>input_sequence_84771
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---------------------------------------------------------ATGGCTTCCTCGCGTGCCATTAT
GATACTTTCCTTGCTTGTGTTGGCATTGTCCCAATCTGTTGTGCATGCTAGGATGATGCCAAGTCATCAACCACAAATGT
TCGCCCAGAAGACGACCACTCCACCTCCATACTCGCCATCTCCAGATTTGCTTCAAGAGTTCATGGCGCCACCGCCGCCA
ATGCCGGTTACGTTTGCCGGCAACATGGGGATCGCTGGTGCCAAGCGTAGGCGTGCTATCCATGTCG---TTCAGGGGTC
GGTTCCGAGCCCCGGCGTCGGCCATCACTAG-------------------------------------------------
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>chr6A_1_TraesCS6A01G125100
CACCAGAGGGGATACATCCTCCTAGACGCCCACAACATCCTTTGTCGTAACTTCCTTCGCAACCGCTTCCCGCTCGTGCT
GCTTCCGTTGTCGCTCCCTCCGGCTGAAGTTCTCTGCCTTGCAGCTCATTCCCACGAACGGGGGGCCCACGGATGACACC
AAGGCATCATCCATGCCGGCGGTCGGGACGGCATACCCGACAACGACATCTAGGGGGACGGATGGAGGCGGTGGTGTGGA
TGGTGGAGCAAGGGTGAAGGACGGTGGCGGCTCAGACACGGGAAATGGAGGATGTACGCGGGAGGAGGGCGCTAGATTTG
ATGGACTTGGTCAATTT--GATAGAATTTATGGTGAGTCTTATTTGTCGGATCCGATGTGACGGACACCTCTGGGCCACC
CTCATATCCACTACAAATACAGGCTGAATATGAGCGATGCCGGACACTCCTAAAAAAATGAGTGATGCCGGACAGCCCGA
ACATATAGGGCCGGCTTGAGGAGGCTTGCTGGGTCATGATTTTATGACAGAGTGACTGCCTGAGCCGTCCTCCCGGATGT
ATAGGGAGCATCTGAGGAGCCGGGCTGTAGATGCTCTAAGCCGACCATGTTCTGATTGAGATCTTTGGACCAAAACTAAA
GACCTAATAAAACGTAAAGTATATATATAGTGCTCCAGATAGTACACATGCACGAGAACTGCCTCTATGATTTGT-TCGG
CCGAAAGAAAAT-TGATAGTGATGGGTTCTCACCAATTTGACTAAGCCACAAATTCGATCGTCA--CCGCCACTCCACAC
TCAGTCGCACATACTTGATGGCCTGCTGCACCTCCTCC-----CCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCA
CATTCACCTCATCGCATATTTGCATACACTACAGAAACCC-----ATTCAGTCCC-TCTCTCACAAAGAATTTCGTACAG
ATATACACTCACGTTAGAGTTAGACTCTTCGAGCTTAGCTCGATTGATTTTACTGACATGGCTTCCTCGCGTGCCATTAT
GATACTTTCCTTGCTTGTGTTGGCATTGTCCCAATCTGTTGTGCATGCTAGGATGATGCCAAGTCATCAACCACAAATGT
TCGCCCAGAAGACGACCACTCCACCTCCATACTCGCCATCTCCAGATTTGCTTCAAGAGTTCATGGCGCCACCGCCGCCA
ATGCCGGTTACGTTTGCCGGCAACATGGGGATCGCTGGTGCCAAGCGTAGGCGTGCTATCCATGTCG---TTCAGGGGTC
GGTTCCGAGCCCCGGCGTCGGCCATCACTAGCTCGTCGATCTTCTAATCAAGTGAATATATTT-CTTTACATTTTACACA
TATCGATCTATAATTCTATATGATGGTAC--ATATGCCGTCCAACATAATGGCCAGCTGCAGCCAAAGCTT---------
--AGCTATTGAAGCTACACAA-GCATATACATGTAAAAAGGGCATCGTGCTCGCACTGGCTCGATTTGTATCTTATTTTA
GTTATTTTATGGACCGGCTATATGTAAGTTGCCTGAAAGTTTATTTTGGATAAGTCCGTTTTCTG---------ATTAAG
ATTCAACAGTCGTTCTTCTTTCTTCTTCCTTCAGCTTTCTTCCTCCTCCATCTGTTCATTCTCCCATGAAATCAACTTAC
CAAAATAGCAAATTCAATCAACTTACATATAAGCTACCGTGTA-CTTTTTTTTCAAGAATACGCCATGGAAAGGCGTACC
GATTTCATATATATTTAATATACATATATATGATCATGAATTAATGAATATATAATCAATTATCAACTTGGTTTGCTATC
ATTTGGATTATTTCATCTCTTA--------AAAAAATCCTTGAGGGTACCTTGAGAAATTAAGTGTGATGTAACCAGCTG
ACTGAATTCCATGCATGCTACTTTCAAGACTTATCTGG--CTCCAAGAAACATTCCATAATTCAGAATTTTAGCAAGTTA
TAAACTGAAGTTGCATCGGCCTTGCTCACTTGCTGCCTTGGAATTGCGATACCTGTTTCATGCATTTCTGTTGATTTGCT
