>input_sequence_84664
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------------------------ATGGCTTCCTCGCGTGCCATTATGATACTTTCCTTGTTTGCGTTGGCATTGCCGCA
CTCTGTTGTGCAGGCTAGGATGATGCCAAGTGATCAACCACAGATGCTCGCTGAGAAGACGATCAGCCCACCTCGATACT
CGTCATCTCCAGATTTGCTTCAAGTGTTCAGGGCGCCACCACCGCCAATCCCTGTTACGTTTGCTGGGAACATTGAGATC
ACCGGTGCCAAGCGTAGGCGTGCTAGCCAGGTCGTCGTTAAGGGCTCAGTTCCGAGCCCCGGAGTCGGTCACCACTAG--
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>chr1A_1_TraesCS1A01G123700
CTATGCCCAGTGCACCACTCGGAAAAGTGTAGATAAAAGTAAAAATAAGAGAAAAAATAGTAAACTAATAAAATGCTTTT
GACAAGTACGCCACTAGATAAAAAATTGCAAACAGAGAAAATAAAATGGT-AAATAACAAAAAAAAATGTCCAACACCTA
CTCGGCAAAGAAAAAATG--CAAAAAGTACAAAGAGGAGAAAATAAAACGGTAAAATAATAATAAGACA-----------
-TT------------ACTCCCCTCGGCAAATAGAAAGAATAATAAAACAAACAAAA-GAACGAAAGTAAAAGAGCACTAT
TGGCGCAAAATCTTTG-CGAGGACCCAACTCATCAAACACTATGACAACGTCAATGTTCCCTCAGGCCTCAGCTATCGCC
ACTTGGGACTCGTGTCCAGCCATTTGCCGAGTTCTAGGTTTTTGACTAGTGTTGCACTCAGCAATGTGCTCTTTTTGCCG
AGTTCTTTGTCGTTGCTATGTTTTTTCCAATGAA-AAAAATAGCATGGTATAGCAAAATAGCCTAGT-CTATTAGCAATG
CTACATCACACTAAAACGTGCTATTAACGAGACATTGTACACTGAATTATTTAAAGAGCCATTTTTCAACACACTACAAC
G-TGATATTTGCGCCACTATAGCGCGCTA-TTTTTCCGGTGTTTTTTTCCGATGTACTTGGCTTTTTTCATCTTTACCAA
GTGCCCGATAAAATGAACTTGACAAACAAGCTCTATTATTTGTGTCGGTCCAAAGAAAACGTGATAGTGATGTGTTCTCA
CTAAGTTGACTCAGCCACGAACTCCATCATCA--CCGCCACTCCACACACAGTCGCACATACTTGGTGGCCAGCTGCAAC
TCCT-A-----CCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCACATTCACCTCATCGCATATTTGCACCCATTCC
GTTCCT-----------------TCTTACACAAAGAATTTCGTACAGATATACACTCACA------TTAGACTCTTCGAA
CTTAGCTCGATCGATTTTATTGACATGGCTTCCTCGCGTGCCATTATGATACTTTCCTTGTTTGCGTTGGCATTGCCGCA
CTCTGTTGTGCAGGCTAGGATGATGCCAAGTGATCAACCACAGATGCTCGCTGAGAAGACGATCAGCCCACCTCGATACT
CGTCATCTCCAGATTTGCTTCAAGTGTTCAGGGCGCCACCACCGCCAATCCCTGTTACGTTTGCTGGGAACATTGAGATC
ACCGGTGCCAAGCGTAGGCGTGCTAGCCAGGTCGTCGTTAAGGGCTCAGTTCCGAGCCCCGGAGTCGGTCACCACTAGCT
CGCCGATCCTCTAATGAAGTGAATATATTTTCTCTACATTTCACACATATCGATCTACATGA-------ATGGCGC--AT
ATGCCGTTCAACATATTGGCTAGCTAGCTGGTGCCA---------CAAAGATTAGCTACTTAGGTTAAACAAAGCATATA
CATGTAACCATGAAAAGCGCAACATGCTCTTGAATCGTACTGCCTTGATTTGTATCTTTTTTTTTTCTGTTCGAGAATAT
GTCATGAAAGGCACACCAGTTTCATATATATGTAACAAAACATATA----------------------------------
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-----------TACTGTCGTGAATAAATGAATATTTATATTCAATTCTCAACTTGGTTGCTGTCATTTTGGATTGTTTCA
TCACTTCTG--TTTTTTCCCTTGAGGCACCTTCGATTGTAATTTTTGTTGGTAGCTTACCAAGCTGACCGCTTGGTTTTT
CTTGAGGTACCTTGAGTTATTATTAATTGTGATGTATCCAGCTGACTGGATTGCATCAAGACTTATCTGGCGCGAAGAAA
CATATCATAATTTAGAACTTTAGCAGGTTACAAACTAAACATGCGTCTACACACAAA-----AAAAAAAGCTGAATATGC
