>input_sequence_84698
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--------------------------ATGGCGGCGTCCGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCCCTA
ATGCTGGCGCTGCGCA------CGGCGGATGCGCAGGCGGACGAGGCCCAGAAGCCCAAGTGCGCTCCGGGCGCCGCCAT
GCCGTGCCGTGTGGGCGCGTTGCGCGACCCGGAGAACCAGGAGGAGGAGGGCCTGTTGAACGTGAAGGTGCCGAGCAGCG
CGGCCGACGACGACTACAGCGATCCCGACCAGCCCAAGGACCCCGACGAGTCCGAGGGCGATGACCTCGTCGTCCTCGGC
CACTGA--------------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G374300
TAAGCATGCATGTGCCTCGGTCAGTTCTGTCCTCCGTATTGAAATGGTGTGTGTCTCTCTCTTTCTTTACTTCAGGTTGA
TACTGTATATCAGTTCCTTTGTTTATCATTGAATTGTGTAGTAACTTTGACAGTCTCCGTCATGTAATGACTCACATGTC
AACCTGTCTTATGTTGCCACAACCACATGATTACGTGATTGAAATTCGAAGTATGAGTGAAAGGGTGAAGGGGTCGTGAG
TTGGATGTGTCATTGGCCACAATGTCCGGCTTGGATTGGAGAGGCAACGATAACGAGGTGGAAGAAGAGGAGTGGTTGAA
CGGTAAAAATGTCAATAATGTTGTTTGGTGTACATGAGGATCACAAAGATACAGAAATGCTAAAAATCTAACGTCAGATT
TTTAAGTATGGCAAATCAAACTT-TTTTGATGGCAAATTACGTGTCGCGAGCATGGCAGTTTCCTTCAGCAAGCATGGCA
AATTCTGGCAAAAAAAAAACTTAACTTGTGAAGATGCTG---------------------------------------AA
ACATTTAATTAGCCATGTGTTAAAAATCGGACATCAGATTTGTAGCGCGGTCCTAATGATATATGTTTGACATGATTGTT
GTTGCACTAATTGAATAACTATACCCCATTACAACGCACGCGCAATTA-C------TGAGACAAAAATAGATGCTGGATT
GCAGCGG----TTAGAAACTTGGAAGCTAATTACTA--------------------------------------------
------------------------------TGGA-GGGGAGGCCATGATCCCAGGACCGCTCGTTCATTCTTCCTTGAGA
AAAACATGCGTGACCACCAGAAGAAATGGAAAGAAAGGGACTCGTGATTTGCGGACTACCGGTGTCTCCTCAAGACTAGG
CCCCGGCTAGCTGAAGCTCCACCATGCAATCCGCAGAACGCGCAGAGCTGCAAGCAAATCCACACCGATTTAACCTTCCT
CTTGATCGATCGCACGCACGGCTACAGTTCTCGCGTCT-CCCCTAAAAGAAGTGCAATA---------------------
---------------------------------------------------------------------------TAATT
CTCATCGTCGTCG---AAGCTCACCCATGGCGGCGTCCGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCCCTA
ATGCTGGCGCTGCGCA------CGGCGGATGCGCAGGCGGACGAGGCCCAGAAGCCCAAGTGCGCTCCGGGCGCCGCCAT
GCCGTGCCGTGTGGGCGCGTTGCGCGACCCGGAGAACCAGGAGGAGGAGGGCCTGTTGAACGTGAAGGTGCCGAGCAGCG
CGGCCGACGACGACTACAGCGATCCCGACCAGCCCAAGGACCCCGACGAGTCCGAGGGCGATGACCTCGTCGTCCTCGGC
CACTGATACGATCGACCGTCCGGCCCGACACGATCGATCATGTGCGCGTGGCGCTTAGCATTACATTT-TTTATTTTTTT
GAACACCGCTTAGCATTACATTTGTTATTTATTTTTTAGCCATCTTTTGGTGCGTC-AAGTAGATAGCGTGCGTCGACCG
CGAATGTGTGTTTTCTAATAAGGTTTA-----------------------------------------------------
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------------------------------------------------TTAAGGGATTTGAACATTTGGTATGTGTGATC
TTACACGATTGATGACCTGGATTAATCTGCGGTACACCGTT--------------TTTGATTCA--ATATGCTAATAGGA
TCAATGATTAGGACTTAGATGTGCAATACTTATGGCACATCTAGATGTGCTTTAGCAATTGTTTAGGACACATCTAGATG
TGCTTTAGCAATTGTCTAGGACACATCTAGATGTGCCTTAGTTATTGCACATCTAAGTGACACAAGCAAGCATAGAAAGG
AAAAGGAAAAAAAAATTCACACGAATTTTCACATAAGATTAATGATATAGGACTTAGATGTGCAATACTTATGCCACATC
