>input_sequence_84708
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------------------------------------------------------------ATGGGCAACGTGGTGGAGGC
CGCGGCGGCCGCGATCTCGCCGGAGCTCGGCGACGCGCTGGCCAAGGTGGCCGTGTTCGCGCTGGTGCAGGGGCTGGTCT
ACCTCATCCTGCGCAAGTCCTCGGACGTCTTCTCCACGGCCAGCGCGGCGAGGTCCCTCAGCTTCCGGCCGATGCGGAGC
ATGAGCGTCCGGCGCGTGCTGGCGGCCTTCTCCGACGTCCCCGTCGGCGTTCCGGATGATGCCGGCTCGTCCGTGGCGCC
GCAGGCCGGTGATGCC------GACCGGCGCGCAGACTAG----------------------------------------
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>chr7D_1_TraesCS7D01G168100
GGTCGTTGTTGAAAAGATTCTCACACAATATTACTCAACAGGCACG-CAAAGCATGTCATTTGTGTTCTTTGGCCGTCAA
TTGATTTTCGAGAA---TTGCAATTCATTTTGCCTCCACGTGGCATGTCTCAC---CCGTGTACACGTCAGGCTGAGGAG
GCAAAGCGATGGCTTTCCTCGGACGATTGACACAAACTGACCACCTTGCGCGGTTTCCCACGAGCAGCTCGC----ATCG
CCTGACTCCTGGTGACTCGCCACTCGCCAGAGCAAATCGCAGACGCTACAGCTAAGCTGCCTTGTGGCAGCAAGCAATGG
ACTTGCGAGCCAAGCAAGCGCGCATGGGGCTGGACGCCATGCACCGC----CGATGAGCATGCAATTGCTTGTCTTGCAA
GAACCGGCCACCG----CCACCACCACCGCGTCCGGGCGGAAAACATGGCCGCCACGTGAGCTCACGTTATCCTGTCGCT
GCATGCCGCCCTGTTAATTCCAGCCATTAGCCAGGGCCCGGCAAGCAAGAAAGCGCCCGAAAATGGTCGATTGCTTTGCC
TTTTTCTCATTTCGAGTCGACCGAGG------------------------------------------------------
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------------------------------------TTAGCCGCAAGCAAATGGATAGTGCGCCTTCGGAGCCAGTGGCC
CTGCTGCTCATGACTCATGCGTGCCA-----------------CCTCAGAGACGATCGCTTCCCAAGGCGGAGTTCAGAG
CGCGTTCGTCCAGACACAGGTCCATGTGACAGAGACACAG--------TACACGATGATGAGCGAAGG------------
----------------------TTCAGATGTGGGAAGAAAACGTGGAGGCTTGCACCACCTCCTACGC-CGCTTGCGTGC
AAGCCTCACACCGCCGGAAAAGCAACTTGACGCAACCCGCATGCCGGCCACCTCTACATATATATAAACAACGACCAATC
GTACACAGGACACAGAAGCGGAGCACATTCTCTTCGACTGTAAGCCACTT-ACACATTTCGATCGCGCCGGTTCGTAGTC
TCGTCGTGA--CATCGTCGGCGGCCAGTTGAGCTGGTTTAGTTGTTG--------GGGGAATGGGCAACGTGGTGGAGGC
CGCGGCGGCCGCGATCTCGCCGGAGCTCGGCGACGCGCTGGCCAAGGTGGCCGTGTTCGCGCTGGTGCAGGGGCTGGTCT
ACCTCATCCTGCGCAAGTCCTCGGACGTCTTCTCCACGGCCAGCGCGGCGAGGTCCCTCAGCTTCCGGCCGATGCGGAGC
ATGAGCGTCCGGCGCGTGCTGGCGGCCTTCTCCGACGTCCCCGTCGGCGTTCCGGATGATGCCGGCTCGTCCGTGGCGCC
GCAGGCCGGTGATGCC------GACCGGCGCGCAGACTAGTTGAAGTGTTTTCTGTGTTGAGCTCATGTACGAGTCAGTG
GCGCGTGCTTTCTTAGTTTCGTAGTTATCGTTGGTAGTGGTTGTTCATAAGAAAGGATTGTACGATGAACATAAGAAAGT
TTGTGTATGTACAGTAGATTGAACTGCAATGGATCGTTCGATTTTAGTTTAAACGAAATCTGCTGCTGTTTCTGGCTGCT
TATCGAGGCCG---ATAGCTGTTGCGTTGTGTTCAGCATGGTTTCAATCTTCAG-AAGGCAGACTCCCCTTTTGCAAGAT
