>input_sequence_84757
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------------------------ATGGGATTCATCATGGAGTTCGCGGAGAACCTGGTCCTGCGGCTGATGGAGGACCC
GGAGCAGCGCGACGAGGCGCAGCGGGCGCACGTCTACCGGATGAAGGAGCGGTGCGAGCGCACCAAGGCCGCCTGGGCGC
TCCCGCTCCGCCCCTACGGCTTCTGGACCTTCGACCGCTTCAACTCCCAGCTCTCCTGGGACCCCCAGATCAGCCAGGCC
GCCGGCCGCCGCGACCCCTACGACGACCTCCTCGCCCGCCACGCCGGCCCCGCCACGCCCTCCTCCTCCTCCTGA-----
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>chr4B_1_TraesCS4B01G029000
GCTTCTCCCTTTCCAGCAGAAATATGATGTACTGCAGCTGTAGCAGGAATAGGTCTGATGTCTTTCCTGGTGTATAAACT
AACCTTATACTAGAAGCTAATGTAACAACTAAGGACATGTTTGATTTGTAGCCACAGTTGTGATGTGCCACACCTTTTTA
ACATCTGACCTTGCTTGTGATAAAATCGTTTTCTATCCAACCTTTTTCTGCAGGTGTGACGACCATTTTTGTCTGCCACA
AAAAATGGTGGTTTTGCCATGGTTGTGGCACAAAAAGTGTGGAAGACAATCAAACATGCCGTTGCCATTTCACTTTTTTG
GATCATTCCCTACCGTCTTGAATTTCTGGGGGCAGTGGTAAGAACCATCTGCAACAAACTGAGATGGAAAGAACGAAATG
TTCGCAACAAGTCGTTGACTATATTGGAATTTGGAAACAACACCTGACAATGGCTCTGAATAAATATGAGCTGAATTTCA
AGATGTTATGCCGGCTCAGTCTTTCGGAGGTGCTCATATTGGTAGGGTGTGCGTGTGTGCGTTCATAGGGGTGAGTGTAT
GCGTGTGTATATGAGTGCTTGTGTCTGTACTGATGTTAAAAAAAATGAGCTGCACCATTTTTTCCGAAACATAGTATTAT
TTATTTCTAGAACATGAAAAAAACGATTCTCACATTTTCTTCGTTTTTTAGCATTACTTTTTCTTCAGTCTCCATAAAAA
CTTTTTCTTCGGTTTTTTTAGGGGTG-CTATTTCTTCAGTATTTTTAGGG---GATCTTTTCCTCGGTTAAACAGAACTG
AAAATGAGCGGATTAGGCTACCA----------------------TCCGGCCCAAAAAATGTTGGGCTGGGCCGG-----
---TCATCACCTGCTGCAAATCCACGTTGACATCGCCGCCGGCCACGCACCCACCCACCACCATCCCTAACCACGAGACG
CCTACCGGGCCGGAGGAAGAAGACATTTCCTCAGATCGC------------------------------GAGCGAAAGAG
AGAGCGAGAGGAGCCTCGGCCGCCATGGGATTCATCATGGAGTTCGCGGAGAACCTGGTCCTGCGGCTGATGGAGGACCC
GGAGCAGCGCGACGAGGCGCAGCGGGCGCACGTCTACCGGATGAAGGAGCGGTGCGAGCGCACCAAGGCCGCCTGGGCGC
TCCCGCTCCGCCCCTACGGCTTCTGGACCTTCGACCGCTTCAACTCCCAGCTCTCCTGGGACCCCCAGATCAGCCAGGCC
GCCGGCCGCCGCGACCCCTACGACGACCTCCTCGCCCGCCACGCCGGCCCCGCCACGCCCTCCTCCTCCTCCTGAAGACC
GAATCCGGTGCGTCACCTCCCCTCCCCTCCCCTCCAGCCAGATCTACATACCCGCTTGTTGCTCCCGCCGTCCATGTTGT
CGTGCCCGCGGTCGTCTCTGCCTGCGTAGGGAGGGATTCGATTGATATGCCGTCCATGTTACCGCGTCCGCAGTCGTCTC
TGCCTGCCTAGGAATTCGATTGATAGCGCAGGCGGATTCGAATGCGGGGATCCGTGGAGG---AGAATTCGATGTTCTGC
GGCCGTAGGTTCGAAAAATGCTCCAGCTAGGTTTAGTTTAGTTTAGGCTGCATAGTTTGGTATTGTAGGTTAGTATTGT-
--------CAGATTTTGGGTGCTGCTGCGGTGAAGGGCGGAGTAGTTCATATGGCTTGCCGCTCAGTTGATTC-GCGAAA
CTGCAGTGGGTCGCCTTATCTTACACCTGCTATTCATTGGGTA-------------------------------------
-------------------------------------TCTGTTGGTAGGAGAAGCCTTCGGTGGAGTTTTGCTTCAAGTT
TTGATGAGTTAGGCTTTGTGTTTCCCCAGCCTCTGGCGTTCTGTTAACATAGTGTGTTTCGTGTTGCTGTCTGGATCCCC
AGTCCTGTTTAA----TGTTTCGTGAGTGGCGAGAAAGCCGGTACACATGCTTGAACATTCAAAGTATGCCGGCCGCCCC
CTTTCAATGGTTTGTACTTCTCGTTAGGCTGTTTTGATTTTGTTGAATTCTCAGCCTTTTATTTAGTTTTCGTTATGCGA
TTGCCTCACTGGGCCACTGGAGCATTTCGGCCTCACATG--------------------------------------TAC
CACGGCATGCTTGAGGAATCATGTAAGTAGACTCCAAAAATGTTGGTGACATTGTTCTGGAGAGTCGAAGGATTTAGATA
ATGCTTACTTCAAACTTGTAGGTTCTATCCATCTATGTACTTGGTTC---------------------------------
---------------------------------ATGTATCAGACTTTATTCTGTAACCTTAGGTCC--------------
