGTTGTTCTCTGCTGGACTTCCTGATGCATA
AGCACCAACAGCTCCTACTCGCTGCACAGCGACGGACATCGCGCGTGCCGCTGCACACAACTTGATAACATGGTTTTCTG
TTTTT----CTAAGGGAGCGACCTGATTATCATTGATCAAGTTCAACCGAACAAAATATATCAAAACGAG-GAACTGAAA
ATGGCTGTTCGAAAAACAGAGAGTTCATTTTTTTTTTCGGGGGGGCAGAGAGTTCATTCACACATACACACCAAAAAAAA
AAACCCAGAGAGTTCAGATAAAACACAAAATTACATCAAAGTCGTTCGAAA-CTGTCAACTATAGCTCCATTGTTGAATA
CAAATCCTGAAAATTGTAGAATACAAAACCTATGCACTATGCTCAAATATTTGAAA---------GAGTCTCATACACAA
TAAGTGAGAACCTAAAATCATGCGATCCATCGT-----GGGCATGACCCACCCCTAGCAAGGTCACATGTCTGACGTCTA
CTATGTTATCATATGGTTGAGAAAAACGATCATGAGCATGAAAGAGTGTAGCCGTGAGAACAAC-----AAAATATACTT
GACACTAACCCGATCATGGGCAGTCCGGCCCGAAAAAACCCGAAACCAGGCCGTGCTTCTTTTTCAGCTCAAAAGTGAGC
TCGGAAGGGCTCGGGCTTCAGTA--TCCGGATTTCCAGG-------------------------------------
>chr7D_1087
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--------------------GGACGGCGACCGGCGCATCACCCGGTGT-AGCTACGGGAGGTGCTGCGCTGTCTGGACCT
GTGGTACGCCTGGTGGAAGGCCAGGGAGGCGCTGCGGTACACCGACGCCAACCGCAACGGTCTCGTCAACGGCGACGAAA
TGGACAGGCTCTACGCCTTCGCGCGCAGAAACATCCACCTCAAGGCCGGTGACCTGGTCGTGTAGTAGCTTCAGAATC--
----------------------TCTCTGTCTGATCAATTATTCACCACA-----------------------ACTAGCTG
GCTTGGGCGCGATTGATCGTGG-------CTGATTAATTG-----GTAATAGGTTGTAAATAAATAATCAAAGTGGATTT
ATGTACTGTGTATACTACTAGCTCTAGACGAGCTCCGTTTTCTTCTTTGCTGCTGCAGCGTCTCTG--------GAAAAT
TGAACCACTGAACAGATGCACGTGCAGG----CATCTTCAGAGATCAGAACCATACGGTTCCTCCACATGGAGACGTGGT
CT-TGTGTAAATAATGAGATTTGGAGACGTTGTCCGCCC---GTTGTTG-------------------------------
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>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
--S-S-----------S--------S------S---S-----------S----------S-SS-SSSSSSSSSSSSS---
S---------S-SSSSSSSSSSS----------------------------S----------------------------
-----------------------------------------------------SSSS---------S-------------
--S-SS-----------S--------------------------------------------------------------
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---------------------------------------------------S--------------------S-------
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-S---------------------------------S------------SSSSSS--------------------------
------------------------------------------SSS-----------------------------------
-------------------------------S------------S-----------------------------------
-----S--S------------------------------S----------------------------------------
------------S----------S--------S-SSSSSSSS-------------S---------------S--------
-----------------------------------------------------S---SSS--------------------
------------S-------------------------------------------------------------------
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---------------------------------------------------------------------------S----
----------------------------------------S-------------------SSSSSS--------------
--------------------------------S------------------S-S--------------------------
--------------------S--------------------------------S--------------SS-S--------
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----------------S------------SS--------SSS--------------------------------------
-----S--S----------------------------------------S----------------------S-------
----------S------S-----------------------------S-------------------S--SS--------
-S---------S--------------------------------------------------------------------
---------------SS-----S---------S------------------S---------------SS-----SS----
--------------------------------S-S-----------------S---------------------------
----------------------------------------------S-------------------------S-------
-------------------------S---------------S-S-------------------S---SS---SS------
-S---------------S-----SS----------------S----SS--S------------S-----S-----SS---
----S-S--SS-SS-S--SSSSSSS---S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_693
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---------------------------------CAAGCTAGCGATCGGACACA---------------------------
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>reverse_2485
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----GACGGGCCCAGGTTTCAATA----------------------------------------------------