TGCTCCATATATATGGTCCAAAATGCAGCCTCCCTTTGTTTC-------------TTTGGGAGGGAGACAACCAATATTA
CGTGAATTTTTGTATAG-GACACTTAGGATTATGTGAGAATCTTTTCAACAACGACGCTTTGGCCGAGTGGTTAAGGCGT
GTGCCTGCTAAGTACATGGGCTCTGCCCGCGAGAGTTCGAATCTCTCAGGCGTCGATATTTTTTTTCCTATATATTTTGC
CGAATTATTGTTGCTTAAATTG----------------------------------------------------------
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--------------------------------------------AAAGTTGCAACACGAACCGGCATATATGTGCGTGGT
TTGTACGGGATATGGC----------------------------------------------------------------
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---------TTTTTGGCTAAATTTTGGAGAGTAGGTACTCCAGACCTATCCTATA-----GCACAATATGCATAGAGATG
GATCTACTATCCCGCAAAGAAAAGAAAATTTGTTGGCATATGGGCATGGCCGCTACGACATTTTATATAAAAAGATTCTC
ACATAATATTGGCTGTCCCATACCAAAATTGCTTCACTC--TGGCCTGAAATGCAGCCTCCCCTTCTTTTG-GGTAGAGA
GACGGCCAATATAATGGGGCCCGCCTCAATCCTTAGGAGGCCGAGCAATGCTACATTTACATGCAAC-TTTTTACAGACT
TAGTCTTACGGAGAGTGATGGCATTATCAGATTGGAGGGAATGGGCCCCACTCTAGGAATTAGGGAGTGGGATAAATTAG
GTGCTGCCAGCCCTGAATTCCCAGAGTGGTATCAACTAAGTC
>chr7A_2
-GTCGTCGTTGGAAAGATTCTCACATAATCCTACTCGACTTGGTATCCAAAGCATGTCA-TTGTGTTCTTTGGCCGTCAA
TTGCTTTTTC-------TTACAATTCATTTTGCCTCCACATGCCTCACCCGTGTTACCGTGTACACGTCAGCCTGAGGAG
GCAAAGCAATGGCTTTCCTTGTACGATTGACAAAAACTGACCACGAGCA---------------------GC----ATCG
CCTGACTCCCGGTGACTCGCCACTCGCCAGAGCAAATCGCAGACGCTACAGCT-AGCTGCCTTGTGGCAGCAAGCAATGG
ACTTGTGAGCCAAGCATGCGCGCATGGGGCTGGACGCCATAAACCACCGATCGATGAGCATGCAATTGCTTGGCTTGCAA
GAACCGGCCACCG-------CCACCACCGCGTCCCGGCGGAAAACATGGCCGCCACGTGAGCTCACGTTATCCTGTCGCT
GCATGCCGCCCTGCTAATTCCAGCCATTAGCTAGGGCCCGGCAAGCAAGAAAGCGCCCGAAAATGGTCGATTGATTTGCC
TTTTTCTCATTTCGAGTCGATCGAGG------------------------------------------------------
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------------------------------------TTAGCCGCAAGCAAATGGAGAGTGCGCCTTCCGAGCCAATGGCC
CTGCTATCCATGACTCATGCGTGCCACCTCGGAGAGGGTACTCCCTCGGAGACGATCGCTTCCCAAAGCGGAGTTGAGAC
--CGTTCGTCCAGACACAGGTCCATGTGACAGAGACACAA------AGTACACGATGACGAGCGAAGGCAAGGGCAGGCC
ATGAG----------------GTTCAGATGTGGGAACAAAACGTGGAGGCTTGCACCACCTCCTTCGCGCGCTTGCGTGC
AAGGCTCACGCCGCCGGAAAGGCAACTTGACGCAAGCCGCGTGCCGGCCAGCCC----TATATATAAACAACGACCAATC
GTACACAGGGCACAGAAGCAGAGCACATTCTCTTCGACTGTAAGCCACTTTACACAGTTCGAACGCGCCGGTTCGCAGTC
TCGTCGACTGTCATCGTCGGCGGCCAGTTGAGCTGGTTTAGTTCTTAGCCTCTTAGGG-AATGGGCAACGTGGTGGAG--
-GCGGCGGCCGCGATCTCGCCGGAGCTCGGCGACGCGCTAGCCAAGGTGGCCGTGTTCGCGCTCGTGCAGGGGCTGGTCT
