>input_sequence_84728
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----ATGTTCGATAAGAACGACGGCGGACGCACGGCCTTCCTGACAAGGGTTGTCCACAGAGCGGTGGTCAAGGTGAACG
AGCAAGGCACGGAGGCAGGCGCGAGCACAGCTGGCATGCGTGGTGGCGGCCTGCCGCCCAACGTTGTGGAGTTCGTCGCC
GATCATCCGTTCACCTTCCTCATCATGGAGGAACAGTCCGGTGTCATCGTCGATCATCCGTTCACCTTCCTCATCATGGA
GGAACGGTCCGGTGTCATCGTCTTCGCTGGCCACGTCCTTGATCCGACCAAGTGA-------------------------
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----------------------------------------------
>chr2A_1_TraesCS2A01G023300
GATCCGCCAATCAGTGATTTTTACAAAAAGATTACACAAGAGATGATGCAATTTGTCAAGAAAATGTAACCTAGTGTTTT
CTGAAACCCTAGCCCTCAAAGTGATGGTTTTCTGCAACCTAGTGCACGCACCGTGAGCTTCCCCAGCGAGGTACCTAAAT
GTCAGATTTAATCTCGACAAGTTACTCTTCCATGTTTAGTAGCTCACTGGCGGTGCTATGAAATATATATGTGACGTGCA
GCCGGAGGAAGTTGTGGAGACGATCAACGAACATGTGAAGAAGGCCACCAACAACCTCATCACCTCTATCATCTCAGCTA
CGGATGTCGACGCTGAGACCGATCTGGTGCTCGCCAACGCCGTCTACTTCAAGGGAGCGTGGCTCAAGCAGTTCGGCT--
-----------------------CCGGCTCGACGGCAGTCCTGTCGAGGCGCAGTTCATGTCCATGTACTTCCCCCACTA
TGCCTCCTGTATGGACGGGTTCAAGGTCCTCAGGCTCCCCTACAGGCCTAACATTGGTGCCGATCGCTGGAATAAGTTGT
TAGAGTTGAAACAGAAGTTTCCGACGGCGCCTCTGAG-------TTTCCAAGGATTCGCGTCGGACATGCCACTGTATCT
TCGTGCGAATGTTCAAAACACTGACAGTCGCAGACATAGCATCAATAATGTGATCAAAACTTTTCTTCTGGTCATTCACT
A-------------------------------------------------------------------------------
-------------TTATTTTTGTTTTTAATAATGTCTCTTACGCAATCAACCTTCTGTTGTCCATGCAGGCTCCAGACGC
CGATGTTATGCAGTTCTCCATGCTCATCTTCCTCCCGGACGAGCGCCACGGGTTTGCCGCCATGGTGGACATGATCACCG
CGGCGCCAGGTTACCTCTACAGAATCCTGCCCAGGAGGCAGCCCGATCTCACCATCATCAAGATGCCCAAGTTTGAGATA
AGCTTCGACTGGAACCTCGAAAGCGACCTGCGTCGGCTGGGCCTGTCGCTGCCATTTTCGCCGGAGGCGGCCGACTTGCG
TGGCATGTTCGATAAGAACGACGGCGGACGCACGGCCTTCCTGACAAGGGTTGTCCACAGAGCGGTGGTCAAGGTGAACG
AGCAAGGCACGGAGGCAGGCGCGAGCACAGCTGGCATGCGTGGTGGCGGCCTGCCGCCCAACGTTGTGGAGTTCGTCGCC
GATCATCCGTTCACCTTCCTCATCATGGAGGAACAGTCCGGTGTCATCGTCGATCATCCGTTCACCTTCCTCATCATGGA
GGAACGGTCCGGTGTCATCGTCTTCGCTGGCCACGTCCTTGATCCGACCAAGTGATTGGCATCAATAAGTATGAAATAAG
CTGAAAGTAGTAGCTCGGACCAGCTGGTTAGCTTGTACCGTTTCGTTTGCAAGATTCGTGTTCTCTTTTTGCGAGCATCT
CCTTGGACGCCCCGAACTATCTCGGCTCTATAATTCGTCTTCTCTTTTTTGCAACATTAACCCTGAGATTTAGCTGCTAG
TACTACCTTTGAACTACCAAAACGTCTTATATTAGTGTATATTGGGAGTATTTACTGGCTAGTAACTACTCCCAGTGTAA
ACAAATATAAGACGTTTTAGATCACTTTGCTGAATGCACTTTACATTTTGGTTATTCTTCATTGTGCTTGTGCAGTCCTA
TCCTGATTTTTTTATTAATAATAAATGATAATTCAATTATTCCAAAACTGGTAAAGGTAACTTGAAATTTTGAAAAA-TG
GGAAGTACGCTATGAGTAACGGCGTCCAGGCTGGCCCAGTCGCTATTGTGAACCATGTCCAGGTCTGGACGCTAGTGTTA
GTCGCGTACAATGCATGATTGAACCAA---CCCAG-----GAATCCCTGAATCGGCTGTCCCCAACCTAATCAGCTTGCT
CGTTCAAAGAAATGTCGATTGGTGGATCGTAACAGCGAGCGGCCGGTGAGACCATGTCTCTCATGTGATGATTGGCGTTG
TCGGCTGTCATGTCCCGAATGCAACGTCACACTCATGCTATGGCCAAGCATGCTGAAGCGGAACGAGCAACGCAAGAACA