TAGCTGTGCTTTAGCAAAACTGAT------------CAAAGATACATAAATAGTCTCAAC--------------------
----------------------AAAGTAGGATGCAGCGCCAGC------ATTAGCGCACACTGATATAAGTAAATGTATA
TTTCATAGTGACCGACCTTGTATAAGTAAATGGAGTGTTTCTGGCCAGTTTGGATTAATTAGATTATGATTTGTATCACT
TCAGTAAAATACTTCGTGTGGCTGAATGGTCGTCTTTTGCAGACTTT-ACTCCTCCCG-TGGTCTCACACAAGGCCAACT
TTTGTCTCCGTGTTTATTTCCTTTAGTGGCTGATGCACTTTTGTTGTTGTTAAATGCTGTCTCTAGTGGAGGTGGCATCC
AAGATTTTCGTTTGTGCACACGGGCACCTAATAGCTCAGATTTGCTATTTGCAAATGAAAGTGTGTTGTTCTCTAAGGAA
AATTGTGTGCAATTTTTGTTTATTCAAATGATTTTGGACCTCTATGAAGAGTCCATCTAAGTGTCGA
>chr6A_8
-------GCATGTGCCTCGGTCTGTTCTGTCCTCCGTGTTGAACTGGTGTGTGTCTCTATCTTTCTTTACTTCAGGTTGA
TACTATACATCA--TCCTTTGTTTATCATTGAACTGTGTAGTAACTTTGACACTCTCCGTCATGTAATGACTCATATGAG
AATCTGTCTTATGTTACCACAACCGCATGATTACGTGATTGAAATTCGAAGTATGAGTGAAAGGGTGAAGGGGTCATGAG
TTGGA-GTGCCATTGGCGACAATGTCCGGCTTGGATTGAAGAGGCAACGATAACGAGGTGGAACAAGAGGAGTGGTTGAA
CGGTAAAAATGTCAGTAATGTTGTTTGGTGTATATGAGGATCACAAAGATATAGAAATGCTAAAAATCTAACGTCGGATT
TTTAAGTATGGCAAATCAAACTT-TTTTTATGGC--ATTACATGTCGCGAGCAA-----TTTCCTTCAGCAAGCATGGCA
AATTCTGGCAAAAAAA---CTTAACTTGTGAAGATGCTAAAGGGAATATTGTC---------------------ATAAAA
ACATTTGATTAGCCATGTGTTAAAAATCTGACATCAAATTTGTAACGCGGTTCTAAAGATATATGCTTGACATGATTGTT
GTTACACCAATTGAATAACCATA-CCCATTGCAACGCACGCGCAATTACC------TGAGACAAAAATAGATGCTGGATT
GTAGCGG----TTAGAAACTTGGAAGCTAATTACTAAGGAGATTCAAAGCTTGCATTTGAGAGTAGGGAGGTGGGGTGGG
GGAGCCATGATTGGATATCAATGCATGCAATGGA-GGGGAGGCCATGATCCGAGGAC---TCGTTTATTTTTCCTTGAGA
AGAACATGGGTGACCACCAGAAGAAATGGAAAGGAAGGGACTCGTGTTTTGCGGACCAGCGGTGTCTGCTCAAAACTAGG
CCCCGGCTACCTCGAGCTCCACCACGCAATCCGCAAAACACGCTGAGCTGCAAGCAAATCCACATCGATTTAAGCTTCCT
CTTAATCGATCGCACGCATGGCTACAGTTCTCGCGTCT-CCTTAAAAAATAGTACAATATACTTTCTCCGTTTCAAAATA
GATGACTCAACTTTATACTAACTATATACTAAAGCTAGTATAAAGTTGAGTCATGTTTTTTTAGAACGGAGTGAGTAATT
CTCATCGTCGTCT---AGGCGTACCCATGGCGGCGTCCGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCGCTA
ACACTGGCGCTGCGCTCGGCGTCGGCGGACGCGCAGGCGGACGAGGCCCAGAAGCCCAAGTGCGCTCCGGGCGCCGCCAC
GCCGTGCCGCGTGGGTGCGTTGCGTGATCCGGAGAACCAGGAGGAGGAGGGCCTGCTCAACGTGAAGGTGCCGAGCAGCG
CGGCCGACGATGACTACAGCGATCCCGACCAGCCCAAGGACCCCGACCAGTCCGACGGAGATGACCTCGTTATCCTCGGC
CACTGATACGATCGATCGATTG---CGACACGATCGATCACGTGCGCCTGACGCGTAGCGTTACATTTCTTG--------
----------------------------TTTATTTGTAGCTCATTTTTTGGTGTGTTAAGTAGATAGTGTGCTTGGACCG
CGAACGTGTGTTTC----TAAAGATTA-----------------------------------------------------
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------------------------------------------------TAAAAGGATTTGGGCATTTGGTAAAGTCTGAT
CCTTATA---------CTCGATTAATCTGCGGTACGCCATTCCTAGTCTCAAGTTTTTGGTTTGATATATGGCAATAAGA
T-------------------------------------------------------------------------------
