>input_sequence_84671
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGGCGAGGTTCCGGTTGCACTGGCTGGAGGCCATGCTGCCGCTGGGCA
TCATCGGCGGCTTCCTCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAGGGTAACGCCGCTC
CCTTTCCCCATTTCC--CTCTCCCCCGAATCCCGATCCGAATCTCTCTC-------GTGCTGAGGCGGGCGTGTGGTTTG
TTGGATGCAGCCGAAGCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAGCTCGTCGACAAGC
CCGCCGCCAACTAG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1D_1_TraesCS1D01G302300
GTGCGTTTGCTGTCTGCCTTGACCCAAACCGAGCGCATGTTTGCGTTCAAAATGGATCAGGCCAAACACAAAACGAACAA
GATGGGTTCAGGCCGTCGCGCGGTTGGCCGTGGGGTCTGTTCATTTTGCCCAAACAGACGAGACCGGACGGGATGGAGTC
GCGCGTGAATGGAGGGTCAGCCTCGTACTACTACGATGGGAAAATAAAATGAGGAGAAA---AAACTACTACTACAGGAT
CCCGCGATGGCATACCGAAGATAC----GCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGAAAAGGGCTCCCGG
CCCGAGACAAAGGCGCCATCTCCATCCATCTCGCACGTCCCCGCCCGGTCTAGCTTTCCATGCTCGCTCTTGCTTCGTGC
AAAGTAGCAATATTTTGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCTCCCCTCCTCCTTTTCCC
ATGATCCTGTTTAGTGTAAA--AGAACACTGGAGTAGTGGAGTAGTTCCAAGTTCCAACTTGTAGCCCTTCCGGGATTCC
ATGAGCTGATGAGCACGACCATCGCA-CTGCCCAACTCCAGTTGACATTCTTGGGAGTGGGCGTCAACATTACATACAAA
TTGTA--------------------------------------CTTGTAGGATTATCTTCATAACTTTTAGTGTGAAATT
ATGAAAACACTTAAGATTTTTTAGCCGAAAACATATTCAGATTTTTTTGAGGAGTATTCAGATTTTCTTCTGTGACG---
--------------------------------------CCATTTTCAATTGGAGGAAACCCTGACCCATTCGTAA-----
----------------------TCGTAAAGAAAAAAAAACACGGTCAAGGATCCAATTTCTGGACCGCCGTAGCCGGAAA
GCCCGGCCCATGCAACCGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCCGCCCGTTC-----------------
--CCCACCCGGAACCGCTGGAGAGCTCGCGAATCTGCTCGTCGTCGCCATCCCCGCCCGCCCCGAT--------------
--CCGTCCGCCGTCTCCCCGTCCGGCTCCCGATGGCGAGGTTCCGGTTGCACTGGCTGGAGGCCATGCTGCCGCTGGGCA
TCATCGGCGGCTTCCTCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAGGGTAACGCCGCTC
CCTTTCCCCATTTCC--CTCTCCCCCGAATCCCGATCCGAATCTCTCTC-------GTGCTGAGGCGGGCGTGTGGTTTG
TTGGATGCAGCCGAAGCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAGCTCGTCGACAAGC
CCGCCGCCAACTAGGTGCGGATCCGATCCCATGCCGCCGCT----------------CCCTCTTGGGTTTCTGGGGTCTC
GGCTCTGTGATGAACTTCTAGGGTTTGGACCGCTGTTGGGTTAGAATAGATCCCTCTTTGTTGTTGGGTACGAGGTGTTT
TTGTGGGGGGTTACTAATTGGGAGTGTCTGCTGGGAATTTGCGCATTTCTCCGCAGCTGGATTGCCATGTTTGATTGGTA
GTGCGTTGCAGACCACTGGAGACTTCGGGATACTTGATTGTCATGTTTGGCTGTTATGCTTCGACTGAATTGGATTGCAG
TGTGCTAGACTTGTACAATTGTACTGGATTTCTGATTTGGTTGTTACTCTATGGTAGCCCCATTTTCGCTATCAAATTGA
TGGTACAGCTTGGGTTCTTGCGGTATTTGAATGTAAGACTAGTTTAGAAAATGGCAGAGCGCGCTCAGCTCTTTTGCAAT
GAGGTAAATGCCATCTGGTTGGGTCTTTTGAGGTGGGAGAAGTGATACTTCGGGTCTGGCAGCGCTTCCTCTGGTCGTGT
TATCCAGTCATCGCAGTGGAAAAGAAAAACTGACTACTTCTGTTTCACAGCTTGCTTTGCCTAGTCTTCTGAAGAATGTT
GATCTAGGAACTACATTTATCTAAGTAGA--CTCTCCAATCTCCTGTGAATACCTGTAGGCTGGCCCCAGAATGGAAACC
ATGATTGTTTTTACACCCTCTAGCAGACTTGCAACGTGATCTTCATGTTACATTGTTCCCCATTTTCCTTTCATTATCTT
GTGATTGCCCGGTCTATTCTTGTCTTCCTCAATAGTATTATCCTTCCCGTGCATCCGTTCACTTCATGAATAACATTAGC
ATTCATGATAATTCTTTGTTTTAACTGTTTACCACTTCACATCGGCATCGTTTGAACAATATTCTTAAAAATGTAGTTGG
ATTCATCTGAAACAATTTTGCCTTCCTTTTCCCGTTGCCTTCCTACAAACAACTGCTATTGACATCACACTG
>chr1B_175
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GGTCAGCCTCGTACTACTACGATGGGAAAAGAAAATAAGCAGAAAAAGAAACTACTACTACAGGAT