ACGACTGACCAATAACGTGCATTCTTGATGAAACTAAAGATGGCCCGAGCGGT--------GCACTGGTAATGAGTGGGT
CAGAATCTTAGAAGATGGATATGCAAGTTAATTATGTTGTTGACGTGGCTATTAGTAGTGTCGCTCTTATTCCTATAACG
AATGTGAAGGACCTTGACAAGGGTTAGAGCATTTCTCT------------AACCGGTTAGAAAAGT--AAAAATTCGGCC
TTACTTCTCTAACCAGGACCTAACTTATCCCGTAACTCCTATAGTG
>chr2B_230
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TGTGATGTGCA
GCCGGAGGAAGCTGTTGAGACGATCAACGGACGTGTGAAGAAAGCCACCAACAACCTCATCAGCTCTATCATCTCACCTA
CGGATGTCGACGCTGAGACCGATCTGGTGCTCGCCAACGCCGTCTACTTCAAGAGAGCGTGGCTCAAGCAGTTCGGCTCT
TACACGAGCCCGGGCACGTTCCACCGGCTCGACGGCAGTCCTGTAGAGGCGCAGTTCATGCCCATGTACTTCGGCCATTA
TGCCTCCTGCATGGACGGGTTCAAGGTCCTCAGGCTCCCCTACAGGCCTAACCTTCCTGCCGACGTCTGGGAGAACAAGT
TAGAGTTCAAACGGAAGTTTCCGACGATGCCTCTGAGTTTCCACTTTCCAAGGATACGCGTCGGACAGGCCGCTGTATCT
TCCTGCGAATGTTCAAGACACTG---------------GCATCAATAAGGTGATCAAAACTTTTCTTCTGGTCATTCCTT
TGTTATTTTCATTTTTAATAAGAGTCAATTACATTAGTGGTGTCACAACTTGCCATGAATGTGTATTTTGGTGCTACAAC
TTGTCATTCCTTGTTATTTTTAGTTTTAATAATGTCTTTTACGCAATCAATCTTCTGTTGCCTGTGCAGGCTTAAGACGC
CGATGCCATGCAGTTCTCCATGTTCATCTTCCTCCCGGACGAGCGCCACGGGTTTGCCGCCATGGTGGACATGATCACCG
CAGCCCCAGGTTACCTCTACAGCATCCTGCCCAGGACGACGCCTGATCTCGTCATCCTCAAGATGCCCAAGTTTGAGATA
AGCTTCGACTGGGACCTCGAAAGCGACCTCCGCCGGCTGGGCCTATCGCTGCCCTTTTCGCTGGAGGCGGCCGACTTGCG
TGGCATGTTCGATAAGAACGACGGCAGGGGCACGGCGTTCCTGACCAAGGTTGTCCACAGGGGCACGGCAGGG-------
-GCAAGGCACGGAGGCAGGCGCGAGCACAGCTAGCATGCGTGGTGGCGGCCTGCCGCCCAAGGTTGTGGAGTTCGTCGCC
GATCATCCGTTCACCTTCCTCA---------------------------------------------------TCATGGA
GGAACGGTCCGGTGTCATCGTCTTCGCTGGCCACGTCCTTGATCCCACCAAGTGATTGGCAATTTGGCATC---AATAAA
CTGAAAGTAGTAACTCG---------------------------------------------------------------
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----------------------------------------------
>chr2B_230
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---------------------------------------------------------------------TGTGATGTGCA
GCCGGAGGAAGCTGTTGAGACGATCAACGGACGTGTGAAGAAAGCCACCAACAACCTCATCAGCTCTATCATCTCACCTA
CGGATGTCGACGCTGAGACCGATCTGGTGCTCGCCAACGCCGTCTACTTCAAGAGAGCGTGGCTCAAGCAGTTCGGCTCT
TACACGAGCCCGGGCACGTTCCACCGGCTCGACGGCAGTCCTGTAGAGGCGCAGTTCATGCCCATGTACTTCGGCCATTA
TGCCTCCTGCATGGACGGGTTCAAGGTCCTCAGGCTCCCCTACAGGCCTAACCTTCCTGCCGACGTCTGGGAGAACAAGT
TAGAGTTCAAACGGAAGTTTCCGACGATGCCTCTGAGTTTCCACTTTCCAAGGATACGCGTCGGACAGGCCGCTGTATCT
TCCTGCGAATGTTCAAGACACTG---------------GCATCAATAAGGTGATCAAAACTTTTCTTCTGGTCATTCCTT
TGTTATTTTCATTTTTAATAAGAGTCAATTACATTAGTGGTGTCACAACTTGCCATGAATGTGTATTTTGGTGCTACAAC
TTGTCATTCCTTGTTATTTTTAGTTTTAATAATGTCTTTTACGCAATCAATCTTCTGTTGCCTGTGCAGGCTTAAGACGC
CGATGCCATGCAGTTCTCCATGTTCATCTTCCTCCCGGACGAGCGCCACGGGTTTGCCGCCATGGTGGACATGATCACCG
CAGCCCCAGGTTACCTCTACAGCATCCTGCCCAGGACGACGCCTGATCTCGTCATCCTCAAGATGCCCAAGTTTGAGATA
AGCTTCGACTGGGACCTCGAAAGCGACCTCCGCCGGCTGGGCCTATCGCTGCCCTTTTCGCTGGAGGCGGCCGACTTGCG
