>input_sequence_84697
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-----------------------------------------ATGGAGGAGGCGCTCATCTCGCCGGAGCTGCGCGACGTG
CTGGCCAAGGTGGCCGTGTTCCTGCTCGTGCAGGGGCTGGTGTACCTCATCCTCACCAACTCCTCCGACGTCTTCTCCAA
GAGCAAGAGGCTCCGGTCCCTCAGCTTCCGGCCCATGCGGTCCATGAGCGTGCGCCGCGTGCTGGCGCCGCTCTCCGACA
TCCCCGTCGGCACCGACGAGAACTCGCCCTCCCC------TTTGCTGTCTTCATCTTCGTCGTGGTCGTCGCGCCGCT-G
GGGTAGCCGCAAAGAGGATTGA----------------------------------------------------------
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>chr6B_1_TraesCS6B01G353500
AGCTTGTTAATTAACCCTGGACTCGTGGGGACGCATCGACCAATGGTCAAAATATTCCAGAACGAGATG---ACAACTTG
CACGATTGTGATCCAAAATGTAT-TTTGTTCCACAAGCGCGTACAGTACAGAGAAGATTAACAAACTAGCCACATGTCGT
CGGTCAAACCGATGCTCCGCGCACATCGTCGGCGTCGGGTCTCCGATCTGC---TTGCCAAGG-TTTTGGGGCGCCGCGG
CGACGTGGTCATTCCAAGGTTAACCAACCGCGCCTGTCCCCGTGGGTTAATCAATCAACAAACGTGTTCAACGGATTAAA
TTGGTGGCAGAGTACTGCTTAATTACGTCCGTGGGTGTTGGAACTGG-AAAGCACTGCTTCCAGAATCGATGGTGACGAT
TATTGCTTGGACAAGTGTAGATCGATG---------AGATAAGTCGTTATCTATCTCGGCTGCCTGAGAATCAGAATACT
ACGTCACCCTCTCCTCTCACGCATCGCTTTCTC-AAATGGCACACTGCTGACTT-----AACCAAGACGTCCAAACACCC
TTAGCAGCCACCTCCAACA-AAAAAGGTGCGCTTAGCAGCCTTGGCACACGACACATCACACATGTCTCCAAAGTCAAGC
CGGTCCTACGACACAAAGATGTTGACACGACGAGGCCACATCAAGATCAAGATCCCGACCCAAAAATGGCCGAGAGTGAA
AACGTGAAGCTGAAGACTCGTTCCACGGCAGCTGC---------TCCTTCCGGGCAAAGCAACACGA--AACCCACAACA
CTTCACCGCTTGCGTTTGCGTACACGACCAAGGG-AAAAATAATCACACCTCGCCGTCGCACATGCCACA----------
-------------CGCA--AGGCTCTATATAAGGAGCAGCGGAGCAGGCAGAGGCCACCATCGAGATCGAAT----CATC
GATACACAATCGCAGTCGCAGCCTCATCATCTGCCACAAGTGACCCACACGCATCTCGTTTGCCAGCCTCT----TTGA-
-------TTGATCCACCGATCCCTCGCCGCCGATGACC---ATGGAGGAGGCGCTCATCTCGCCGGAGCTGCGCGACGTG
CTGGCCAAGGTGGCCGTGTTCCTGCTCGTGCAGGGGCTGGTGTACCTCATCCTCACCAACTCCTCCGACGTCTTCTCCAA
GAGCAAGAGGCTCCGGTCCCTCAGCTTCCGGCCCATGCGGTCCATGAGCGTGCGCCGCGTGCTGGCGCCGCTCTCCGACA
TCCCCGTCGGCACCGACGAGAACTCGCCCTCCCC------TTTGCTGTCTTCATCTTCGTCGTGGTCGTCGCGCCGCT-G
GGGTAGCCGCAAAGAGGATTGAGCAGCTTGGAGGTTGGAG--CGGTTAC----TGAGTTCTGACGCCAGATGGGCAGCTA
TAGCTTGGTGATTCTGAACTGCCGTGGGTTTGAGATTTGAGAATGGTAGTATTTGTTAAACTTTCATGTGAGCTAGATTT
AGATGGGGTCTTGTACATATGTTCATTAATTTGAATTGGGAGGATGAACAAGTATTTGAAAAATGTTGAAGAAGCATTTT
GAAAAATGTTGAACA-----------------------TGTATATAAAAATGTTGAACAACTATTTGAAAAGTATTGAAG
AAGTATTTCAAAAAAGGTTTATCATGTATATAAAAATATTGAACAAGTATATGAAACAAAGTAGAATAAATATTTAAAAA
AAATATTGATCATCTATATAAGAATGTAGAATGAGAAAGAAACAATGA-------------------AAAACCAAAAAAG
AAACAAAATAGACTAAAGGAAAAGGAAAATGAAAAAAAAAAACTAAAGACACAAATAAAAAAACTAGGAGAAAAAAAACT
CATCTCTTTTCCTTCTAGTAAGTCACACCCTACCTATTGTACACATGTTGATGGCGGCGCATCAATGAAATAGGAAGGAT
CGAGCCCTCGCGGGTGTAACGCCCACGATGCGGCTATATCTCTCACGTGTCGAGGCATGACTTAGAGGCATAACCGCATT
