>input_sequence_84774
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--------------------------------------ATGGCGTTCATGCGGTACGACTACAGGGCGCTGCCGCAGGAG
ACGACGGTGGAGGAGTTCCGGGCGTGGCTGGCGCAGTTCGACGCGGACGGGGACGGGCGGATCAGCCGGGAGGAGCTGCG
GGAGGCGCTGCGCAGCCTCGACCTGTGGTTCGCCTGGTGGAAGGCCCGGGAGGCGCTGCGGGACGCCGACGCCAACCGCA
ACGGCCTCGTCGACGGCGACGAGATGGCCAGGCTCTACGCCTTCGCGCGCACCAACCTCCACCTCAAGGCCGCCGACCTC
GACGCCTAG-----------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G321100
AGCTTGCCATCCTCGCCGAACACAACTTATCATGAAAAACA-CTCGATTTGTCATGCCCAAGAATCTGAGGTTCGATGAA
TATTCGGGTGCTTACAACTGAAAATATTCA--CAAGCAGTGCACGTTTGGAAAAAAGAATTGCCT------------TGG
ATTGCCAGTGGCCACCCGCTGGTTTGGCAATGGCGAGACAGCTGACGTCACAGTGATACGTGGTTCGGACGTCGCAC---
-ACTGGTACACATGGCGGTATCAA------TCC-GCTGAAACTATCGACTGACGCTTACGCTTTACCTAATGGCTAAGCA
TTGACCGTACACGTTGCTTCTCGGAAGGAAGCTAATGC--------------------CAATATTAATTTTTGAACGAAG
TCCCATCTTATCATCTAGAG-----ACGGAGAATGCTGATCAAGTTGGTCACGACTGATCAAGTCCTGG----------C
TGG----TGTGTCATTGCCTCATGAGTTCTTTTTTTTCTTTTTTTCTTTTTTGCGGGTGATTGCCTCATGAGTTCAACAC
TATTGCTTGGTGGACTAATCTCTCTTGATCCGTTTTGCTATCTGGAATGGAATGGACCACGCTAGCGATCGGG-----CA
CAAGCAACACTACAAC--------AGTATAGAATAATCACTGCATGCGTCCGCAGCAAAAATGTATGTGCATGCCGTTGA
AGTCAAAGGCATCCGATTCCAAGTTCTTGGAGGAAGCATCGGGCATGCACGGGTGAAGTCACCAGGCTGCCAATGTTCTT
CGAGCAAGCATCGAATCTGATGATAGACTGGCCGCCTGTCGAAAAAGCAGCCGATATCTTCGCCGATTGGCCCCGCCTAA
CAACGCATCAAACGTGCGCCGAAACGTGAGGCAACGGGAGTGCCCGTGAAAGCATGTAGACGTAGTTACCGCCATGGATC
TCGGGTATATATAGCTCGGCATCAACCGCGGGGACGGAGGGGCGAACACGTACGCACTCTCTGTCTGAGGGAGCAAACCA
TTGTACGCACAGAGAGAAAGAAAGGAAGATCGAGGAGGATGGCGTTCATGCGGTACGACTACAGGGCGCTGCCGCAGGAG
ACGACGGTGGAGGAGTTCCGGGCGTGGCTGGCGCAGTTCGACGCGGACGGGGACGGGCGGATCAGCCGGGAGGAGCTGCG
GGAGGCGCTGCGCAGCCTCGACCTGTGGTTCGCCTGGTGGAAGGCCCGGGAGGCGCTGCGGGACGCCGACGCCAACCGCA
ACGGCCTCGTCGACGGCGACGAGATGGCCAGGCTCTACGCCTTCGCGCGCACCAACCTCCACCTCAAGGCCGCCGACCTC
GACGCCTAGCCGTAGCCTGGTACTAGCAGCAGCAGCCTCCCAATAATCTCTGTCCGATCGGTCCATCCATCAGATACG--
-TACGTACGTACTCCTACTAGCTGGCTTGGATGCGATTGCTCGTGG-------CTGGTTGATTGGTACAGTATTAGGTTG
TAAATAATCAGTGAAGTGGATTTTGTGTTGTGTGTGCTACTGGCTCTCGACCTGTTTCTTTTTGTTCTTTCCTGCTTCGG
AAGTTCAGAA-TCTCTGAAAAATGAACGACTGAACCGATGCACGTGCCGG----CATCTTCAGTGATCAGAACCGTATGA
TTTCTCCACTTGGAGACGTGGTCTGTGTGTGAATAATGATGCTTGGAGACGTTGTCTGACC---GTTGCTACGTTGTTCT
CTGCTGGACTTCCTGATGCATAAGCACCAACAGCTCCTACTCGCTGCACAGCGACGGACATCGCGCGTGCCGCTGCACAC
AACTTGATAACATGGTTTTCTGTTTTT----CTAAGGGAGCGACCTGATTATCATTGATCAAGTTCAACCGAACAAAATA
TATCAAAACGAG-GAACTGAAAATGGCTGTTCGAAAAACAGAGAGTTCATTTTTTTTTTCGGGGGGGCAGAGAGTTCATT
CACACATACACACCAAAAAAAAAAACCCAGAGAGTTCAGATAAAACACAAAATTACATCAAAGTCGTTCGAAA-CTGTCA