CCCGCGAGGGCATACGGAAGATAC----GCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGGAAAGGGCTCCCGG
CCCGAGACAAAAGCGCCATCTCCATCCGTCTCGCACGTCCCCGCCCGGTCTAGCTTTCCATGCTCGCTCTTGCTTCGTGC
AAAGCAGCAATATTTTGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCACCCCTCCTCCTTTT-CC
ATGATCCTGTTTAGTGTAAA--AGAACGCTGGAGTAGTGGAGTGGTTCCAAGTTCCAACTTGCAACCCTTCCGGGATTCC
ATGAGCTGATGAGCACGACCACCGCA-CTGCCCAACTCCAGTTGACATTCTACGGAGTGGCCAACAACATTTTGCATAAA
ATTGTATTTCCTCCGTAAACTAATATAAGGGCATTTAGATCCTCTTGTATGATTATTTTCATAGCTTTTAGTGTGAAATT
ATTAAAATATTTAGATTTTTTTAGCGGAAAACACATTCATATTTCCC---------------------TCTATGACGCCA
TTAGCCCCAACCCATTTCCAACTGAAGGAAACCCTGACCCATTTTCAACTGAAGAAAACCCTGACCCATTTTCATTCGCA
AAAAAGAAACCCTTACCCGTTTTCGTAA--AAAAAAAAACTCGGTCAAGGATCCAATTTCTGGTTCGCCGAAGCCGGAAA
GCCCGGCCCACGCAACTGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCCGCCCGTTCGCCGTCGCGACCTCAGT
TCCCCACCCGCAACCGCTAGATAGCTCGCGAATCTGCTCCTCGTCGCCGT---------CCCCGAT--------------
--CCGTCCGTCGTCTCCCCGTACGGCCCCCGATGGCGAGGTTCCGGTTCCACTGGCTGGAGGCCATGCTGCCGCTGGGCA
TCATCGGCGGCTTCCTCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAGGGTA---CCGCTC
CCTTTCCCCATTTCTCTCTCTCCCCCGAATCCCGATCCGAGTCTCTCTCTCTTCTCGTTCTGACGCGGGCGTGTGGTTCG
TTGGATGCAGCCGAAGCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAGCTCGTCGACAAGC
CCGCCGCCAACTAGGTGCGGATCTGATCCCATGCCTCCTGCATCTTCTGCCGGCGGCCCCTCTTGGGTTTCTGGGTGCTT
GGCTCTGAGACGAAATTCTAGGGTTTGGTCTGGTGTTAAGTTTGAATAGTTCCCT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1A_205
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TAAAATGAGCAGAAA---AAAC--CTACTACAGGAT
CCCGCGAGGGCATACGGAAGATACGCTTGCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGGAAAGGGCTCCCGG
CCCGAGACAAAAGCGCCATCTCCATCCATCTCGCACGTCCCCGCCCGGCCTAGCTTTCCATGCTCGCTCTTGCTTCGTGC
AAAGCAGCAATATTTTGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCCCTCTTCCTCCTTTTTCC
ATGATCCCGTTTAGTGTAAAAAAGAACACTGGAGTAGTGGAGTGGTTCCAAGTTCCAACTTGCAGCCCTTCCGGGATTCC
ATGAGCTGATGAGCACGACCAACGCACCTCCCAAACTCCAGTTAGCATTTTTTGGAGTGGCCAACAACATTTTATACAAA
TTCTA---------------------------------------TTATATAATTATTTCATATTTTATA----------T
ATGAAAATATTTACATTTTCGTAGCGGAAAACACATTCATATTTC--------------------TCTTCTATGACGCCA
TTAGCCCAAACCCATTTTCAATTGGATAAGACC-----------------------------------------------
---------------CCCATTTTCGTAAAGAAAAAAAAACTCGGTCAAGGATCCAGTTTCTGGACCGCCGAAGCCGGAAA
GCCCGGCCCATGCAACCGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCTGCCCATTC-----------------
--CCCACCCGCAACCGCTGGAGAGCTCGCGAATCTGCTCCTCGTCGCCGT---------CCCTGCCCGCCCCGATCCGTC
CGCCGTCCGCCGTCTCCCCGTCCGGCTCCCGATGGCGCGGTTCCGGTTGCACTGGCTGGAGGCCATGCTGCCGCTGGGCA
TCATCGGCGGCTTCCTCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAGGGTA---CC-CTC
CCTTCCCCCA--TCTCTCTCTCCCCCGAATCCCGATCCGAATCTCTCTC-------GTGCTGAGGCTTGCGCGTGGTTTG
TTGGATGCAGCCGAAGCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAGCTCGTCGACAAGC
CCGCCGCCAACTAGGTGCGGATCTGATCCCACGCCTTCTGAATCTCCTGCCGGTGGCCCCTATCAGGTTTCTGGGGGCCT
GGCTCTGACGTGAAATTCTAGGGTTTGGGCTGGTGTTAAGTTAGAGTAGTTCCCTTC-TGTTGTTGGATACGAGGTGTTT
ATGTGGGGGGTTACAAATTGGGAGTGCCTGGTGGGAATTTGCGCATTTCTCCGTAGCTGGGTTGCCCTGTTTGATTGGTA
GTGCGTTGCAGATCACTGGAGACTTCGTGATACTTGATTGTCATGTTTGGCTGTTATGCTTTGACTGAATTGGATTGCAG