----------TCTGTTAACCAAAGCGGGTGACAGATAAGTATATTCACCCGAATTTAGCAACTTGCTGGTTGTCAAGGTT
CTAGTTCATACATG
>chr4D_720
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-------------------------------------------------------------------------------A
CTTTTTCTTCGG--TTTTTTAGGGGTATTTTTTCTTCGGTTTTTTTTGAGGAGGACTTTTTCTTCAGTTAAACAGAACTG
AAAATGAGCGGACTAGGCTAGCTTCCGACCGCTCGGTATATCACCGTCCGGCCCAAAATTGTTGGGCCGGGCCGG-----
---TCATCA---TCTGCAAATCCACGTTGACATCGCCGCCGGCCATCCACCCAC---CCACCATCCCTAACCACGAGACG
CCGACCGGGCCGGAGGAAGAAGACATTTCCTCAGATCGACCCCCCTCGCGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAG
CGAGCGAGAGGAGCCTCGGCCGCCATGGGATTCATCATGGAGTTCGCGGAGAACCTGATCCTGCGGCTGATGGAGGACCC
GGAGCAGCGCGACGAGGCGCAGCGGGCGCACGTCTACCGGATGAAGGAGCGGTGCGAGCGCACCAAGGCGGCCTGGGCGC
TCCCGCTCCGCCCCTACGGCTTCTGGACCTTCGACCGCTTCAACTCCCAGCTCTCCTGGGACCCCCAGATCAGCCAGGCC
GCCGGCCGCCGCGACCCCTACGACGACCTCCTCGCCCGCCACGCCGGCCCCGCCCCGCCCTCCTCCTCCTGAGA---ACC
GAATCCGGTGCGTCACCTCCCCTCCCCTCC-----AGCCAGATCTACGTACACGCCTGTTGTTCCTGCCGTCCATGTTGC
CGTGCCCGCGGTCGTCTCCGCCTGCCTAGGGA------------------------------------------------
--------------TTCGATTGATAGCGCAGGCGGATTCGAATGCGGGGATCCGT---GG---AGAATTCGATGTTCTTT
GGCCGTAGGTTAG------GCTCTAGCTAGGTGATGTTTAGTTTGGGCTGCATAGTTTGGTACTGTATTGTATAAGTTAT
TAGTATGCCAGATTTTGGGTGCTGCTG-GGTGAAGGACGGAGCAGTTCATATGGCTTACCATTTAGTTGATTTTGCGAAG
CTGTACTGAATCGCCTTTTCTC-CACCAGTTATCCATTGTGAATATTACCGAAAACATTGTTAGAATACTTCTACGAGAG
GGTTTTATTGGGCTGAGATGCTAGTACATTACTTTGGTCCGCTGGTTGGAGAAGCTTTTAGTGGGATTTTGTTTCAAGTT
TTGATGAGTTGGGCTCTGTGTTTCCCCAGCCGCTGGCGTTCTGTTAACATAGTGTGTTTCGTGTTGCTGTCTGGATCTCC
CATCCTGTTTAATGTTTGTTTCGTGAGTGGTGAGAAGGCCGGTATGCATGCTTGAACATTCAAAGTATGCCGCCTTGCGA
TAGTGTGCG-------CTTTTCGTTGGGCTATTTTGATTTTGTTGAATTCATCAGCC-TTAATTCGTTTTTGTTATGCAA
TTGCCTGACTGGGCTACTGGATCATTTCTGTCTCACATGGAAACTGCACTCATTGAGATGTTCTAACAGTCTGGGTGTAC
TAGAGCACTCTTGAGTAATCATGC-------------AAATGTTGGTGACATTGTTCTGGAGAATCATGGATAGATAATA
---CTTTCTTCAAACTTGTAGGTTCTATCTATCTATGTACTTGGCTTAGATCACTTTAGATCACTTTATCTATGTACTTG
ATTCTATCTATCTATCTATCTATCTATCTATCTATGTACTTGACATTATTCTGTTACCTTAGATCACTTTTTTTTGCGGA
GGTTAGGTCTTCTGTTAACCAAAGCGGGTGACAAATAAGTATGTTCACTTGAATTTAGCAACTTGCTGGTTGTCAAGGTT
CTAGTTCATACATG
>chr4A_725
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----TTCTTCAGTTTTTTTAGGGGTGACTTTTTCTTCAGTTTTTTTAGTT---GACTTTTTCTTCAGTTAAACAGAACTG
AAAATGAGCGGACTAGGCTAACTTCTG----------ATATCACCTTCCGGCCCAAAACTGTTGGGCCGGGCTGGGCCGG
TCATCATCT---GCTGCAAATCCACGTTGACATCGCCGCCGGCCA----CCCAC---CCACCATCCCTAACCACGAGACG
CCGACCGGGCCGGAGGAAGAAGACATTTCCTCAGATCGCCCCCCCTCGCGAGCGAA------------------------
--AGAGAGAGAAGCCTCGGCCGCCATGGGATTCATCATGGAGTTCGCGGAGAACCTGATCCTGCGGCTGATGGAGGACCC
AGACCAGCGCGACGAGGCGCAGCGGGCGCACGTCTACCGGATGAAGGAGCGGTGCGAGCGCACCAAGGCGGCCTGGGCGC
TCCCGCTCCGCCCCTACGGCTTCTGGACCTTCGACCGCTTCAACTCCCAGCTCTCCTGGGACCCCCAGATCAGCCAGGCC
GCCGGCCGCCGCGACCCCTACGACGACCTCCTCGCCCGCCACGCCGGCCCCGCCCCGCCCTCCTCGTCCTGAAAT---CC
GAATCCGGTGCGTCACTTCCCCTCCCCTCC-----AGCAAGATC----TACATGCTCGTTGTTCCTTCCGTCCATTTTGC
CGTGTCCGCAGTCGTCTCTGCCTGCCTAGGGAGGGATTG-----------------------------------------