ACTATAGCTCCATTGTTGAATACAAATCCTGAAAATTGTAGAATACAAAACCTATGCACTATGCTCAAATATTTGAAA--
-------GAGTCTCATACACAATAAGTGAGAACCTAAAATCATGCGATCCATCGT-----GGGCATGACCCACCCCTAGC
AAGGTCACATGTCTGACGTCTACTATGTTATCATATGGTTGAGAAAAACGATCATGAGCATGAAAGAGTGTAGCCGTGAG
AACAA-----CAAAATATACTTGACACTAACCCGATCATGGGCAGTCCGGCCCGAAAAAACCCGAAACCAGGCCGTGCTT
CTTTTTCAGCTC
>chr6D_3
--CTTGACATCCTCGGTGAACACAACCTATCACGAAAAAACGCTCGATTTGTCAAGCCTAAAAATCTGACGTTCGCTGAA
TATTCACGTCCTTACAACGGGATTTTCTTTTGCAAGTAGTGCACGATGTCTTGCAGCGCGATGGGCTTCCATGCCATTGG
ATTGCCAGCGGCCACCCGCTGGTTTCGCAATGGCTAGACAGCCGACGTCACAGTCTTACGTGGTTCGGACGTCGCAC---
-ACTGGTACACATGGCGGTATCAACTTCCGATCGGCTGAAACTATTGACTGACGCTTACGCTTTACCTAATGGCTAAGCA
TTGACCGTATTTGTTGCTTCTCGGAAGGAAGCTTAGAGCAATATTAAAAAAAAATGAACAATATTAATTTTTGAA-GAAG
TCCCATCTTATCTTCTAGACAAGATACAGAGAATGCTGATCAGGTTGGTCACGACTGACAATATGATATAACCCAGCACC
TGGCTGGTGTGTCATCGCCG----------------------------------------------CATGAGTTCAACAC
GATCGCTCGGTGGACTAATCTCTTGTGATCTTTTTGCTTGGTGGACCA---------------AGCAATCGGG-----CA
CGAGCAACGCTACAACGCTACTACAGTATAGAATAATCACTGCATGCGTCCGCAGCAAAAATGTAC---G-TGCCGTTGA
AGTCAAAGGCATCCGATTCCAAGTTCTTGGAGGAAGCATCGGGCATGCACGGATGAAGTCACCAGGCTGCC-ATGTTCTT
CGAGCAAGCATCGAATCTGATGATAGACTGGCCGGCTTTCGAAAAAGCAGCCGATATCTTTACCGATTGGCCTCGCCTAA
CAACGCATCAAACGTGCGCCGAAACGTGAGGCAACCGGAGTGCCCGCGAAAGCATGTAGACGTAGTTACCGCCATGGATC
TCGGGTATATATAGATGGGCATCAACCGCGGGGACGGAGGAGCAAACACGTACGCACCGTCTGCGTGCGAGAGCAAAAAA
ACAGAGTAGA---------------AAGATCGAGGAGGATGGCGTTCATGCGGTACGACTACAGGGCGCTGCCGCAGGAG
ACGACGGTGGAGGAGTTCCGGGCGTGGCTGGCGCAGTTCGACGCGGACGGGGACGGGCGGATCAGCCGGGAGGAGCTGCG
GGAGGCGCTGCGCAGCCTGGACCTGTGGTTCGCCTGGTGGAAGGCCAGGGAGGCGCTGCGGGACGCCGACGCCAACCGCA
ACGGCCTCGTCGACGGCGACGAGATGGCCAGGCTCTACGCCTTCGCGCGCACCAACCTCCACCTCAAGGCCGCCGACCTC
GACGCCTAGCCTAGCACT---------AGCAGCAGCCTCCCAATAATCTCTCTCCGATCGGTCCATC----AGGCATCAG
ATACGTACGTACTCCTACTAGCTGGCTTGGATGCGATTGCTCGTGGATCGTGGCTGGTTGATTG-----GTATTAGGTTG
TAAATAATCAGTAAAGTGGATTTTGTATTGTGTGTGCTACTGGCTCTGGACCTGTTTCTTTTTGTTCTCTCCTGCTTCAG
AAGTTTCAGGGTCTCTAAAAAATGAACAGCTGACCCGATGCACGTGCCGGCATCCATCTTCAGTGATCAGAACCATATGA
TTCCTCAACTTGGAAACGTGGTCTGTGTGTAAATAATGATGTTTGGAGACGTTGTCCGATC---GTTGCTACGTTGTTGT
CTGCTGGACTTCCTGACGCATATGCACCAACAGCTCCTAATCGCTGCACAGCGACGGACAT----CGTGCCGCTGCACAC
AACTTGATAACATGGTTTT-----TGTTTTCCTAAGGGAGCGACCTGATTATTTTTGACCAAGATCAACCGAACCAAGTA
TTTCAAATCGAATGAACTGAAAAAGGACAAGAACAACGAA----------------------------------------
------------------------------AGAGTACCGATAAAACACGAAGTTATATCGAAGTCATTCGAGAG-TGTCA
ACTCTAGCTCCGTTACTGAATACAGTTCCTGAAAAATGTAGAATACAAAACCTATGCACTATGCTCAAAGATTTCAAAGA
GGGATATGAGTCTCATACACAATAAGTGAGAACCTAAAATCATGCGATCCATCATGGGCAGGACAGGACCCACCCGTAGT