TGGCATGTTCGATAAGAACGACGGCAGGGGCACGGCGTTCCTGACCAAGGTTGTCCACAGGGGCACGGCAGGG-------
-GCAAGGCACGGAGGCAGGCGCGAGCACAGCTAGCATGCGTGGTGGCGGCCTGCCGCCCAAGGTTGTGGAGTTCGTCGCC
GATCATCCGTTCACCTTCCTCA---------------------------------------------------TCATGGA
GGAACGGTCCGGTGTCATCGTCTTCGCTGGCCACGTCCTTGATCCCACCAAGTGATTGGCAATTTGGCATC---AATAAA
CTGAAAGTAGTAACTCGAAC------------------------------------------------------------
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>chr1A_1637
TCCGA---------------------------------------------------------------------------
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------TTTTTCTATTAATAATAAATGATAATTCAATTATTCCAAAACTGATAAAGGTAATTTGAAATTTTGAAA-AATG
GGAAGGACGCTATGAGTAACAGCGTCCAGGCTGGC-----CGCTATTGTGAACCATGTCCAGGTCTGGACGCTAGTGTTA
ACCGCGTCCAAAGCATGATTGAACCAA---CCCAGACCAGGAATCCCTAAATAGGTTATCCCCAACCTAATCGGCTTGCT
CGTTCAAAGAAATGTGGATTGGTGGATCATAACAGTGAGTGGCCGGTGAGACGATGTCTCTCATGTGATGATTGGCG---
---GCTGTCATATCCTAAATGCAAAAACGCACTCATGCTATGGCCAAGCATGCTGAAGCGGAATGAGCAGCGCAAGAGCA
ACGACTGACAAAGAACGCGCATGCCTGATGAAACTAAAGATGACCCGAGCGGT--------GCACTAGTAATGAGTGGGT
CAGATTCTTAGAATATGGATATGCAAGTTAACTGTGTTGTTGATGTGGCTATTAGTAGTGTCGCTCTTATTCCTATAACG
TATGTGAAGGACTTTGATAAGGGTTAGAGCATCTCTAGACGATCCCCCAAAACCGATTAGAGAAAT--AAAAATCCGGCC
TTACTTCTCTAACCAGGACCTAACTTACCCCGTAACTCCTATAATG
>chr7B_1641
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----GATTTTTTTATTAATAATAAATGATAATTCAATTATTACAAAACTGGTAAAGGTAACTTGAAATTTTGAAAAAATG
GGAAGGACGCTATGAGTAACAGCGTCTAGGCTGGC-----CACTATTTTGAACCATGTCCAGGTTTGGACGCTAGTCTTA
GCCGCGTCCAATGCATGATTAAACCAA---CCTAGACCAGTAATCCATGAATCGGCTGTCCCCAAGCTAATCGGCTTGCT
CGTTCAAAGAAATGTCAATTGGTGGATCATAACAGCGAACGGTCGGTGAGACAATGTCTCTCATGTGATGATTGGCGTTG
TCGGCTGTCATGTCCCGAATGCAACGTCGCACTCATGCTATGGCCAAGCATGCTGAAGTGGAACGAGCAGCGCAAGAACA
ATGGCTGACAAAGAACGTGCATGCCTGATGAAACTAAAGACGACCCAAGCGGT--------GCACTGGTAATGAGTGGGT
CGGATTCTTAGAAGATGGATATGCAAGTTAACTGTGTTGTTGATGTGGCTATTAGTAGTGTCGCTCTTATTCCTATAACA
TATGTGAAGGACCTTGATAAGGGTTAGAGCATCTCTAGCTAATCCCCTAAAACAGGTTAGAGAAGT--AAAAATCCGGCC
TTACTTCTCTAACCAGGACCTAACTTATCCCGTAACTTCTATAGTG
>chr4D_1641
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----GATTTTTTTATTAATAATAAATGATAATTCAATTATTCCAAAACTAGTAAAGGTAACTTGAAATTTTGAAAAA-TA
GGAAGGACGCTATGAGTAACAGCGTCCAGGCTGGC-----CGCTATTGTGAACCATGTCCAGGTCTCGACGCTAGTGTTA
ACCGCGTCCAATGCATGATTGAACCAACGACCCAGACCAGGAATCCCTGAATCGGTTGTCCCCAACCTAATCGGCTTGCT
CGTTCAAAGAAATGTGGATTGGTGGATCATAACAGCGAGTGGCCGGTGAGACGATGTCTCTCATGTGATGATTGGCGTTG
TCGGCTGTCATGTCCTGAATGCAACGACGCACTCATGCTATGGCCAAGCATGCTGAAGCGGAACGAGCAGCGCAAGAACA
ACGGCTGACAAAGAACGCGCATGCCTGATGAAACTAAAGACGGCCCGAGCGGT--------GCACTAGTAATGAGTGGGT
CAGATTCTTAGAATATGGATATGCAAGTTAACTGTGTTGTTGATGTGGCTATTAGTAGTGTCGCTCTTATTCCTATAACG
TATGTGAAGGACCTTGATAAGGGTTAGAGCATCTCTAGCCGATCCCCTAAAACCGGTTAGAGAAGT--AAAAATCCGGC-