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--------------------TGGTTGAATGAGAAGTCAAAGATACAAAACTTGTCTCAACAAAGTAAATTATGCAACGCA
TATGTTTTCTCTCTAAAACTCTAAAGTATGATGCAGCGCCAGT------GTTAGTGCGCAC-GATATAAGTAAATGTATA
TTTCATAGTGACC----TTGTATAAGTAAATGGAGGGTTTCTCGCCAGTTTGGATTAAGTAGATTATGATTTGTGTTACT
TCTGTAAAACACTTGGTGTGGCTGAATGGTCATCTTTTGCTGACTTTTACTCCTTCCG-CGGTCTCACACAAGGCTATCT
TTTGTCTCCGTGTTTATTTCCTTTAGTGGCTGATGTGCTTTTGCTGTTGTTAAATGATGTCTCTAGTAGAGGTGGCACCC
AAGATTTTTGTTTGTGCACACGGGCAGCTAATAGCTCGGATTTGCTATTTGCAAATGATAGTGTGTTGTTCTTTAAGGAA
AAATTTGAGCAAATTTTGACCATTCAAATGATTTTGGCCCTCTATGAAGA-----------------
>chr6D_165
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----TGTCTTATATTACCACAACCGCATGATTAAGTTTTTGAAATTCGAAGTATGAGTGAAATGGTGAAGGGACTGTGAG
CCGGATGTGCCATTGGCGACAATGTCAGCCTAGGATTGAGGAGGCAA-GATAACGAGGTGGAAGAAGAGGAGTGGTTGAA
CGTAAAAAAGTCAATATTGCT-----------------GATCATAAAGATACGTAAATGCTAAAAATCTGACGTCAGATT
TTAAGCATAGCAATTTGAATGTTGTTTTCATCGCAAATTACGTGTCACGGGCATAGTCAGAATTTGTTATGCT-------
----------------------------------TGCTGAAGGAAATTGCTAGGCTCGCGGCATGTAATTTGCAATAAAA
ACATTTGATTAGCCATGT-TTAAAAATCTGACATCAGATTTCTAGTGCGGTCCTGAAGATATATGTTTGACATGATCGTT
GTTACACTAATTGGATAACTATATCCCGTTGCAACGCACGGGTAATTA-CCTAGCATGAGACAAAAATAGATGCTGGATT
GCAGCGTGTGCTTAGAAACTA-GAAGCTAATTGCTAAGGAGATTCAAAGGTTGGAGACTAGGAGGAGCC---------GG
CGAGCCATGACTGAATATCAATGCATGCAATGGAGGGGGAGGCCATGATCCGAGGACCGCTCGTTTATTTTTCCTTGAGA
AGAACATGGGTGACCACCAGAAGAAATGGAAAGGAAGGGACTCGTGTTTTGCGGACCAGCGGTGTCTGCTCAAAACTAGG
CCCCGGCTACCTCGAGCTCCACCACGCAATCCGCAGAACACGCAGAGCTGCAAGCAAATCCACATCGATTTAACCTTCCT
CTTGATCGATCGCACGCACGGCTACAATTCTCGCGTCTTCCTCTAAAAGAAGCGCAATA---------------------
---------------------------------------------------------------------------TAATT
CTCATCATCGTCGTCGAGGCGCACCCATGGCGGCGTCCGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCGCTA
ACACTGGCGCTGCGCT------CGGCGGACGCACAGGCGGACGAGTCCCAGAAGCCCAAGTGCGCTCCGGGCGCCGCCAC
GACGTGCCGCGTGGGCGCGTTGCGCGACCCGGAGAACCAGGAGGAGGAGGGCCTGCTCAACGTGAAGGTGCCGAGCAGCG
CGGCCGACGACGACTACAGCGATCCCGACCAGCCCAAGGACCCCGACCAGTCCGACGGCGATGACCTCGTCGTCCTCGGC
CACTGATACGATCAATCGATTG---CGACACGATCGATCACGTGCGCCTGGCGCGTAGCATTACATTTCTTG--------
----------------------------TTTATTTGTAGCTCGTTTTTTGGTGCGTTAAGTAGATAGTGTGCTTGGACCG
CGAACGTGTGTTTTCC---AAAGATTG-----------------------------------------------------
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------------------------------------------------TAAAAGGATTTGGGCATTTGGTAAAGTCTGAT
CCT--TA---------CTCGATTAATCTGCGGTACGCCATTCCTAGTCTCAAGTTTTTGGTTTG--ATTTGGCAATATGA
T-------------------------------------------------------------------------------
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--------------------TGGT------------CAAAGATACATGAATAGTCTCAACAAAGTAAATTATGCAATGTA