ATCGACCTTGCTCAATTGCTGTCTTCGAATTACAATGTCGTGTTTCATGCATTTCTCTCGATTCGCTGTGATTATGACCA
ATGGATAAGCTAGTGCTAACACTGTGATGATGTGTCTTT----ACCAAC-AAAAAATATCTGACAAAATACTCCCTCCGT
CCCGAAAAACATGTCGCGGGCATAGTTCATTGGTAATTTTGCAAAAAAAACCTCGTGGTTTCAAAAGCATTTCAAACAAA
TCCCTCCGCCCCGTCTTCTTCCTCCGTCCGTCGCCTGCGCATCGCCAGGGGACGGTGCCGCCCAGCTGCGTGATTCGCTA
GGGGCCGGCGAGCCCAGCTAAGCTCCTCCGCCGTCGCCAAGTACAAGCTCTCGCCGCCATCGGCAGTTACCTCCTCCACT
GCCGCAGCCCAGACCTGCGCCGCCGCGGTCCTC
>chr1D_4
---TGCCGAGTGCACCACTTGGGAAAGTGTAGATAAAAAATAAAACAAGAGAAAAAATAGTAAACTAATAAAATACTTTT
GACAAATACCTCACTAGATAAAAA--TGCAAACAAAGAAAATAAAATGGCAAAATAACAGGAAAAAATGACAGAAACTCA
CTCGGCAAAGATTC-TTTTACAAAAAGTACAAAGAGAAGAAAATAAAACAGTAAAATAATAATAATACATTTGTCTAGTA
CTT------------AATCCGCTCGGCAAATAGAAAGAATAATAAAACAAA-AAAA-GAAATAAAGTAAAAGAGCACTAT
CATCGCAAAATATTTGCCGAGGACCAAACTCATCAAACACCATGACAACGTCAACGCTC-------CCTCAGCTGCGGTC
ACTTGGGACACGTGTCCAGCCATTTGCCGAGTTTTAGGTTTTTGCATAGTGTTGCACTCAGCAATG--CTCTTTTTGCCG
AGTTCTTTGTCTTTGCTATGTTTTTTCC----AATAAAAAAAGTGTGGTATAGCAAAATAGCGCCGGCCTATTAGCAATG
CTACATCGTGCTAGAGCGTGCTATTAGCGAGGCATTGTACACTGCATTATTTAGCGAGCCATTTCTCAGCATACAATAGC
ATTGCTATTAGCGGCGCTATAGCGCGTTATTTTTTCCAGTGGTTTTTGCCTATGTAATCGGCTTTTTTCATCTTTACCAA
GTGCTCGATAAAATGAACTTGACAAAAAAGCTCTATGATTTGTGTCGGTCCAAAGAAAACGTGATAGTGATGTGTTTTCA
CTAAGTTGACTAAGCCACGAACTCCATCATCA--CCGCCACTCCACACACAGTCGTACATACTTGGTGGCCAGCTGCAAC
TCCT-ACCTCTCCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCACATTCACCTCATCGCATATCTGCACACACTAG
ACAAACCC-----ATTCAGTTCCTCTTACACAAAGAATTTCGTACAGATATACACTCACA------TTAGACTCTTCGGA
CTTAGCTCGATCCATTTTATTGACATGGCTTCCTCGAGTGCCATTATGATACTTTCCTTGTTTGTGTTGGCATTGCCGCA
CTCTGTTGTGCAGGCTAGGATGATGCCAAATGATCAACCACAGATGCTCGCCGAGAATACGATCGGTCCACCTCCATACT
CGTCATCTCCAGATTTGCTTCAAGTGTTCATGGCGCCACCACCGCCAATGCCTGTTACGTTTGCCGGCAGCATCGAGATC
ACCGGTGCCAAGCGTAGGCGTGCTAGCCAGGTCG---TTCAGGGGTCCGTTCCGAGCCCCGGCGTCGGCCATCACTAGCT
CGTCGATCCTCTAATCAAGTGAATATATTTTCTCTACGTTTCACACATATCGATCTATATGA-------ATGGTGC--AT
ATGACGTCCAACATATTGGCTAGCTAGCTGTAGCCA---------CAAAGATTAGCTACTTAGGTTAAACAAAACATATA
CATGTAACCATGAAAAGCGCATCATGCTCTTCAATCGTACTGCCTTGATTTGTATCTTTTTTTTTTCTGTTCGAGAATAT
GTCA-GAAAGGCATACCAGTTTCATATATATGTAACAAAACATATA----------------------------------
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-----------TACTATCATGAATAAATGAATATTTATATTCAATTCTCAACCTGGTTGCTGTCAGTTTGGATTGTTTCA
TCACTTCTAA-TTTTTTTTCTTGAGGCACCTTTCATTGCAATTTTTGTTGGTAGTTTACCAAGCTGACCACTTGGTTTTT
CTTGCGGTACCTTGAGTTATTATTAATTGTGATGTATCCAGCTGACTGGATTGCATCAAGACTTATCTGGCGCGAAGAAA
CATATCATAATTTAGGACTTTAGCAGGTTACAAACTAAACATGCGTCTACACACACACACACAAAAAAAGCTGAATATGC