TGTGCTAGACTTG--------TACTGAATTTCTGATTTAGTTGTTACTC----GTAGCCCCATTTTCGCTATCAAAGTGA
TGGTGCAGCTTGGGGTCTTGTGGTATTTGAATGTAAGGCTAGTTTAGAAGATGATAGAGCAC-------------GCAAT
GAGGTAAATGCCAACTGGTTGGGTCTTT-GAGGTGGGAGAAGTGTTACTTCGGGGTTGGCAGCGCTTCCTCTGGTCGTCT
TCTCAAGTCATCGCAGTGGAAAATAAAAACTGACTACTTCTGTTTCACAGCTTGCTTTGCCTAGTCTTTTGAAGAATGGT
GATCTAGGAACTACATTTATCTAAGTAGTCTCTCTCCAGTCTCCTGTGAATACATGTAGGCTGGCCCCAGAATGGAAACC
ATGATTGTTTTTACACCCTCTAGCAGACTTGCAACGTGATCTTCATGTTACATTGTTCCCTATTTTCCTTTCATTATCTT
GTGATTGCCCGGTCCATTCTTGTCTTCCTCAATTGTATTATCCTTCCCGTGCATTCGATCACTTCATGAATAACATTAGC
ATTGATGATAATTCTTTGTTTTAACTGTTTACCACTTCACATTGGCATTGTTTGAGCAATACTCTTAAAAATGTAGTTGG
ATTCATCTGAAGCAATTTTGCCTTCGTTTTCCCGTTGCCTTACTACCAACAACCGCTATTGATATCACACTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---------------------------------------S--------------------------
-------S-------S--------------------------------------------------S-------------
-----------S--------------------------------------------------------------------
----S---------------------------------------------------------S--------------S--
-------------------------------------------S------------------S-----------------
---------------------S------------------------------S-------S-SS-------SS-------
--S----------------------------------------------S------S------S----------------
-------S-S---SSS---------S-------S-----S----SSSSSSSSSSSSSSSSSSSSS------S--------
------------------------------------------------S--S--S---------------SSS-S-----
----------------------------------------S-----------------------------S---------
--------------------------------------------------------------------------------
----------S----------------------------S--------S-SSSSSSSSS---------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------SSS------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-----------S--SSS-----------------------------------S--S
-------S------S-------------S-S-S----SS----------S-----SSS---------S------------
S-------------S-----------S---S----------------------S------S-----S-------------
------------S--------------S---------------------------------S------------------
-------------SSSSSSSS-----S-----------S----------SSSS-----------------------S---
----S---------S-----S----------------S-----------S---SS-----S-SSSSSSSSSSSSS-----
-------------S--------------S---------------S---------SS----------------------S-
-S--S------------------S--------------------------------------------S---------S-
----------------------------S---------S--------------S--------------------------
------------------------------------------------------------S-------------------
--------------S------------------S--------------------S--S----------------------
---S--------------------------------------S-----S------S-----S------------------
-----------S-------------S---------------S----S------S--------S---------
>forward_632
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGGAGTGGGCGTCAACATTA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_1901
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GCGCTCAGCTCTTTTGCAAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