TATGTTTTCTCTCTCAAACTCTAAAGTAGGATGCAGCGTCAGC------ATTAGCGCACACTGATTTAAGTAAATGTATA
TTCCATAGTGACC----TTGTATAAGTAAATGGAGGGTTTCTGGCCAGTTTGGATTAATTAGATTATGATTTGCATCACT
TTCGTAAAATACTTTGTGTGGTTGAATGGTCGTCTTTTGCAGACTTTTGCTCCT-CCG-TGGTCTCACACAAGGCTATCT
TTTGTCTCCGTGTTTATTTCCTTTAGTGGCTGATGTGCTTTTGCTGTTGTTAAATGATGTCTCTAGTAGAGGTGGCATCC
AAGATTTTCGTTTGTGCACAC-----------AGGTCGGATTTGCTGTTTGCAAATGATAGTGTGTTGTTCTTTAAGGAA
AAATTTGAACAAATTTTGATTATTCAAATGATTTTGGCCCTCTATGAAGA-----------------
>chr6B_782
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---------------------------GGAAAGAAATTGACTCGTGTTTTGCGGACTAGCGGTGTCACCTCAAGACTAGG
CCCCGGCTACCTCAAGCTCGGCCACGCAATCCGCGGAACACGCAAATCTGCAAGCAAATCCACATCGATTTAACCTTCCT
CTTGATCGATCGCACACACGACTACAGTTCTCAAG----CCTCTAAAAAAAGTGCAATA---------------------
---------------------------------------------------------------------------CAATT
TTCATCGTCGTCG---AGGCGCACCCATGGCAGCGTCTGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCGCTA
ACGCTCGCGCTGCGCT------CGA-GGACGCGCAGGCAGACGAGGCCGAGAAGCCCAAGTGCGCTCCGGGCGCCGCCAC
GCCATGCCGCGTGGGCGCGTTGCGCGACCCGGAGAACCAGGAGG---AGGGCCTGTTGAACTTGAAGGTGCCGATCAGCG
CGGCCGACGACGACTACAGCGATCCCGACCAGCCCAAGGACCCCGACGAGTCCGACGGCGATGACCTCGTCGTCCTCGGC
CACTGATACGGTCGACCGGCCGCTCCGGCATGATCGATCATGTGCGCGTGGCGCTTAGCATTCCATTT-TTT--------
----------------------------TTATTCTTTAGCTATTTTTTCGATGCGTTAAGTAGATAATATGCGTGGACCG
CGAACCTGTGTTTTCC---GAAGACTATAATGTACAATGATTAGTCTTATCTTAAGTTTTTCATGTAACTGAGAGATGAC
AAAAAAAATGTTTACAATGGGTCATCTCCTAGCCTTATCTTCAATAACTAGCTATTCCTAAAAATATGATGAGACATATT
GTGCTAAGAGATCATCTCTTGTCTTGTCTTAAATAAGAGAAGACAAACCTTTACTTATGAGTTCTTTCTCCTTCACCTCA
TCATTTATTCTACATGGCACTCCTAAGATAGCATCATTGTACATGCCCTAAAGGGATTTGGACATTTGGTAATGTCTGAT
CCT--TA---------CTCGATTAATCTGCAGTACGCCATTCCTAGTCTCAAGTTTTTGGTTTG--ATATGGCAATAAGA
T-------------------------------------------------------------------------------
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--------------------TGGTTGAATGAGAAGTCAAA----------------------AGTAAATTATGCAACACA
TATTG-TTTTCTCCAAAACTCTAAAGTAGGATGAAGCGCCAGCGCCAGCGTTAGCGCGCACTGATATAAGTAAATGTATA
TTTCATATTGGA----CTTTAATAAGTAAATGGAGGGTTTCTCGCCGGCTTGGATTAATTAGATTATGATTTGTGTCACT
TTGGTAAAGTACTTAGTGTGGCTGAATGGTCGTCTTTTGCAGACTTTTACTCCT-CCGGTGGTCTCACACAAGGCTATCT
TTTGTCTCCGTGTTTATTTCCTTTAGTGGCTGATGCGCTTTTGTTGTTGTTAAATGATGTCTCTAGTAGAGGTGGAGCCC
AAGATTTTCGTTTGTGCACACGGGCACCTAATAGCTCGGATTTGCTATTTGCAAATGAAAGTGTGTTGTTCTTTAAGGAA
AATTTGGAGCAA------ATTATTCAAATGATTTTGGCCCTCTA-----------------------
>SNPs
SSSSSSS---------------S--------------S-----S--------------S---------------------
----S--S----SS-------------------S------------------S---------------------S---SS
--S------------S--------S-------------------------------------------------------
---------S-------S--------------------S-----------------------------------------