-----------------GATTGATAGCGCAGGCGGATTCGAATGCGGCGATCCGT---GGAGGAGAATTCGATGTAGGTT
AG--------------AATGCTCCAGCTAGGTGTCGTTTAGTTTGGGCCGCATAGTTTG-----GTATTGTATAAGTTAT
TAGTATGCCAGATTTTGGGTGCTGCTG-GGTGAAGGACGGAGCAGTTCATATGGCTTACCATTTAGTTGATTTTGCGAAG
CTGTACCGAATCGCCTTATCTC-CACCGGTTATCCATTGTGAATATTACCAAAAACGTTGTTAAAATACTTCTACGAGAG
GGTTTTATCGGGCTGAGATACCAGTATATTACTTTAGTCCGCTGGTTGGAGAAGCCTTTAGTGGATTTTTATTTCAGGTT
TTGATGAGTTAGGCTTTGTGTTACCCCAGCCACTGGCATTCTGTTAACGTAGTGTGTTTCGTGTTGCTGTCTGGATCTCC
AGTCCTGTTTAATGTTTGTTTCGTGAGTGGTGAGAAGGCCTGTAGGCATGCTAGAACATTCAAAGTACACTGCCTTTCGA
TAGTGTGCG-------CTTTTCGTTGGGCTGTTTTGATTTTGTTGAATTCATCAGCC-TTAATTAGTTTTTGTTATGCAA
TTGCCTGACTGGGCTACTGGATCATTTCTGTCTCACATG--------------------------------------T--
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----------------------------S----------S-------S------SS-----S--S--------------
------------S-------S-S-----------------------S-S-S--S----S--------S------------
---------SSS---------------------------------SS-------SSS-----------------------
--S---------------------------------------------------------------------S--S----
S--------------------------------------------------------S----------------------
---------------------------------------------------------------------S----------
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------------------------------------------------------S---------------SSSSSSS---
------------------------------SSSSS------------S---S---------S---S-------------S
-------------------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----------------------------------------SSS--------------------SS
-----------S-SSS----------------S-S---------S-----------------S----SSS--SS-S-SS-
---------------------------S--------S-----S--------------S--SS-S--------S------S
---S-S--SS-----------SS----S-S---S-----S-S--------------------------------------
---------------------------------------S-S----S-----------SS-----S-----S--------
-------------------------------S---------------------------------------------S--
------------------------------S-----S-------SS--------------------------S-SSS-SS
SSS-SSSS-SSSSSSS---S-----S------------------------SSSSS-SS---S--------S-------S-
------S-------S------S------S-S-------------------------------------------------
S-SS---SS------S-------SSSSSSSSSSSSSS--------------------------S--SSS-SSSSSSS---
SSS---S----------------------S--------------S-S---------------------------------
--------------------------------------SSS---S---------S-------S--S--------------
---------------------------------S--------S-----SS------------------------------
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>forward_851
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-------------------------------GGATTAGGCTACCATCCGGC-----------------------------
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>reverse_2037
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------------------------------------AGCCGGTACACATGCTTGAA------------------------
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