GTGGTTTTGTCGCAAGAAGGATCATCTTCACACAATCCCATGTAATGAACAAGAAAGAGATAAAGAGAGTTGGCTTACAA
TCGCCACTTCACACAAAGATCATATAATTCATACATCATTCAGAGTACACAAATAGTCCGACTACGGACAAATCCAAATG
AAAAGAAGATAACCCCAAAAGCTAGATCCCCGATCGTCCCAACTGGGCTCCACTACTGATCATTAGGAAAAGACACGAAG
TAACGGCCAAGGACCTCGTCGAACTCCCACTGGAGTTCGGTAGCATCACCTGCACTGGTATCATTGGGACCTGCAACTGT
TTTGGTAGTATCTGGTGAGTCACGAGGACT
>chr6D_1
AGCTTGTTAATTAACCCTGGACTCGTGGGGACGCATCGACCAA-------------------------------------
--------TGGTTAAAAATGTATATTTTGTTT-CAAGCACGTACAGTACAGGGAAGATTAACTGGCTAGCCACAT---GT
CGGTCAAACCGATGCTCTGCGCGCAC------CGTCGGGTCTCCGATCTGCCGCTTGCCAAGGTTTTTGGGGCGGCGCGG
CGACGTGGTCATTCGAAGGTTAACCAACCGCGCCCTGTCGCCGCGGTTAATCAATCAACAAACGTGTTCAACGGATCAAA
TTGGTGGCAGAGTACTGCTTAATCACGTCCGTGTGT--TGGAATAGG-AAACCACTGCTTCCAGAATCAATGGTGACGA-
CATTGCTTGGACAAGTGTAGATCGATGTGGCTCGCTAGATAAGTCATTATCTATGTG----GCCAGAGAATCACAACACG
ACGTCAC-----CCTCTCACCCATCGCTTTCTCCAAATGGCACACTACACTGTTTAATCAACCAAGCCGTCCAAACACCC
TTAGCAGCCACCTCCAACA-AAAAAGGTACGCTTAGCAGCCCTGGCACACGACACATT-------TCTCCCAAGTCAAGC
CGATCCGACGTCGCAAAGATGTTGACACGACGACGCCACATGAAGATCAAGATCCCGACCCAAAAATGGCCGAGAGTGAA
AACGTGAAGCTAAAGACTCGTTCCACGGCAGCTGC---------GCCTTCCGGGCAAAGCAACACGA--AACCCACAACA
CTTCACCGCTTGCGTTTGCGTACACGACCGAGGGAAAAAATAATCACACCTCGCCGTCGCACATGCAACA----------
-------------CGCA--AAGCTCTATATAAAGGGCCAGCGAGCAGCCAAAGGCCACCACCGC---CGAAT----CATC
CATCGATA--------------------------CACAAGTCATCCGTACGCATCTCGTTTGCCAGTCTTTTCGATTGA-
-------TTGACCGATCCATCTCTCGCCGCCGGTGACCGTGATGGAGGAGGCGCTCATCTCGCCGGAGCTCCGGGACGTG
CTGGCCAAGGTGGCGGTGTTCCTGCTCGTGCAGGGGCTGGTGTACCTCATCCTCACCAACTCCTCCGACGTCTTCTCCAA
GAACAAGAGGCTCCGGTCCCTCAGCTTCCGGCCCATGCGCTCCATGAGCGTGCGCCGCGTCCTGGCGCCGCTCTCCGACG
TCCCCGTCGGCACCGACGACGACTCGCCCTCGCC------TTCGCTGTTTTCGTCTTCTTCGTGGTCGTCGCGCCGCT-G
GGGTAGCCGCAAAGAGGATTGAGCAGCTTGGAGTTTGGAC--CGGTTGCTTAATTAGTTCTGACGCCAGATGGGTAGCTA
TAGCTTGGTGATTCTGAACTGCCGTGGGTTTGAGATTTGAGAATGGTAGTATTTGTTAAACTTTCATGTGAGCTAGATTT
AGATGGAGTCTTGTACATATGTTCATTGATTTGAATTGGGAGGATGAACAAGTATTTGAAAATTGTTGAAGAAGGATTTT
AAAAAATGTTGAACAAATATATGAGAAAATGTTGACCATGTATATAAAAATGTTGAACAAATATTTGAAAAAAATTGAAC
AAGTATTTAAAAAAAAGTTTATCATGTATATAAAAATGTTGAACAGTATTTG-------------------------AAA
AAATGTTGATCATGTATATAAGAATGTAGAATGAAAACAAAAAGAAACAACAAAAAACCAAAAAAAGAAAACCAAAAAAG
AAACAAAATAAACTAAAGGAAAATGAAAAG-------AAAAACTAAAGACACAAATGAAAAAATCCGGAGAAGAAAAAAA
TCA-----------------------------------------------------------------------------
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>chr6A_1
AGCTTGCTAATTAACCCTGCACTCGTGGGGACGCATCGACCGATGGTCAAAATATTCTAGAACGAGATAGCAACAACATG
CACGATTGTGATTCAAAATGTAT-TTTTGTTT-CAAGCGCGTACAGTGCAGGCAAGATTTACTAACTGGCCAAATGTAGT