---CTTCTCTAACCAGGACCTAACTTATC-----------------
>chr3A_1641
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----GATTTTTTTATTAAAAATAAATGATAATTCAATTATTCCAAAACTGGTAAAGGTAACCTGAAATTTTGAAAAA-TG
AGAAGGACGCTATGAGTAACAGCGTCCAGACTGGC-----CGCTATTGTGAACCATATCCAGGTCTGGACGCTAGTGTTA
GCCGCGTCCCATGCATGATTGAACCAA---CCCAGACCAGGAATCCCTGAATCGGTTGTCCCCAACCTAATTGGCTTGCT
CGTTCAAAAAAATGTCGATTGGTGGATCATAACAGCGAGCGGTCGGTGAGATGATGTCTCTCATGTGATGATTGGCGTTG
TCGGCTGTTATGTCCCGAATGCAACGTCGCACGCATGCTATGGCCAAGCATGCTGAAGCGGAACGAGTAGCGCAAGAACA
ACGACTGACAAAGAACACGCATACCAGATAAAACTAAAGACGGCCCGAGTGCACCAGCGAAGCACTGGTAATGAGTGGGT
CAGATTCTTAGAAGATGGATATGCAAGTTAACTGTGTTGTTGATGTGGCTATTAGTAGTGTCGCTCTTATTCCTATAACG
TATGTGAAGGACCTTGATAAGGATTGGAGCATCTCTAGCTGATCCT---AAAACGGTTAGAGAAGTAAAAAAATCCGGCC
TTACTTCTCTAACCAGGACTTAACTTATCCCGTAACTCCTATAGTG
>chr7A_1644
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-------TTTTTTATTAATAATAAATGATAATTCAATTATTCCAAAACTGGTAAATGTAACTTGAAATTTTGAAAAA-TG
GGAAGGACGCTATGAGTAATAGCGTCCAGGCTGGC-----CGCTATTGTGAACCATGTCCAGGTCTGGACGCTAGTGTTA
GTCGCGTACAATGCATGATTGAACCAA---C-----CCAGGAATCTCTGAATCGGCTGTCCCCAACCTAATCAGCTTGCT
TGTTCAAAGAAATGTCGATTGGTGGATCGTAACAGCGAGCGGCCGGTGAGACGATGTCTCTCATGTGATGATTGGCGTTG
TCGGCTGTCATGTCCCGAATGCAACGTCACACTCATGCTATGGCCAAGCATGCTGAAGCGAAATGAGCAGCGCAAGAACA
ACGACTGACCAATAACGTGCATGCTTGATGAAACTAAAGATGGCCCGAGCGGT--------GCACTCGTAATGAGTGGGT
CAGAATCTTAGAAGATGGATATGCAAGTTAATTATGTTGTTGATGTGGCTATTAGTAGTGTCGCTCTTATTCCTATAA-G
AATGTGAAGGACCTTGACAA------------------------------------------------------------
----------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----
-----------S---S-------------S--S---------S-------------------S-------------S---
-----------------------------------------------------S--------------------------
--------------------------------------------S---------------S-----------SS---S--
---------S------------------------------------------S--SS------SSS----S-S--SSS--
-------S----S-------------SS---------------------------S-----------S---S--------
--S-------------S------SSSSSSSSSSSSSSS----------S----------------------------SS-
S-------------------------------------------------------------------------------
---------------------SS--------------S------------S---------S-SS--------SS------
-----SS---------------S---------------------------------------------------------
-S--S-----------------S-------------S-SS---S------SS----S-----------------------
------------S----------------S--S-----------S--------S-------S------------------
-------------------------S-SS-------S--------S-S------------S-SSSS--SSSS-SSSSSSS
S-------------------------------S----------------------------S------------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---------------------------------------------S---------------SSSSSSSS-SSSS-----S