ACCTCATCCTGCGCAAGTCCTCGGACGTCTTCTCCACGGCCAGCGCGGCGAGGTCGCTCAGCTTCCGGCCGATGCGGAGC
ATGAGCGTCCGCCGCGTCCTGGCGGCCTTCTCCGACGTCCCTGTCGGCGTTCCGGATGACGCCGGCTCCTCCGTGACCCC
GCAGGCCGGTGATGCTGACCGTGACCGGAGGGCAGACTAGTTGAAGTGCTTT--GTGTTGAACTAATGTACGAGTCAGCG
GTGCGTGCTTTCTTAGTTTCTTAGCTATCGTTTGTAGTGATTGTTCTTAAGAAAGG-TTATATGATGAGCATAAAAAAA-
TTGTGTGTGTACAGTCGATTTAACTGCAATGGATCATTCGATTTTATTTTAAACGAAATATGCTCCTGTTTCTGGCTGCT
TATCGGGTCGATATATAGCTGTTGCTTTGTGTTCAGCATGGTTTCAATCTTTAGAAAGGCAGACTCCCCTTTTGCAAGAT
AGCTCCATATATATGGTCCAAAATGCAGCCTCCCTTTGTTTTTTGTATATTTTTTTTTGGTAGAGAGACAGCCAATATTA
GGTGAATTTTGGTAGAGAGACATGTAGAGTTATGTGAGAAATTTTCCAAAAACGACGCTTTGGCCGAGTGGTTGAGGCGT
GTGCCTGCTAAGTACATGGGCTCTGCCCGCGAGAGTTCGAATATCTCAGGCGTCGAA-----TTTTTTTCTCTATTTTGC
TAAATCTGTCGCATGATTTATCAGAACGAAGATAGTAATAATAATGATTAAAAAGTTGCAACATGAACCGGTATATATGT
GCATGATTTTTTTGGGAAATATCCAACTTGTTTTCACTAATTACACCAGACATATTCTATATTGTCGCACAGCTAAATCT
GTCGCATGATTTATCAGAACGAAGATAGTAATAATAATGATTAAAAAGTTGCAACATGAACCGGTATATATGTGCATGAT
TTTTTTGGGAAATATCCAACTTGTTTTCGCTAATTACACCAGACATATTCTATATTGTCGCACAGCTAAATTTGTAGCAT
GATTTATCAGGAGGAAAATAGTAATAATAATGATTAAAAAGTTGCAGCATGAACCGGTATATATGTGCATGATTTTTTTG
GGGATTTTCGCAACTTAAAGATCCAACTTTTTTCGCTGAT----------------------------------------
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-----------------------------------TACACCTGATCTATTCTATATTGTCGCACAATATGCATAGAGATG
GATCTATTATCCCGCAAAGAAAAG-AAATCTGTTGGCATATGGGCATGGCCGCTATGACATTTTATATAAAAAGATTCTC
ACATAATATTGGCTGCCCCCTACCAAAATTGCTTCACTT--TGGCCCAAAATGCTGCCTCCCTTTTTTTACTGGTAGAGA
GACAGCCAATATAATAGGCCCCGCCTCAGTCCTTAGGAGGTTGAGCAATGGTACACTTACAAGCAATTTTTTTACAGACT
TAGTCTTACGGAGAGTAATGACATTAACGGATTGGAGGGAATGGGCCCCATACCGGGAATTTGGG-GTGAGATAAATTAG
TTGCTGTCAGCCCTAAATTCTCAAGGTGGCAGCAACTAAG--
>chr7B_49
-------------------------------------------------AAGCATGTCATTTGACTTCTTTAACCGTCAA
TTGATCTTCGACAATTTTTACAATTCATTTTGCCTCCACATGCCTCACCCGTGT--------ACACGTCGCGCTGAGGAA
GCAAAGCAATGGCTTTCCTTGGACGATTGACAAAAACTAACCACGAGCA---------------------GCTAGCATCG
CCTGACTCCCGGTGACTCGCCACTCGCTAGAGCAAATCGCAGACGCTACAGCT-AGCTGCCTTGTGGCAGCAAGCAATGG
ACTTGCGAGCCAAGCAAGCGCGCATGGGGCTGTATGCCATGCACCGC----CGATGAGCATGCAATTGCTTGGCTTGCAA
GAACCGGCCACCCGCCACCACCACCATCGCGTTCGGGCGGAAAACATGGCCGCCACGTGAACCCGCGTTATCCTGTCGCT
G----CCGCCCTGTTAATTCCAGCCATTAGCTAGGGCCCGTCAAGCAAGAAAGCGCCCGAAAATGGTCGATTGATTTGCC
TTTTT-TCATTTCGAGTCGATCTAGGTTAGGGCATCTCCAGCCGTTGGCCCCCCAGGGGGCGTCAAAAAGCGCCGCCTGG
GGGTGAGCCGGCGCAAAAAATGGCCCTGGGGCGAGTCGGCCCCCAGCCGTCGGCCCCAGGGCCGTCCCTAGGCGCGTATT
