>input_sequence_84760
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-----------------------------------------------------ATGGC------GGGCATGATGAAGAAG
CAGGTCGTGACGGCGCTGATGTTGGCGCTGGTGGTGCTGGCGGCGGCGCCGGGCGGGGCGCGCGCGGCGTGCCAGGCGTC
GCAGCTGGCGGTGTGCGCGTCGGCGATCCTCTCCGGGGCCAAGCCGAGCGGCGAGTGCTGCGGCAACCTGCGGGCGCAGC
AGGGGTGCTTCTGCCAGTACGCCAAGGACCCCACCTACGGGCAGTACATCCGCAGCCCCCACGCGCGCGACACCCTCACC
TCCTGCGGCCTCGCCGTCCCGCACTGCTAG--------------------------------------------------
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>chr4B_1_TraesCS4B01G393300
CCACTTCTATCCTCAAGACTATTAATTCATCCATTCATCTAGGAGTATCTCTCACGCTCTTTACTTCTGGCTTGCAATAA
TAATACGACCAAAGAGACTAGCGCACCACAAGA-----------CATGCTGATAATCGTACACCCGTCAATTCTACCTGT
GTCCAGGTCTTCCGTGCACCGGACACGTAGCCTACCGAATCAGTTGCAACACAGATGGGTATGCTTGCTAGGAAAGACAG
GGTCGATTCTGATACATCAACCGTCGACTCCATATCCTTGTACGAGTCCACAATCACTACACAAGATGAACCTGGGTTTG
GTGAATGGAAGTTGGCCTTAGGTGTAATAGGACTCCCAGTTACTGCGCACGATCGTATACTGAGGTGCTCCCCGTCGGTT
GTTGGAACGACCCGAGCTGGGCCGGGCGTCGATTCCTTTCAAAAAGATGAAGGGGACATCACGTCGGTGATGCAAGAGAC
TAGCGCGTTTGGACGCTTCGCATCACCTACCTTTGGATGCCTCGCATGAATGAAGTCGTGTCGTCCGCTAGCTTCGGCCT
ACACCACCCACGGAGCAGAGCCAGCGAGCAACTA--ACACCGGCCAACTACCCACTGGAGTTGAATGC------------
-------CGGACGTCCAAAGTGTGCCCGTCAACCATTCTGCTGACCCTAGTCATGG------------------------
--------------TAGAGTGTTCAACGGATTATTACAGCGGCCGTGGGCGATTCATTAGACGGCTCCCGGCAGGTGGGG
TGTTCAATTGCAGTGATGGACGTCGTCGCATGTCGCTCATTGCCCCTCTA----TCTTTAATCGCTCACCTGCTCCGTCG
GCGGCGATGGCCGCGTACGCTCCCTACGTGTCGCCGCATGGCATGCACATGG--------CCGGCTAGCTCGGGCCA---
-CGGCAGTGCGTGGCCAGCTATAAATACCCCAGCCGGGAGCTCCTAGATCCACCT-TCACACAACTACCAGTAGACTCCA
TTCCCATCACACACACGGACACACCT------GCAAGAGCGAGAGCGTGAACCATGGC------GGGCATGATGAAGAAG
CAGGTCGTGACGGCGCTGATGTTGGCGCTGGTGGTGCTGGCGGCGGCGCCGGGCGGGGCGCGCGCGGCGTGCCAGGCGTC
GCAGCTGGCGGTGTGCGCGTCGGCGATCCTCTCCGGGGCCAAGCCGAGCGGCGAGTGCTGCGGCAACCTGCGGGCGCAGC
AGGGGTGCTTCTGCCAGTACGCCAAGGACCCCACCTACGGGCAGTACATCCGCAGCCCCCACGCGCGCGACACCCTCACC
TCCTGCGGCCTCGCCGTCCCGCACTGCTAGGCGCCGGCAGGCCCCTGGCGCATATGGCTAGCTAG-CTGCCG------CC
GTGAGAGTGTCAGACTATAGCTAGCCCTAGCTGAGTGCGTACGTGTTG---CGTCCATGAACGCATCTTCCTGCTAAACT
ACTATGTGGTTCGACTTTGCTGGTACTGGAATGA----ATAAAATGTTGCGTGATGATCTGCGGCGGCCAGGTTGCTTCC
TGGCTGCTGCTGCTGGTA--ATAATATTTGTGTTGCAACCTTGATGAGATCGCCTGAGTTGTGTGCCCGTCGAGCTCCCT
CTGTCCCACAATATAAGACGTTTTTGCAGGGGTATTTTTTTGGGTACCGATGCGATCTTTGCGGCTGCTACGATGAAAGA
TCTCGGCAA----ACCGCTGTGTCGCCGGTGGCATAAATTCCGTGTATCTGTGCAGGACCCTCAAGCGCAATAAAATTTC
TGCTCTGTTTTTTTAGGAGAATTTCTGCTCTGTTGCTATGTGCTTTGTAAACAATCAAAATCGCGCAAGAAACCTTCAAA
AAAAATTTGCAAAACCACCCAAGTTGGAATACTACGAGTTTCTTAATTAGGAACCTTCCAAAAAAACATCTGCAAAACCC
AACAAGTTGGAATACTACGAGTTTCTTAATTAGGCAAACTAGTCGCACTGCT----------------------------