CGGTCAAACCGACGGTCTGCGCGCAC------CGTCGGGTCTCCGATCTGCCGCTTGCGAAGG-TTTTGGGGCGGCGCGG
CGACGTGGTCATCCGAAGGTTAACCAACCGCGCCCTGCCCCTGTGGTTAATCAATCAACAAACGTGTTCAACGGGTCAAA
TTGGTGGCAGAGTACTGCTTAATTACGTCCGTGCGT--TGGAATTGGAAAACCACTGCTTCCAGAATCGATGGCGACGA-
TATTGCCTGGACAAGTGTAGATCGACGAGGTTG---ATATAAGTCATTATCTATGTG----GCCAGAGAATCACAACACC
AGGTCAC-----CCTATCACCCATCACTTTCTCCAAATGGCACACTGCTTAATT-----AACCAAGCCGTCCAAACACCC
TTAGCAGCCACCTCCAACAAAAAAAGGTACGCTTAGCAGCCTTGGCACACGACACACATCCCA-------CAAGTCAAGC
CGATCCGACGTCGCAAGGATGTTGACACCACGACGCCACATCAAGATCAAGACCCCGACCCAAAAATGGCCGAGAGTGAA
AACGTGAAGCCAAAGACTCGTTCCACGGCAGCTTCGCCTCCCTTGCCTTCCCGGCAAAGCAACACGA--AACCCACAACG
CTTCACCGCTTGCGTTTGCGTACACGACCCAGAG-AAAAATAATCACACCTCGCCGTCGCACATGCCGCA----------
-------------CGCA--AGGCTCTATATAAACAGCAACCCAGCAGCCAAAAGCCACCAC------CGAAT----CATC
GATACACAGGAG------CGACCTCATCATCTGACACA---------CACGCATCTTATTAGCCATCCACTTTGATTGA-
-------CTGATCCACCGATCCCTCGCCGCCGATGACC---ATGGAGGAGGCGCTCATCTCGCCGGAGCTGCGCGACGTG
CTGGCCAAGGTGGCGGTGTTCCTGCTCGTGCAGGGGCTGGTGTACCTCATCCTCACCAACTCCTCCGACGTCTTCTCCAA
GAACAAGAGGCTCCGGTCCCTCAGCTTCCGGCCCATGCGGTCCATGAGCGTGCGCCGCGTCCTGGCGCCGCTCTCCGACG
TCCCCGTCGGCACCGACGACGACTCGCCCTCGCC------GTCGCTGTCTTCGTCTTCGTCGTGGTCGTCGCGCCGCT-G
GGGTAAGCGCCACGAGGATTGAGCAGCTTGGAGGTTGGAG--CGGTT------------CTGACGCCA-----------A
TAGCCTGGTGA---TGAACTGCCGTGGGTTTGAGATTTCAGAATGGTA---TTTGTTGAAGTCTCATGTGAGCTAGATTT
AGATGGGGTCTTGTACATATGTTCATTGATTTGAATTGGGAGGATGAACAAGTATTTGAAAAATGTTGAAGAAGGGTTTT
GAAAAATGTTGAACAAGTATATGAGAAAATGTTGA---------------------------------------------
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>chr6A_730
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----------------------------------C---------TCCTTCCCGGCAAAGCAACGCGGCCAACCCATAACA
CTTCACCGCTTGCGTTTGCGTACACGACCGAGAG-AAAAATAATCACACCTCGCCATCGCACATGCCACGGCAATCCACA
AGCACAAGCCAAGCGCC-GGAGCTCTATATAAGGAGCCGGCGAGCAGGCGAAGGCCACCATCCAGATCGAAT----CATC
GATACACAATCA------CAGCCTCATCATCAGCCACAAGGGA----------TCTCGTTTGG--------TTGAGTGA-
-------TTGATCGATCGACCCCTCGCCGCCGGTGACCATGATGGGGGAGGCGCTCATCTCGCCGGAGCTGCGCGACGTG
TTGGCCAAGGTGGCGGTGTTCCTGCTCGTGCAGGGGCTGGTGTACCTCATCCTCACCAACTCCTCCGACGTCTTCTCCAA
GAGCAAGAGGCTCCGGTCCCTCAGCTTCCGGCCCATGCGGTCCATGAGCGTGCGCCGCGTCCTGGCGCCGCTCTCCGACG
TCCCCGTCGGCACCGACGACGACTCGCCCTCGCCCTCGCCTTCGCTGTTTTCGTCTTCTTCGTGGTCGTCGCGCCGCT-G
GG-TAGCCGCAAAGAGGATTGAGCAGCTTGGAGTC---AGAGCGGTTGC----TTAGTTCTGACGCCAGATGGGTAGCTA
CTAG----------------------------------------------------------------------------
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>chr6D_749
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--------------------------------------------------------------CACGA--AACCCACAACG