AAAAAAAAGATGAGACGTTCAACGAAGTTATGATAAAAACTAGTTAAATTTCGGTCAAACATGGTAAATTTCGTCTAAAC
ATGGCAAATTTCGGCGAAATTCGCCATTTTCATGACATTAACCTAATCTAAAAAAGAAAGGCCCTGAAGTCATCGCCGCC
ATCGTCGTCGTCGTCGGCCTTCTCCTCCTTGACGCGGGCGCCCCTGCTGAACCCGGCGTCGCCATGGCGGACTGGCGGCG
GCGCGTCATCGTCGTCGTCGTCGTCGTCGCTGTCGCGTAGGACGACGACCCCGTCTTCATCGCGGTCGCGTCGGCGCTCT
TCGAAGCGGCGCAGGGCGGCACGCTGGCGCTCCTTCACCTTCTCCCGGCGCGCCTTCTCCATCGCAAGGAGTCCTGGCGC
GCCCATTCTAGGGCCGCGTCGTCGTCGTCGAACTCCGCCTTCACCGGCGCAAGCCCCGGCTCCGTCTTCACCGGCGCCAG
CCCCGGCTCCGTCTTTGGCTTGACGAAGCGCGGAGGAGCCGACGAGGACGAGGCGCGCCGGCCGCCCTCGTTGATGACGA
TGCCGGTGCTGCGAGTGCGCCGGCCGAGCGGCGACTCCGCCGGGGGCTCGGCCTTGACGCCGAGCAGGGCCGGAGTGCCG
GAGGAGTGCAACGAGGACCGGGAGGAAGAAGAGGAGGAGGAGGAGCCGAACCTCCTTGGCGCCCATGGCCCGACGCGTCG
GTGCTGCGCCGGGGGGTACGCCAACGGCGGGTCGTTGCCGCCCTCGAGGTACGTGAGCACGCCCTCGAGTGTGTGGCCGG
GGACGCCCCACCAGAGGTGGCGCCCCTCGCTGTTCTGCCGACCGCCGACCACCAGCGCCGTTGGTGGACGCCAATCGCTG
CTGCTGGCGGCGCTCGAAATACGCCGCCCAGGCCGCGTGGTTGTCAGCGGCGTACTGGGGGAGGGAGAGTTGGGCATCGG
TGAGGGACGCGCGCACGATCTCGACCTCCTCGGTGAAGTACTTCAGCTTCGCCACGGCGTCGGGCAACAGGGAATGGGTA
CTCCCCCGGCGCTGAGCCTCCACCCCGATGGCCCGGCGCGCATGTCCGGCGGCGCCGGGATGTTCGCCTGGAACAGGAGC
CAGGACTCCTGTTCGCGGAGCGAACGGCGGCTGAAGCCGTTGGCCGCCGCCTCGTCTCCGGGGAAGCGTTCTGCCATGGC
AACGGCGGGGCGGGGCGGGCTCGGGAGAGGTAGAGGGAGGGGCCGGAGGGCGGCGCTCGGGAGAGGCAGGGAGAGGGAGG
GGTTGGACGGCGGCGAGGTGGGACTGGTCTGGGCACAGGCGAGTGGAGGCCGCTGGCTTTTATAGCCGGGCCGCGCCCGT
GTGTACGCATGCGCGGGAAGGGAGGCGTCGGCGCGCCGAGCCGTGAAGTGCCGCACGTGAGGAATCAATGGCAAGGCTGC
CGGTCAGCCTTGCCATTGATTCCCCGCGGGAAACCGAGGCCGTTGGGGGAACGAGGCGCCGAGTCGCTGACGCGGCTGGC
CCGCGTCTTTTTCGCGCCAAAACAGCTTGCCCCGGCACCCCCCCAGCGCGCCGAGTTCGGGCTGGGTCCGCCGGCGCTGT
TTTCGGCCCAAGCCGACGAAAATCGGGCTCCTGGGGACGCGACTGGGCTGTTTTTTCGGCGCTGGTGTGAAAAAAATGCC
TAGGGAGGCCTTTCTGGGACGCGGCTGGAGATGCCCTTAGCCGCAAGCAAATGGATAGTGCGCCTTCGGAGCCGGTGGCC
CTGCTGCTCATGGGTCATGCGTGCCACCTCA-----------------GAGACGATAGCTTCCAAAAGCGGAGTTCAGA-
-GCGTTCGTCCAGACACAGGTCCATGTGACAGAGACACAGACACAGAGTACACGATGATGAGCGAAGGCAGGGGCAGGCC
ATACGGTTCAGTCGTTCAGTCGTTCAGATGTGGGAAGAAAGCGTGGAGGCTTGCACCACCTCCTTCGCGCGCTTGCGTGC
AAGGCTCACGCCGCCCGAAAAGCAACTTGACGCAAGCCGCATGCCGGCCACCTC----TATATATAAACAACGACCAATC
ACACACAGGACACAGAAGCACACGC---TCTCTTCGACTGTAAGC-----TACACATTTCGATCGCGTCGGATCGTAGTC
TCGTCGACTGTCATCGTCGGCGGCCAGTTGAGCTGGTTTAGTTGTTG--------GGG-AATGGGCAACGTGGTGGAG--
-GCGGCGGCCGCGATCTCGCCGGAGCTCGGGGACGCGCTGGCCAAGGTGGCCGTGTTCGCGCTCGTGCAGGGGCTGGTCT
ACCTCATCCTGCGCAAGTCCTCGGACGTCTTCTCCACGGCCAGCGCGGCGAGGTCGCTCAGCTTCCGGCCGATGCGGAGC