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------------------------------------------------------------------------------CG
GCTGCAAAAGTGAGCAAATCAAGGATCATAGGCGTTGTTATGTTTTTGCTAGAGAGTATCACTCTGTTGGCTAGGATAGC
ACGAAGCTATCTAGCCCGCCCGGATTCAAGTCACGGAGTGACCCGTGGTGCTCAGAGTGTTTTCAATGAAAATATGCCTT
CAAGGGCTAATCCTGGATGGTCTTTTTTTTTTTGCCAGAGGTGTCAATGGAATACATAGAAATGCTTGTGGACCTTTACA
TGCACCATAACT-TTTTTCAAGAAACAGTGGAGGGGGGAATGATTGCCTGTATGCTAAATATTCTTTCTCTCTCTCCTGT
ACACCGTACTTTTATTTAATTTAATTGTAAAAGAATT-------------------------------------------
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>chr5A_15
--------------AAGACTATAAATACATCCATTCATCTAC--GTATCTCTCACGCTCTTTACTTTTGGCTTGCAATAA
TAATACGACCAAAGAGACTAGCGCACCACAATACTACATATACCCATGCTGATAATCATACACCCGTCAATTCTAGCTGT
GTCCAGGTCGAAGTAACAGAC-----------------------------------------------------------
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---------------------------------------------------GGGAACATCACGGTGGTGATGCAAGAGAC
TAGCGCGTTTGGACGCTTCGCATCACCTACCTTTGGATGCCTCGCATGAATCAAGTCGTGTCGTCCGCTAGCTTCCGCCT
--ACCACCCACGGAGCAGAGCCAGCGAGCAACTA--ACACCGGCCAACTACCCACTGGAGTTGAATGC------------
-------AGGACGTCCAAGGTGTGCCCGTCAACCATTCTGCTGACCGTAGTCATGGCGAGCTGGTGCAATTCAGTGCATG
CTCTAGGTCTAGGGTAGAGTGTTCAACGGATTGTTACAGCGGCCGTGGGCGATTCATTAGACGGCTCCCCGCAGG-----
----------------TGGACGTCGTCGCATTTCACTTT----------ATCTTTCTTTAATCGCTTACCTGCTCCGTCG
GCGGCGATGGCCGCGTACGCTCCCTACGTGTCGCCGCATGGCATGCACATGGACCGATGGCCG----GCTCGGGCCA---
-CGGCAGTGCGTGGCCAGCTATAAATACCCCAGCCGGGAGCTCCTAGATCCATCT-CCACACAACTACCAGTACACTCCA
CTCCCATCACACACACGGACACACCT------GCAAGAGCGAGAGCGTGAGCCATGGC------GGGCATGGGGAAGCAG
CCGGTGGTGGCGGCGCTGATGCTGGCGCTGGTGGTGCTGGCGGCGGCGCCGGGCGGGGCGCACGCGGCGTGCCAGGCATC
GCAGCTGGCGGTGTGCGCGTCGGCGATCCTGAGCGGGGCCAAGCCGAGCGGTGAGTGCTGCGGCAACCTGAGGGCGCAGC
AGGGGTGCTTCTGCCAGTACGCCAAGGACCCCACCTACGGGCAGTACATCCGCAGCCCCCACGCGCGCGACACCCTCCAG
TCCTGCGGCCTCGCCGTCCCCCACTGCTAGGCGCCGGCAGGCCCCTGGCGCATATGGCAAGCTAG-CTGCCTCAGTGACC
ATGAGAGCGTCAGACTATAGCTAGCCCTAGCTGAGTG----CGTGTTG---CGTCCATGAACGCATCTTCCTGTCA----
ACCATGTGGTTCGACTTTGATGATGCTGGAATAAAAATATAAAATGTTGGGTGATGATCTACGGCGGCCATGTTGCTTCT
TGGCTGCTGCTGCTGGTA--ATAAAATTTGTGTTGCAACTTTGATGAGATCGGCTGAGTTGTGT----------------
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>chr5B_459
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---------------------------------------------------------------------ATGCAAGACAC
TAGCGCGTTTGGACGTTTCGCATCACCTACCTTTGGATGCCTCGCATGAATGAAGTCGTGTCGTCCGCTAGCTTCCGCCT
--ACCACCCACGGAGCAGAGCCAGCGGGCAACCAACACACCGGCCAACTACCCACTGGAGTTGAATGG------------
-------AGGACGTCCAAAGTGTGCCCGTAAACCATTCTGCTGACCGTAGTCATGGCGAGCTGGTGCAATTCAGTGCATG