GTGATCATGTCGAGTGCATAACGCCATGATCGACCTAGAGCTCACACCGTGGTGACGTCTCTCTAACCAACAATCTAACA
AACGACAAAAGCTAAGATTGGTTCGCCGGCTAATTCGGGAGAAAAATAAGGAATGTATGCGCAATGCAGATTATTTTGTT
ATCATCGATCTTATCACGCAATCATCGACTATATAACTGGCCTAAGGTGGTAGTCAATATAAAGTGTCAATTCTTAAATT
CAACATGCTGTCAGACATGCATGCAG
>chr6D_1
CACCAGAGGGGATACATCCTCCTAGACGTCCACAACATCCTCTGTCGGAACTTCCTTCGCCACCGCTTCCTGCTCGCGCT
ACTTCCGTCGTTGCTCCCTCTAGCTAAAGTTCTCTGCCTTGCAGCTCATTCCCACGAACGGGGGGCCCACGGACGACACG
AAGGCATCATCCATGCCGGCGGTCGGGACGGGATACCCGACGACAACATCTAGGGTGGCGGATGGAGGAGGCGGTGTGGA
TGGTGGAGCAAGGGTGAAGGATGGCGGCGGCTCAGACACGGGAAATGGAGGATGTACGCGGGAGGAGGGCGCTAGATTTG
ATGGACTTGGTCAATTTTTGATAGAATTTATGGTGAGTCTTATTTGTCGGATCCGATGTGACGGACACGTCCGGGCCTCT
CCCATATCCGCTCCAAATACAGGCTGAATATGAGCGATGCGGGACACTCCTAAAAAAATAAGCGATGCCGGACAGCCCGA
ACATATAGAGCCGGCTTGAGGAGGCTTGCCGGGTCACGATTTTATGACAGGGTCACTGCCTGAGCCGTCCTCCCGGATGT
ATAGGGAGCATCTGAGGAGCCGG---------------------CCATGTTCTGATTGAGATCTTTGGACCAAAACTAAA
GACATAATAAAACGGAAAGTATATATGTAGTGCTCCAAATAGTACACATGCACGAGAACTGCCTCTATGATTTGT-TCGG
CCGAAAGAAAAT-TGATAGTGATGGGTTCTCACCAATTTGACTAAGCCACAAATTCGATCGTCACGCCGCCACTCCACAC
TCAATCGCACAAAGTTGATCGTCAC------CTCCT-C-----CCTCTCATCACCTATAAATACATGCCCAGGCTCCTCA
CATTCACCTCATCGCATATTTGCAGACACTACACAAACCC-----ATTCAGTCCC-TCTAGAGTT-------------AG
ATATACACTCACGTTAGAGTTAGATTCTTCGGGCTTAGCTCGATTGATTTTACTGACATGGCTTCCTCGCGTGCCATTAT
GATACTTTCCTTGCTTGTGTTGGCATTGTCGCACTCTGTTGTGCAGGCTAGGATGATGCCAAGTCATCAACCACAAATGC
TCGCCGAGAAGACGACCACTCCACCTCCATACTCGCCATCTCCAGATTTGCTTCAAGTGTTCATGGCGCCACCGCCGCCA
ATGCCGGTCACGTTTGCCGGCAACATGGGGATCACTGGTGCCAAGCGTAGGCGTGCTATCGATGTCG---TTCACGGGTC
GGTTCCAAGCCCCGGCGTCGGCCATCACTAGGTTGTCGATCTTCTAATCAAGTGAATATATTTTCTCTACATTTTACACA
TATCGATCTGTAATTCTATATGATGGTACATATATGCCGTCCAACATAATGGCTAGCTGCAGCCAAAGCTTAGCCAAAGC
TTAGCTATTGAAGCTACACAA-GCATATACATGTAAAAAGGGCATCATGCTCGCACTGCCTCGATTTGTATCTTATTTTA
GTTATTTTATGGACCGGCTATATGTAAGTTGCCTGAAAGTTTATTTTGGATAAGTCCGTTTTCTG---------ATTAAG
ATCCAACGGTCGTTCTT-----------------CTTTCTTCCTCCTCCATCTGTTCATTCTCCCATGAAATCGACTTAC
CCAAATAGCAAATTCATTCAACTTACATATAAGCTATTGTGTACTTTTTTTTTCAAGAATACGCCATGGAAAGGCGTACC
GATTTCATATATATTTAATATACATATATATGATCATGAATTAATGAATATATAATCAATTCTCAACTTGGTTTGCTATC
ATTTGGATTATTTCACCTCTTCAAAAAAAAAAATT-TCCTTGAGGGTACCTTGATAAATTAAGTGTGAGGTAACCAGCTG
ACTGAATTCCATGCATGCTACTTTCAAGACTTATCTGG--CTCCAAGAAACATTCCATAATTCAGAATTTTAGCAAGTTA
TAAACTGAAGTTGCATCGGCCTTGCTCACTTGCTGCCTTGGAATTGCGATGCCTGTTTCATGCATTTCTTTTGATTTGCT
GTGATCATGTCGAGTGCATAACGCCATGA----CCTAGAGCTAACACTGTGGTGACGTCTCTTTAACCAACAATCCAACA
AATGACAAAAGCTAAGATTGGTTCGCCGGCTAATTTGGAAGAAAAATAAGGAATGTATGCGCAATGCATATTATTTTGTT
ATCATCGATCTTATCACGCAATCATCGACTATATAACTGGCCCAAGGTGGTAGTCAATATAAAGTGTCAATTCTTAAATC
CAACATGCTGTCAGACATGCATGCAG