------------S----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------------------------------------------------------------------------
-----S--------------S--------------SSSSS----------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------------------------------------S----------
----------------------S---------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------S---SS-----------------------S------------S-----
----------------------------------------------
>forward_158
--------------------------------------------------------------------------------
----------------------------------------------------------TTCCCCAGCGAGGTACCTAA--
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>reverse_1318
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-------------------------------------CCGGTGTCATCGTCGATCAT-----------------------
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----------------------------------------------
>forward_159
--------------------------------------------------------------------------------
-----------------------------------------------------------TCCCCAGCGAGGTACCTAAA-
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>reverse_1327
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----------------------------------------------TCGTCGATCATCCGTTCACC--------------
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----------------------------------------------
>forward_222
--------------------------------------------------------------------------------
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------------------------------------------CTCACTGGCGGTGCTATGAA------------------
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>reverse_1328
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-----------------------------------------------CGTCGATCATCCGTTCACCT-------------
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----------------------------------------------
>forward_1183
--------------------------------------------------------------------------------
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-------------------------------------------ACAAGGGTTGTCCACAGAGC-----------------
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----------------------------------------------
>reverse_2150
--------------------------------------------------------------------------------
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---------------------------------------------------------------------ACGCAAGAACA
ACGACTGAC-----------------------------------------------------------------------
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----------------------------------------------