CTCTAGGGTAGAG-------------------------------------------------------------------
--------TGCAGTGATGGACGTCGTCGCATTTCACTTATTGCCCCTGCA----TCTTTAATCGCTCACCTGCTCCGTCG
GCGGCGATGGCCGCGTACGCTCCCTACGTGTCGCCGCATGGCATGCACATGG--------CCG----GCTGGGGCCACGG
CCGGCAGTGCGTGGCCAGCTATAAATACCCCAG----GAGCTCCTAGATCCATCTCCCACACAACTACCAGTACACTCCA
CTCCCATCACACACACAGACACGCCTGCAAGAGC------GAGAGCGTGAACCATGGCGTCCATGGGGAAGAAGCAGAAG
CAGGTGGCGGCGACGCTGATGCTGGCGCTGGTGGTGCTGGCGGCGGCGCCGGGCGGGGCACGCGCGGCGTGCCAGGCGTC
GCAGCTGGCGGTGTGCGCTTCGGCCATCCTGTCCGGGGCCAAGCCGAGCGGCGAGTGCTGCGGCAACCTGCGGGCGCAGC
AGGGGTGCTTCTGCCAGTACGCCAAGGACCCCAACTACGGGCAGTACATCCGCAGCCCCCACGCGCGCGACACCCTCCAC
TCCTGCGGCCTCGCCGTCCCGCACTGCTAGGCACCATCCACGTACATATGGCTGAGCTAGCTAGATCTGCCTCAGTGACC
ATGAGAGCGTCAGACTATAGCTAGCC-TAGCTGAGTG----CGTGTTGTTGCGTCTATGAACG-----------------
--CATGTGGTTCGACTTTGATGATGCTGGAATGA----ATAAAATGTTGGGTGATGATCTACGGCGGCCAGGTTGCTTTC
TTCCTGGCTGCAGCCCTACGATGAAATTTGTGTTGCCCGTACGTCGAGCAGAGTTATTCTTTTT----------------
-------------------------------------------GTACCGATGCGATCTGGGCGGCTGCTACGATGAAAGA
CCTCCGCCGATCGACCGCCGTGTCACCGGTGGCTTAGCTTCCGTGCATCTGTGCGGGACCCTCAACCGCGATAAAATTTC
TGCTCTGTC-------------------------GCTGTATGCTTTGTAATCAATCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG
GGTGCACAAGTGAGCAAGTCAGGGATCATATGCGCCG-------------------------------------------
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-----------------------TTTGGTTTTTACCACAGCTGTGAATGGAGTACATAGAAATGCTTGTGGCCCTCTGCA
TGCACCATAACTCTTTTTCAAGAAACAACGGGGAGGGGAATGATCGCATGTAT---------TCTTTCTCTATATCCTGT
TCAAAATAGTTTTATTTTA-TTAATTGTAAGAGAATTTATTATAAATCTTTTCTAAATCAAACGAATGCCTTTTTATTTC
TTTAGTAATATTTTAATTCAGAGCGAGAAGATCTCCGAAACAAGACCAACCGTGGATATAAACATGAACCCATTTTTATT
TTAGTGGTGGTATCGTATTTGAAATCAGTTAAAAAAATTACTATTTCAATTGTATTAGAAATCATTTTCACATATTTAAA
AAAATCATTTAGTAGATTAAGAATTATTGGATCCAAACACTGAAATAAACAGTTTTGGATAATATGAATGAGTTTCAAAC
AGAAAAATATGTTCATATATTAAAAATATAAGTTTACACACTGAAATAAGAAACTTCAGAAAATATTAATAAATTTCATA
AACAAATTATATGTTTCATATACTTAAAATATCAGTTTCAAAAACTCAAATAAGCAGTTTAATAAATGTAAATCAGTTTC
ACTGGTTGTAAAATTCAGCATCACATTTGTAGAAAATTCACTTTAACACATTGACAAATAAATTCACGTATTGAAACAAC
CTATCTCACATATTCAACAAAAAAAATGTTCCAGGGATTATAAATATAAGTATCACAGACTAAAGTAAGCAGCTTCCCAA
ATTGTAAATCACTTTCACTAGCCAAAAAAATGAGTTTCACATTTTTGAAATAAACTGTATATAAGATTTAGAGAAAATCA
GTTGCTTATGTTAAAAATATGTTTCAAGCATTGAAACAGAAAATCCGTGTCGCGGATTCAAAATATTAATTTCACACACT
GAAAAGAAGCAGCTTGAAAAATTCTAAATCAGTTTCACTCACCGAAAATTTTAGTTTCACTTCAACAAAGAACCCCGTTT
CACATATTTGAAGAAAATCAATTTCATAGGGTAAAACAAATATATTTCACAATGTGAAACAACATATTTCACACATTTGA
AGAAAAAAAATTCATTTTTACAAGTTGAAAAATATCAATTTCACACATTGAAATAAGCAGCTTCCAAAATTAATGACAAA
ATGGCGAAAGTGGGGAATCGACACTTGGATTCGTAAAAATCTTGGACTTGCGCAAAATCTTGTATGGGTTCGACCTTGAA