TTTCACCGCTTGCGTTTGCGTACACGACCGAGAG-AAAAATAATCACGCCTCGCCGTCGCACATGCCACGGCAATCCACA
AGCACAAGCCAAGCGCA--GAGCTCTATATAAAGAGCCGGCGAGCAGGCAGAGGCCACCACCGC---CGAAGCATCCACC
GATACACAAGAG------CGACCTCATCATCTGCCACAAGTGA----------TTC-----GCCATCCCCTTTGATTGA-
-------CTGATCCACCGATCCCTCGCCGCCGATGACC---ATGGAGGAGGCGCTCATCTCGCCGGAGCTCCGCGACGTG
CTGGCCAAGGTGGCCGTGTTCCTGCTCGTGCAGGGGCTGGTGTACCTCATCCTCACCAACTCCTCCGACGTCTTCTCCAA
GAGCAAGAGGCTCCGGTCCCTCAGCTTCCGGCCCATGCGGTCCATGAGCGTGCGCCGCGTCCTGGCGCCGCTCTCCGACG
TCCCCGTCGGCACCGACGACGACTCTCCTTTGCCTTCG------------TCGGCTTCTTCGTGGTCGTCGCGCCGCTGG
GG-TAGCCGCAAAGAGGATTGAGCAGCTTGGAGTC---AG--CGGCTGG----TTAGTTCTGACACCAAATGGGTAGATA
CTAGC---------------------------------------------------------------------------
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>chr6B_756
CCCACGAAAC----------------------------------------------------------------------
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CTTCACCGCTTGCGTTTGCGTACACGACCGAGAG-TAAAATAACCACACATCGCCATCGCACATGCCACAGCAATCCACA
AGCACAAGCCAAGCGCGAGGGGCTCTATATAAGGAGCAGCCGAGCAGGCAAAGGCCACCATCCAGATCGAAT----CATC
GATACACAATCA------CAGCCTCATCATCAGCCACAAGGGACCCGTACGCATCTCGTTTGCCAGCCTCT----TTGGT
TGACTGGTTGATCGATCGACCCCTCGCCGCCGGTGACCATGATGGAGGTGGCCCTCATCTCGCCGGAGCTCCGCGACGTG
CTGATCAAGGTGGCCGTGTTCCTGCTCGTGCAGGGGCTGGTGTACCTCATCCTCACCAACTCCTCCGACGTCTTCTCCAA
GAACAAGAGGCTCAGGTCCCTCAGCTTCCGGCCCATGCGGTCCATGAGCGTGCGGCGTGTCCTGGCGCCGCTCTCCGACG
TCCCCGTCGGCACCGACGACGACTCGCCCTCGCCTTCG------CTGTCTTCGTATTCTTCGTGGTCGTGGCGCCGGTGG
GG-TAGCCGCAAAGAGGATTGAGCAGCTTGGAGGCTGGAG--CGGTTGC----TTAGTTCTGACGCCAGATGGGTAGCTA
TAG-----------------------------------------------------------------------------
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>chr6B_1765
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------------------------------------------------------------AAATAGGGAGGAAAAAAACT
CAGCTCTTTTCCTTCTAGTAAGTCACACCCTACCTATTGTACACATGTTGATGGTGGCGCATCAATGAAATAGGGAGGAT
CGAGCCCTCGCGGGTGTAACGCCCATGATGCGGCTATATCTCTCACGTGTCGTGGCATGACTTAGAGGCATAACCGCATT
GTGGTTTTGTCGCAAGAAGGGTCATCTTCACACAATCCCATGTAATGAACAAGAAAGGGATAAAGAGAGTTGGCTTACAA
TCGCCACTTCACACAAAGATCATATAATTCATACATCATTCAGAGTACACAAATAGTCCGACTACAGACAAATCCAAATG
AAAAGAAGATAACCCCAAAAGCTAGATCCCCGATCGTCCCAACTGGGCTCCACTACTGATCATTAGGAAAAGACACGAAG
TAACGGCCAAGGACCTTGTCGAACTCCCACTGGAGTTCGGTAGCATCACCTGCACTGGTATCATTGGGACCTGCAACTGT
TTTGGTAGTATCTGGTGAGTCACGAGGACT
>SNPs
---------------------------------------------------------S----------S--------S--
------------S--------------SS-SSS------------------S----------S--------------S--