>chr6B_456
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---------------------------------------------------------ATGAGTGGTGCCGAACAACCCAA
ACATATAGGGCCAGTTTGAGGAGGCTTGCTGGGTCACGATTTTACGACAGGGTCACTGCCTGAGCCGTCCTCCCAGATGT
ATAGGGAGCGTTTGAGGAGCCGGGTTGTAGATGCTCTAAGCCGGCCA---------TGAGATCTTTGGACCAAAACTAAA
GACATAATAAAACGGAAAGTATATATATAGTACTCCAAATAGTACACATGCACGAGAACTGCCTCTATGATTTGT-TCGG
CCGAAAGAAAAT-TGATAGTGATGGGTTCTCACCAATTTGACTAAGCCACAAATTCGATCGTCA--CCGCCACTCCACAC
TCAGTCGCACAAACTTGATAGTCAC------CTCCT-C-----CCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCG
CATTCACCTCATCGCACATTTGCAGACACTACACAAACCCATTCAATTCAGTTCC-TCTCTCACAAAGAATTTCGTACAG
ATATACACCCACATTAGAGTTAGACTCTTCGGGCTTAGTTCGATTGATTTTACTGACATGGCTTCCTCGCGTGCCATTAT
GATGCTTTCGTTGCTTGTGTTGGCATTGTCGCACTCTGTTGTGCAGGCTAGGATGATGCCAAGTCATCAACCACAAATGC
TCGCCGAGAAGACGACCGGTCCACCTCCATACTCATCATCTCCAGATCTGCTTCAAGTGCTCATGGCGCCACCGCCGCCA
ATGCCGGTCACATTTGCCGGCAACATGGGGATCGCTGGTGCCAAGCGTAGGCGTGCTATCCATGTCG---TTCAGGGGTC
GGTTCCGAGCCCCGGCGTCGGCCATCACTAGCTCCTCGATCTTCTAATCAAGTGAATAAATTT-CTTTACATTTTACACA
TCTCGATCTATAATTCTATATGATGGTAC--ATATGCCGTCCAACATAATGGCTAGCTAGCTGC-------AGCCAAAGC
TTAGCTATTGAAGCTACACAA-GCATATACATGTAAAAAGGGCATCATGCTCGCACTGCCTCGATTTGTATCTTATTTTA
GTTATTTTATGGACCGGCTATATGTAAGTTGCCTGAAAGTTTATTTTGGATAAATCCGTTTTCTGGGCCATTAGATTAAG
ATTCAACGGTCGTTCTTCTCTCTTCTTCCTTCAGCTTTCTTCCTCCTCCATCTGTTCATTCTCCCATGAAATCGACTTAC
CCAAATAGCAAATTCAATCAACTCACATATAAGCTACTGTGTA-TTTTTTTTTCAAGAATACGCCATGGAAAGGCGTACC
GATTTCATATATATTTAGTATACATATATATGATCATGAATTAATGAATATATAATCAATTCTCAACTTGGTTTGCTATC
ATTTGGATTGTTTCACCTCTTCAAAAAAATAAAAAATCCTTGAGGGTACCTTGAGAAATTAAGTGTGATGTAACCAGCTG
ACTGAATTCCATGCATGCTACTTTCAAGACTTATCTGGCTCTCCAAGAAACATTCCATAATTCAGAATTTTAGCAGGTTA
TAAACTGAAGTTGCATCGGCCTTGCTCACTTGCTGCCTTGGAATTGCGATATCTGTTTCATGCATTTCTGTTGATTTGCT
GTGATCATGTCGAGTGCATAACGCAATGA----CCTAGAGCTAACACTGTGGTGACGTCTCTTTAACCAACAATCTAACA
AACGACAAAAGCTAAGATTGGTTCGCCGGCTAATTCGGAAGAAAAATAAGGAATGTATGCGCAATGCAGATTATTTTGTT
ATCATC-ATCTTATCACGCAATCATCGACTATATAACTGGCCTAAGGTGGTAGTCAATATAAAGTGTCAATTCTTAAATC
CAACATGCTGTCAGACATGCATGCAG
>chr1B_701
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--------------------------------------------------------------CTCTATGATTTGTGTCGG
TCCAAAGACAACGTGATAGTGATGTGTTTTCACTAAGTTGACTAAGCCACGAACTCCATCATCA--CCGCCACTCCACAC
ACAGTCGTACATACTTGGTGGCCAGCTGCAACTCCT-A-----CCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCA
CATTCACCTCATCGCATATTTGCACACACTAGACAAACCC-----ATTCAGTTCC-TCTTACACAAAGAATTTCGTACAG
ATATACACTCACATTAGA------CTCTTCGGACTTAGCTCGATCCATTTTATTGACATGGCTTCCTCGCGTGCCATTAT
GATACTTTCCTTGTTTGTGTTGGCATTGCCGCACTCTGTTGTGCAGGCTAGGATGATGCCAAATGATCAACCACAGATGC
TCGCCGACAATACGATCGGTTCACCTCCATACTCGTCATCTCCAGATTTGCTTCAAGTGTTCATGGCGCCACCACCGCCA