AAGGTCACATGTCTAGTGTCTACTATGTTATCACATGGTTGAGAAAAACTATCATGAGCATGAAAGAGTGTAGACGTGAG
AACAA-----C---------------------------------------------------------------------
------------
>chr6B_138
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-----------------------------------------------------------------------TGCCGTTGG
ATTGCCAGCGGCCACCCGCTGGTTTCGCAA-----------CTGACGTCACAGTGTTACGTGGTTCGGACGTCGCACGCA
CACTGGTACATATGGCGGTATCAACTCCGATCC-GCTGAAAGTATCGACTGACGCTTACGCTTTACCTAATGGCTAAGCA
TTGACCGTACATGTTGCTTCTCGGAAGGAAGCTAATGC--------------------CAATATTAATTTTTGAACGAAG
TCCCATCTTATCTT----------------GAATGCTGATCAAGTTGGTCACGACTGACAATATGATATAACCCATCACC
TGG----TGTGTCATTTCCG----------------------------------------------CATGAGTTCAACAC
TATTGCTCGGTGGACTAATCTCTCTCGATCCGTTTTGCTATCTGGAATGG-----ACCAAGCTAGCGATCGGACACAACA
CAAGCAACACTACAAC--------AGTATAGAATAATCACTGCATGCGTCCGCAGCAAAAATGTACTATG-TGCCGTTGA
AGTCAAAGGCATCCGATTCCAAGTTCTTGGAGGAAGCATCGGGCATGCACGGATGTAGTCACCAGGCTACCAATGTTCTT
CGAGCAAGCATCGAATCTGATGATAGACTAGCAGCCTGTCGAAAAAGCAGCCGATATCTTCGCTGATTGGCCTCGCCTAA
CAACGCATCAAACGTGCGCCGAAACGTGAGGCAACGAGAGTGCCCGTAAAAGCATGAACTTTGTCAT--CGCCATGGATA
TCGGGTATATATAGACGGGCATCAACCGCGGGGACGGAGGAGCAAACACGTACGCACTCTCTGTCTGAGAGAGCAAAGCA
TACA-----A---------------AAGATCGAGGAAGATGGCGTTCATGCGGTACGACTACAGGGCGCTGCCGCAGGAG
ACGACGGTGGAGGAGTTCCGGGCGTGGCTGGCGCAGTTCGACGCGGACGGGGACGGGCGGATCAGCCGGGAGGAGCTGCG
GGAGGCGCTGCGCAGCCTCGACCTGTGGTTCGCCTGGTGGAAGGCCAGGGAGGCGCTGCGGGACGCCGACGCCAACCGCA
ACGGCCTCGTCGACGGCGACGAGATGGCCAGGCTCTACGCCTTCGCGCGCACCAACCTCCACCTCAAGGCCGCCGACCTC
GACGCCTAGCCTAGCACTGCT---------AGCAGCCTCCCAATAATCTCTCTCTGATCGATCCGTC----AGATACG--
-TACTGTACG-----TACTAGCTGGCTTGGATGCGATTGCTCGTGG-------CTGCTTGATTGGTACAGTATTAAGATG
TAAATAATCAGTAAAGTGGATTTTGTGTTGTGTGTGCTACTGCCTCTGGACCTGTTTCTTTTTGTTCTTTCCTGCCTCAG
AAGTTCAGAGTCCCCTGAAAAATGAACAGCTGAACCGATGCACGTGCCGGCATC----TTCAGTGATCAGAACCATATGA
TTCCTCAACTTGGAAACGTGGTCTGTGTGTGAATAATGGTATTTGGAGACGCCGTCCGACCGTTGTTGCTACGTTGTTCT
CTGCTGGACTTCCTGATGCATAAGCACGAATAGCTCCTAATCGCTGCACAGCGACGGACAT----CGTGCCACTGCACAC
AACTTGATAACATGTTTTT-----TTT----CCAAGGGAACGACCTGATTATCATTGATCAAGTTCAACAGAACAAAATA
TATCAAAACCAAGAAACTGAAAAGGGCTGTTCGGAAAACAG---------------------------------------
------------------------------AGAGTTCGCATAAAGCACAAAGTTGCATCAAAGTCGTTCGAAAACTGTCA
ACTCTAGCTTTATTATCAAATACAAATCCTGAAAAATG-----TACAAAACCTACGTACTATGCTCAAAGATTTTAAAGA
G---------TCTCATACACAATAAGTGAGAACCTAAAATCATGCGATCCATCATGGGCAGGACAGGATCCACCCCTAGC
AAGGTCACATGTCTTACGTCTACTATGTTATCATATGGTTGAGAAAACCGATCATGAGCATGATAAAGTGTAGCCGTGAG
AACAATTGCACAAAGCATACTTGCCACTAACCCGATCATCGGCAGCTCGG-CCGAAAAAACCCAAAACTGGGTCGTGCTT