-----------------S----S--SSSSSSS------------------------------------------S-----
--------------S-------------------SSS----SSS--------------------------------S---
---------------------------------S--SS-----S-------S---------------------------S
---------------------------------------------S--------S-SSSSS---S--------S--S--S
-------SSSSS--------S----------------------------S-S--------------S-------------
----------------------------S----------------------------SS-S--SS-----S---------
--S---S---S-S--------------------S----------------------------------------------
-----------S--------------------------------------------------------------------
-----------------------------S--------------------------------------------------
----------------------------------------S---------------------------------------
------------SSSSSS----------------------------S---------------------------------
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------------------------------------------------------------S------------------S
-------------------SS----------S----------S---------S---------------------------
-----------------------------------------------S------S-------------------S-----
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---------------------------S----------------------------------------------S-----
------------------------------------------------------------S----------SS------S
--------S------S---------------------S-------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSS---
----S--------S--------------------S--SS---SS-SSS--------------------------------
----------S------------S-----SSSSSSSS-------------------S------SSS--------------
--S---------------------------------------------------S-------------------S-----
-------------------------S--------------------------S---------------------------
--------------------S------------------------------------S----------------------
-----------------------------------------------------------------S--------------
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----------------S---------------------------------------------------------------
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>forward_643
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---------------------------------------------------------------TGTCTCCAAAGTCAAGC
CGG-----------------------------------------------------------------------------
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>reverse_1975
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------------------------------------------------------CGGCGCATCAATGAAATAGGA-----
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