ATGCCTGTTACGTTTGCCGGCAGCATCGAGATCACCGGTGCCAAGCGTAGGCGTGCTAGCCAGGCCG---TTCAGGGGTC
CGTTCCGAGCCCCGGCGTCGGCCATCACTAGCTCGTCGATCCTCTAATCAAGTGAATATATTTTCTCTACGTTTCACACA
TATCGATCTATATGA-------ATGGTGC--ATATGCCGTCCAACATATTGGCTAGCTAGCTGTAGCCA-----CAAAGA
TTAGCTACTTAGGTTAAACAAAACATATACATGTAA--------------------------------------------
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>chr1D_701
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--------------------------------------------------------------CTCTATGATTTGTGTCGG
TCCAAAGAAAACGTGATAGTGATGTGTTTTCACTAAGTTGACTAAGCCACGAACTCCATCATCA--CCGCCACTCCACAC
ACAGTCGTACATACTTGGTGGCCAGCTGCAACTCCT-ACCTCTCCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCA
CATTCACCTCATCGCATATCTGCACACACTAGACAAACCC-----ATTCAGTTCC-TCTTACACAAAGAATTTCGTACAG
ATATACACTCACATTAGA------CTCTTCGGACTTAGCTCGATCCATTTTATTGACATGGCTTCCTCGAGTGCCATTAT
GATACTTTCCTTGTTTGTGTTGGCATTGCCGCACTCTGTTGTGCAGGCTAGGATGATGCCAAATGATCAACCACAGATGC
TCGCCGAGAATACGATCGGTCCACCTCCATACTCGTCATCTCCAGATTTGCTTCAAGTGTTCATGGCGCCACCACCGCCA
ATGCCTGTTACGTTTGCCGGCAGCATCGAGATCACCGGTGCCAAGCGTAGGCGTGCTAGCCAGGTCG---TTCAGGGGTC
CGTTCCGAGCCCCGGCGTCGGCCATCACTAGCTCGTCGATCCTCTAATCAAGTGAATATATTTTCTCTACGTTTCACACA
TATCGATCTATATGA-------ATGGTGC--ATATGACGTCCAACATATTGGCTAGCTAGCTGTAGCCA-----CAAAGA
TTAGCTACTTAGGTTAAACAAAACATATACATGTAA--------------------------------------------
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>chr1A_701
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--------------------------------------------------------------CTCTATTATTTGTGTCGG
TCCAAAGAAAACGTGATAGTGATGTGTTCTCACTAAGTTGACTCAGCCACGAACTCCATCATCA--CCGCCACTCCACAC
ACAGTCGCACATACTTGGTGGCCAGCTGCAACTCCT-A-----CCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCA
CATTCACCTCATCGCATATTTGCACCCA------------------TTCCGTTCCTTCTTACACAAAGAATTTCGTACAG
ATATACACTCACATTAGA------CTCTTCGAACTTAGCTCGATCGATTTTATTGACATGGCTTCCTCGCGTGCCATTAT
GATACTTTCCTTGTTTGCGTTGGCATTGCCGCACTCTGTTGTGCAGGCTAGGATGATGCCAAGTGATCAACCACAGATGC
TCGCTGAGAAGACGATCAGCCCACCTCGATACTCGTCATCTCCAGATTTGCTTCAAGTGTTCAGGGCGCCACCACCGCCA
ATCCCTGTTACGTTTGCTGGGAACATTGAGATCACCGGTGCCAAGCGTAGGCGTGCTAGCCAGGTCGTCGTTAAGGGCTC
AGTTCCGAGCCCCGGAGTCGGTCACCACTAGCTCGCCGATCCTCTAATGAAGTGAATATATTTTCTCTACATTTCACACA
TATCGATCTACATGA-------ATGGCGC--ATATGCCGTTCAACATATTGGCTAGCTAGCTGGTGCCA-----CAAAGA
TTAGCTACTTAGGTTAAACAAAGCATATACATGTAA--------------------------------------------
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>SNPs
----------------------------S------------S-----S------------S---------S-----S---
S-------S--S--------SS---S-----------------------------------------------S-----S
-------------------------------S---------S--S----------S-S----------S--S--------