TCTACAAAGCATGTGTCCCATTAATCCTCCCCCTCCCCCTCCGAAATCCTATTTGACGCGTCTAGGCAAATTTCTACAGG
GCACCCACTACCCCCTAGCTATGCACTAAGTTGGGAGTCGACCGATGTTATCTTCCCCCCACTGGTTTTGTGAACCTTGT
AGAAGGTTCCCTTTGGTTTTTTGGGCTGGATTTTCTTTGGTCATGTTTTCATCGACTTTTTTGATTTATGTCGAGCTTTT
TAAAAATACAGAGTTATATTAACTAAAAGAAAAAACATTGTTCTTACAATCTCGCAAGGCCACGCTCAAGGCGCAGGTTG
GCACTATACCTTGCATAAATCCACCACACAACTCTCTACGTCCAAATTGTGCAAGACTACGTGCTAAACCATTAACCTTT
CTTCTACTTTGCAAACTTCAACTGCTGGATTTCCTTGTCCGATAGTGTGAAATTTCCAACTTTGTTTTTTGTTTTTCTTT
CTGTTTGTTTTTCTTTATCTTAACCTTTTTAATTTTTGTTTCTTTTTTCCTTTTGTTCCATTTTAAGCCTCATGATTTTT
TTCAATTATTTGAATTTTTTGCCAAAACCATGATTTTTTTAAATTCACATCTTTTTTGAAAATCATGAACCTTTTTCAAA
TTCACGATATTTTTTCCGATTTTCAAATCCTTGGCAGCACCGAGCGGGCAGCCAACATGGACGAACTACTCGGCTGACCT
CTACCGACTGGATTTGAATGCACTAGGTACGTCCATACTACTTCATAAGTGTAGCCATGCATGCATGCATCAACCTTTTT
GCTGACCCTAGTCATGGCGAACTGCTACTGCATGCAGTTCAGTAACTAGCCGGCTCGCGGCAGGTGGGTTGTTAATTAGC
TAGGTTGCCAGCCGTCGAGCTCGGAGTCTCGGACGGTGCGTGGCCGCCTATAAATACCCCGGCCGGGAGTCCCTAGATCC
ATGTCCACACCACCATTGCACCACTCCATCACACTCAACACCTGACACTGCGAGAGTGAGGAGTAGACCAAGGACGACGG
CCATGGCGATGAGGAAGGAGGTCCTCCTGGCGGCCATGATGCTGGCGCTGGTGGTGGCGGCGCCGGGCGGGGCGCATGCG
GCGTGCGAGGTGGGGCAGCTGACGGTGTGCATGCCGGCGATCACCACCGGCGCCAAGCCAAGTGAGGCGTGCTGCGGCAG
CCTCCGCGCGCAGCAGGCGTGCTTCTGCCAGTACGCCAAGGACCCCTCCCTCGGCGCCTACATCAGGAGCCCCCACGCGC
GCGAGACCCTCGTCTCCTGCGGCCTCGCCGTCCCGCACTGCAGCTAGGCGCCAGCTCGCCTAGCGCGTATGGCTCAGCTA
TAGGTAGGCCACCTCCGTCCATGAGAGACGAGAGACTATAGCTTAGCCTAGCTGAGTGCGTGATGCGTCCATGCACGCAT
>chrUn_492
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----------------------TCACCTACCTTTGGATGCCTCGCATGAATTCAATGAACTCGTCCGCTAGCTTCCGCGT
--ACCACCCACCGAGCAGAGCCAGCGAGCAACCA--ACACCGGCCAACTACCCACTGGAGTTGAATGCAGGACGTCCAAA
GTAATGCAGGACGTCCAAAGTGTGCCCGTAAACCATTCTGCTGACCGTAGTCATGGCGAGCTGGTGCAATTCAGTGCATG
CTCTAGCTGTAGGGTAGAGTGTTCAACTGATTGTTACAGCGGCCGTGGGCGATTCATTAGACGGCTCCCGGCAGGTGAGT
GGTTCGTTTGCAGTGATGGACGTCCTCGCATTTCACTTATTGCCCCTGCATCTTTCTTTAATCGCTCACCTGCTCCGTCG
GCGGCGATGGCCGCGTACGCTCCCTACGTGTCGCCGCATGGCATGCACATGG--------CCG----GCTCGGGCCA---
-CGGCGATGCGTGGCTAGCTATAAATAGCCCAGCCGGGAGCTCCTAGATCGATCT-CCACACAACTACCAGTACACTCCA
CTCCCATCACACACACGGACACACCT------GC------GAGAGCGTGAGCCATGGCGTCCATGGGGAAGAAGCAG---
---GTGGTGGCGGCGCTGATGCTGGTGCTGGTGGTGCTGGCGGCGGCGCCGGGCGGGGCGCACGCGGCGTGCCAGGCGTC
ACAGCTGGCGGTGTGCGCTTCGGCGATCCTGTCCGGGGCCAAGCCGAGCGGCGAGTGCTGCGGCAACCTGCGGGCGCAGC
AGCCGTGCTTCTGCCAGTACGCCAAGGACCCCACCTACGGGCAGTACATCCGCAGCCCCCACGCGCGCGACACCCTCCAG
TCCTGCGGCCTCGCCGTCCCGCACTGCTAGGCGCCGGCAGGCCCCTGGCGCACATGGCAAGCTAG-CTGCCTCAGTGACC
ATGAGAGCGTCAGACTATAGCTAGCCTAT-CTGAGTGCCTACGTGTTG---CGTCCATGAAAGCATCTTCCTGTCA----
ACCATGTGGTTCGACTTTGATGATGCTGGAATAAAAATATAAAATGTTGGGTGATGATCTACGGCAGCCATGTTGCTTCT