ATGAGCGTCCGCCGCGTGCTGGCGGCATTCTCCGACGTCCCCGTCGGCGTTCCCGACGATGCCGTCTCCTCCGTGGCGCC
GCAGGCCGGTGATGCC------GACCGGCGGGCAGACTAGTTGAAGTGCTTT--GTGTTGAGCTAATGTACGAGTCAATG
GTGCGTGCTTTCTTAGGTTCGTAGTTATCGTTGGTAGTGGTTGTTCTTAAGAAAGGATTGTATGATGAGCATAAAAAAGC
TTGTGTGTGTACAGTAGATTGAAGTGCAATGGATGATTCGATTTTATCTCAAACGAAATCTGCTGCTGTTTCTGGCTGCT
TATCGGGGTGG---ACAGCTGTTGCTTTGTGTTCAGCATGGTTTCAAT--------------------------------
----------------------------------------------------------------------------ATTA
CGTGAATTTTTGTAGAAAGACAATTAGC-TTATGTGAGAATCTTGTCAACAACGACGCTTTGGCCGAGTGGTTAAGGCGT
GTGCCTGCTAAGTACATGGGCTCTGCCCGCGAGAGTTCGAATCTCTCAGGCGTCGATAATTTTTTCTC---CTATTTTGC
TAAATT-----------------------------------------TTAAAAAGTTGCAACATAAACCGGTATATATGT
GCATGT--------------------------------------------------------------------------
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------------------------------------------------------------------------TTTTTTTT
GGCATTTACACAACTTAAAGATACTCCCTCCATTTTTATATACAAGGTCACTATGAAATATACATTTTGCATCTATACAA
GGCCACCAACAATAATCGAGGCAAAATTAATGATATTTTTTTGTAGTAGCAACCTGTTTAATAATTGCATGCATGCATTC
ATAATGACAGTCAGCTACTTCCTCCATTCAGTTTTCTTGCATGCATGTGGGGTATTAATGATCCCAGTAAATAAAAAGAA
AAGCTGACTTGCAAAGCAGTCATTAAATTTTACATTGATATCTGTAATTTGAATTTGTGGCCTTGTTTATAAAAATGAAG
GAAGTACAATTTTTTGCTAATTTTTGGAAAGTGGGTACGCCAGACCTATTCTATATTGCCGCACAATATGCATAGAGATG
GATCTATTATCCGGCAAAGAAAAGAAAATCTGTTGGCATATGGGCATGACCGCTACGACA-TTTATACAAAAAGATTCTC
ACATAATATTGGCTCTCCCTTACCAAAATTGCTTCACTATATGGCCCGAAATGCAGCCTCCCTTTTTTTG--GGCAAAGG
GACAGCCAATATAATGGGGCCCGCCTCAATCCTTAGTAGGCTGAGCAATGCTACACTTACATGCAAC-TTTTTACAGACT
TAGTCTTACGAAGAGTGATGACATTATCAGATGGGA--------------------------------------------
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>SNPs
S-----S----S-------------S---SS-----S--SS-SSSS----------------------------------
-----------S-------S-------------------S--S-SSSS-SSSS---------------------------
-------S-----------S------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSS----------
---------S-------------------------------------------S--------------------------
------------------------------------------------------------------------S-------
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-------------------------------S-----------------------------------------S------
--------------------S-----------------------------------------------------------