---------------------S--S-------------------------------------------------------
--------------------------------------------------------------------S--S-----S-S
-S-------S--S---------------------------S---------------------------------------
------------------------------------S-------------S--S--------------------------
------------------------S------------------S------------------------------------
---S----------S----------------------S------------------------------------------
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-----------------------S------S-----S-------------------------------------------
------------------------S--------S----------------------------------------------
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------------------------------S--S-----------S---------------------------------S
-----S---------------------------------------------------S----------------------
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-----------------------------------------------------S--------------------------
----------------------------------------------S-----------S---------------------
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-------S-----------S-----------------------------------------------------S------
-S-----------------------------------S------S-----------------------------------
-------------------------------------------------------------S------------------
---------------S-----S----------------------------------------------------------
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-----------------------------SSSS---------S----S--------------S-----------------
--------------------------------------S-----------------------------------------
-------------------------------------------------------------------------------S
--------------------------
>forward_216
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------------------------------------CCGACAACGACATCTAGGGG------------------------
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>reverse_1126
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-----CAGAAGACGACCACTCCACC-------------------------------------------------------
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>forward_1071
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-----------TGCTTGTGTTGGCATTGTCC-------------------------------------------------
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>reverse_2112
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-------------------------------GACCTAGAGCTCACACCGTG-----------------------------
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