ATCGACCTTGCTCAATTGCTGTCTTGGAATTACGATGTCGTGTTTCGTGCATTTCTCTTGATTCGCTGTGATTATGACCA
ATGGATGAGCTAGTGCTAACACTGTGATGACGTGTCTTTCTGTACCAACAAAAAAATATCTGACAAAATAC---------
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>chr1B_6
CCCGAG----TGCACCACTCGGGAAAGTGTAGATAAAAAATAAAACAAGAGAAAAAATAGTAAACTAATAAAATACTTTT
GACAAATACCTCACTAGATAAAAAA-TGCAAACAAAGAAAATAAAATGGCAAAATAACAGGAAAAAATGTC--ACACTCA
CTCAGCAAAGTTTTTTTTTACAAAAAGTACAAAGAGAAGAAAATAAAACAGTAAAATAATAATAAGACA-----------
-TTTTCCTAGTACTTACTCCGCTCGGCAAATAGAAAGAATAATAAAACAAA-AAAAAGAAAGAAAGTAAAAGAGCACTAT
CATCCCAAAATCTTTGCCGAGGACCAAACTGATCAAACACCATGACAACGTCAACGCTC-------CCTCAGCTGCGGCC
ACTTGGGACACGTGTCCAGCCATTTGCGGAGTTTTAGGTTTTTGCATAGTGTTGCACTCAGCAATG--CTCTTTTTGCCG
AGTTCTTTGTCTTTGCTATGTTTTTTCC----AA-TAAAAAAGTGTGGTATAGTAAAATAGCGCCGGCCTATTAGCAATG
CAACATCATGCTAGAGCGTGCTATTAGCGAGACATTGTACACTACATTATTTAGCGAGCCATTTCTCAGCACACAATAGC
ATTGCTATTAGTGATGCTATAGTGTGTTATTTTTTCCGATGGTTTTTGCCTATGTACTCAGCTTTTTTCATCTTTACTAA
GTGCCCGATAAAATGAACTTGACAAAGAAGCTCTATGATTTGTGTCGGTCCAAAGACAACGTGATAGTGATGTGTTTTCA
CTAAGTTGACTAAGCCACGAACTCCATCATCA--CCGCCACTCCACACACAGTCGTACATACTTGGTGGCCAGCTGCAAC
TCCT-A-----CCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCACATTCACCTCATCGCATATTTGCACACACTAG
ACAAACCC-----ATTCAGTTCCTCTTACACAAAGAATTTCGTACAGATATACACTCACA------TTAGACTCTTCGGA
CTTAGCTCGATCCATTTTATTGACATGGCTTCCTCGCGTGCCATTATGATACTTTCCTTGTTTGTGTTGGCATTGCCGCA
CTCTGTTGTGCAGGCTAGGATGATGCCAAATGATCAACCACAGATGCTCGCCGACAATACGATCGGTTCACCTCCATACT
CGTCATCTCCAGATTTGCTTCAAGTGTTCATGGCGCCACCACCGCCAATGCCTGTTACGTTTGCCGGCAGCATCGAGATC
ACCGGTGCCAAGCGTAGGCGTGCTAGCCAGGCCG---TTCAGGGGTCCGTTCCGAGCCCCGGCGTCGGCCATCACTAGCT
CGTCGATCCTCTAATCAAGTGAATATATTTTCTCTACGTTTCACACATATCGATCTATATGA-------ATGGTGC--AT
ATGCCGTCCAACATATTGGCTAGCTAGCTGTAGCCA---------CAAAGATTAGCTACTTAGGTTAAACAAAACATATA
CATGTAACCATGAAAAGCGCATCATGCTCTTCAATCGTACTTCCTTGATTTGTATC-TTTTTTTTTCTGTTCGAGAATAT
GTCATGAAAGGCATACCAGTTACATATATATGTAACAAAACATATATACTCCCTCCGTCCGAAAATACTTGTCATCAAAA
TGGATAAAAAGAGATGTATCTGGAACTAAAATACGTCTAGATATATCCCCTTTTGTCGATTTTGATGACAAATATTTCCG
GACGAAGGAAGTACTATCATGAATAAATGAATATTTATATTCAATTCTCAACCTGGTTGCTGTCAGTTTGGATTGTTTGA
TCACTTCTATTTTTTTTTTCTTGAGGCACCTTTCATTGCAATTTTTGTTGGTAGCTTACCAAGCTGACCACTTGGTTTTT
CTTGAGGTACCTTGAGTTATTATTAATTGTGATGTATCCAGCTGACTGGATTACATCAAGACTTATCTGGCGCGAAGAAA
CATATCATAATTTAGGACTTTAGCAGGTTACAAACTAAACATGTGTCTACACA-AAA-----AAAAAAAGCTGAATATGC
ATCGACCTTGCTCAATTGCTGTCTTGGAATTACGATAACTTGTTTCGTGCATTTCTCTTGATTCGCTGTGATTATGACCA
ATGGATGAGCTAGTGCTAACACTGTGATGACGTGTCTTTCTGTACCAAC-AAAAAATATCTGACAAAATAC---------
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>chr6A_718