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-----------------------------------------------S------------------S------------S
S-------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
---S-----S-------------------------S------------------SSSS----------------------
-------------------S------------------------------------------------------------
------SSS-------------------------------------------------S-------------------SS
S--------------------------------------------------------------S----------------
-------------------------------------------------------S------------------------
-----------S--------------------------------------------------------S-----------
------------------------------S-----------------S---SS----------S---------------
-S--------------------------------------------S---------------S-----S-----S----S
------S----------------------------S----------S---------------------------------
-----S---S---------------S-------------------------S----------------------------
S----------------------------------------S------------------S--S------S---------
--------------S-------S----SS---------------------------------------------------
----------------------------------------------------------S-------S--S-S--------
SS----SS-SSSSSSSSSSS-S----------------------------------------------------------
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--------------------------------------------------------S-------S----------S--S-
--S-SS----S--SS-----------------------------------------------------------------
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--------------S-----S-------S---S-----S----------S------------------------------
------S----------------------S--------------------------------------------------
-------------------S------------------S-------S---------------S--S---SS---------
---S-------------------------------------S-------------S------------------------
--------------------S-----------------------------SS-SS------S---S---S----------
S-----S-------S-----S--SS----S-S--------SS
>forward_210
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------------------------------CACAAACTGACCACCTTGCG------------------------------
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>reverse_4687
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----------------------------------------------TGAAATGCAGCCTCCCCTTC--------------
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