TGGCTGCTGCTGCTGGTA--ATAAAATTTGTGTTGCAAC-TTGATGAGATCGGCTGAGTTGTGT----------------
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>SNPs
SSSSSSSSSSSSSS--------S---S--------------SSS----------------------S-------------
-------------------------------S-------------------------S-----------------S----
---------SSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------SS---------------
---------------------------------------------------------------------------S----
SS------------------------------------------------------------------------------
-------S--------------------------------------S---------------------------------
--------------------------------S--------------------------------------------S-S
S----SS------------------------S--S--S---------SS-------------------------------
---------------------------------------------------------------SSSS-------------
----------------------------------------------------S---S----------------S------
S-----------------------------------------------------------------------S-------
-----S---S-----------S----------------------------------------------------------
------------------------------S-------------------------------------------------
-----------------------------------------------------------------------------SS-
----------------------------------------------------------S------------S--------
S------S------------------------------S----------------------------------SS-SSSS
--S----------------S--S-S------------------------S----------S-------------------
------------------------S--------------S------------S-----------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SS--------------------
S---S--SS---------S-----S--------S--SS-------S--------S----------S---S----------
--------SSSSSSSSSSSSSSSSSSSSSSSSSS---S-S----------S-----SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
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-S----S----------S---S--------S---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---SS-----S---S--S---S------S-------------------S---S-S--
---------------------------SS--S-S----------S--S-----SSSSSSSSS---------S-S------
S--SSS--S--------S-S----------S-------------------------------------------------
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>forward_112
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------------AGAGACTAGCGCACCACAAG------------------------------------------------
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>reverse_2420
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-------------------CCGGATTCAAGTCACGGAGT-----------------------------------------
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