--------------S-----------------S-----------------------------------------------
----------------------------S-------------------------S-SSS---------------------
----------------SSS-------------------------------------------------------------
------S---------------------S---------------------------S-----------------------
---S-------------------S------S-------------------------------------------------
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---------------------------------------------------S-------------S---S----------
-S------S-------------------------------------S-----------S---------------------
---------S--S-----------S--------------S------------------------S---------------
-----------------------------------------S--------------------------------------
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-----------------S--S-------------------------------------------------------S---
-S-------------S-------------S-------------------------------------------------S
---------S----------------------------------------------------------------------
-------------------------------------------------------S------------------------
------------------S---SS------------------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S--S----S-SSSSSS-----------S------S-----
----S----------SSS---S-S--------------------------------------------------------
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-------------------------------------------------S----------S----------SSSSSSSSS
SSSS-SSSSSSSSSSS--S----------------S--S--------------------S--SS-------SS----S--
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--S---------------------------------------------------------
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-------------SSS-------------------S--------------------------------------------
--S-----------S---------------------------------------S--------------------S-S--
------------------------------------S-------------------S----------S------------
-------------------------------------S----------------------------------S-------
----S--S----S-----S------------------S------------SSSSSSSSSSSSSSSSS
>forward_250
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----------------------------------------------------------------------GGGTCGTGAG
TTGGATGTGT----------------------------------------------------------------------
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>reverse_1675
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--------------------------------------------------------------------------CGACCG
CGAATGTGTGTTTT------------------------------------------------------------------
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