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------------------------------CTCTATGATTTGT-TCGGCCGAAAGAAAAT-TGATAGTGATGGGTTCTCA
CCAATTTGACTAAGCCACAAATTCGATCGTCA--CCGCCACTCCACACTCAGTCGCACATACTTGATGGCCTGCTGCACC
TCCTCC-----CCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCACATTCACCTCATCGCATATTTGCATACACTAC
AGAAACCC-----ATTCAGTCCCTCTCTCACAAAGAATTTCGTACAGATATACACTCACGTTAGAGTTAGACTCTTCGAG
CTTAGCTCGATTGATTTTACTGACATGGCTTCCTCGCGTGCCATTATGATACTTTCCTTGCTTGTGTTGGCATTGTCCCA
ATCTGTTGTGCATGCTAGGATGATGCCAAGTCATCAACCACAAATGTTCGCCCAGAAGACGACCACTCCACCTCCATACT
CGCCATCTCCAGATTTGCTTCAAGAGTTCATGGCGCCACCGCCGCCAATGCCGGTTACGTTTGCCGGCAACATGGGGATC
GCTGGTGCCAAGCGTAGGCGTGCTATCCATGTCG---TTCAGGGGTCGGTTCCGAGCCCCGGCGTCGGCCATCACTAGCT
CGTCGATCTTCTAATCAAGTGAATATATTT-CTTTACATTTTACACATATCGATCTATAATTCTATATGATGGTAC--AT
ATGCCGTCCAACATAATGGCCAGCT----GC-----------AGCCAAAGCTTAGCTATTGAAGCTACACAA-GCATATA
CATGTAA-------------------------------------------------------------------------
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>chr6B_718
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------------------------------CTCTATGATTTGT-TCGGCCGAAAGAAAAT-TGATAGTGATGGGTTCTCA
CCAATTTGACTAAGCCACAAATTCGATCGTCA--CCGCCACTCCACACTCAGTCGCACAAACTTGATAGTCAC------C
TCCT-C-----CCTCTCGTCACCTATAAATACATGCCCAGGCTGCTCGCATTCACCTCATCGCACATTTGCAGACACTAC
ACAAACCCATTCAATTCAGTTCCTCTCTCACAAAGAATTTCGTACAGATATACACCCACATTAGAGTTAGACTCTTCGGG
CTTAGTTCGATTGATTTTACTGACATGGCTTCCTCGCGTGCCATTATGATGCTTTCGTTGCTTGTGTTGGCATTGTCGCA
CTCTGTTGTGCAGGCTAGGATGATGCCAAGTCATCAACCACAAATGCTCGCCGAGAAGACGACCGGTCCACCTCCATACT
CATCATCTCCAGATCTGCTTCAAGTGCTCATGGCGCCACCGCCGCCAATGCCGGTCACATTTGCCGGCAACATGGGGATC
GCTGGTGCCAAGCGTAGGCGTGCTATCCATGTCG---TTCAGGGGTCGGTTCCGAGCCCCGGCGTCGGCCATCACTAGCT
CCTCGATCTTCTAATCAAGTGAATAAATTT-CTTTACATTTTACACATCTCGATCTATAATTCTATATGATGGTAC--AT
ATGCCGTCCAACATAATGGCTAGCTAGCTGC-----------AGCCAAAGCTTAGCTATTGAAGCTACACAA-GCATATA
CATGTAA-------------------------------------------------------------------------
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>chr6D_718
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------------------------------CTCTATGATTTGT-TCGGCCGAAAGAAAAT-TGATAGTGATGGGTTCTCA
CCAATTTGACTAAGCCACAAATTCGATCGTCACGCCGCCACTCCACACTCAATCGCACAAAGTTGATCGTCAC------C
TCCT-C-----CCTCTCATCACCTATAAATACATGCCCAGGCTCCTCACATTCACCTCATCGCATATTTGCAGACACTAC
ACAAACCC-----ATTCAGTCCCTCTAGAGTT-------------AGATATACACTCACGTTAGAGTTAGATTCTTCGGG
CTTAGCTCGATTGATTTTACTGACATGGCTTCCTCGCGTGCCATTATGATACTTTCCTTGCTTGTGTTGGCATTGTCGCA
CTCTGTTGTGCAGGCTAGGATGATGCCAAGTCATCAACCACAAATGCTCGCCGAGAAGACGACCACTCCACCTCCATACT