CTTTTGCAGCT-
>SNPs
SS----S--------SS---------S-----S------SS-------------S---S--S-------S-----S----
-----SS--S--------S-S-SS-SS-SS------S--------S-SSSSSSS-SSSSSSSSSS---------------
--------S----------------S--------S--------------------S------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
------------S------S-------S------------------------------SS-SS-SS-SS-----------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
-------S------------------------------------------SSSSS----S--------------------
-----------------------------------------------------------------SSSSSS---------
----------------------------------------------------S---------------------------
------------------------------------------------------------------------S-------
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--------------S-S-----------------------S--S-------------------------S-------S--
-SSS-SSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
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----------------------------------------------S---------------------------------
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-----------SSSSS---S-SSSSSS------------------------S---------------SSSS---------
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------------S----------------------------------S------------------------------S-
---------S-----------------SS---------------------------------------------S-----
--S---S-------S--------------------------S--------------S-----------------------
---------------------------------------S---------------------SSSS---------------
-------------------SSSSS--------------------------------------------------------
-----------S-----------S---------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-------------S----------------------------
---S----------S--------------------S---------------------------------S----S-----
-----------------------------------------------------S--------S--S--------------
--------------S-----------------------------------------------------------------
--------------SS-------S---------------S-----SS---S------------S----SS--S-------
-----S-----S
>forward_216
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------------------------------------GACAGCTGACGTCACAGTGA------------------------
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>reverse_1412
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---------------------------------------------------GTCCGATCGGTCCATCCATC---------
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