CGCCATCTCCAGATTTGCTTCAAGTGTTCATGGCGCCACCGCCGCCAATGCCGGTCACGTTTGCCGGCAACATGGGGATC
ACTGGTGCCAAGCGTAGGCGTGCTATCGATGTCG---TTCACGGGTCGGTTCCAAGCCCCGGCGTCGGCCATCACTAGGT
TGTCGATCTTCTAATCAAGTGAATATATTTTCTCTACATTTTACACATATCGATCTGTAATTCTATATGATGGTACATAT
ATGCCGTCCAACATAATGGCTAGCT----GCAGCCAAAGCTTAGCCAAAGCTTAGCTATTGAAGCTACACAA-GCATATA
CATGTAA-------------------------------------------------------------------------
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>SNPs
-SS----S--------------S---------------SSS----S----------------------------S-----
-----S---SS--------------S--------S--------------S---------SS----------SS----SS-
-----------SSSSS-S------------------S------------S------------------------------
--------------------S------------------------------S--------S-------------------
SSS----------------------S--------------S-------------S-S--SSSSSSS--------SSS---
---------S-----------------------S----------SS--------------------SS------------
-----------S----------------SSSS--------S--SS-----------------SSS-S-------------
--------SS---S-S----------S-----------------S--------SS---------S---S-----S-S-S-
S---S----S---S-S----------S--------------S-----S--S-------S---------------------
--------------------------S---------S-------------------------------------------
-----------S--------------------------------------------------------------------
-------------------------------------------------------------------------S--S-S-
SSSSSS--------------------------------------------------------------------------
----------------------------------------------------------------S---------------
---------------------------------------------------S--------------S-------S-----
------------------------------S------------------S--------------S--S-----S------
----------------------------------SSS--S----S--S--------------S-----S--S--------
--S------------S-----------------------------------------S---------------S------
-------S----------------------SS------------------------------------------------
---------------------S---------S------------------------------------------------
-------------S------------------------------------------------------------------
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---------------S--S---------------------------------S------------S--------------
--------S--------SS-------------SS----S------------------------------S----------
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---------------S----------------------------------------------------------------
-------------------------S-------S------------S-----------S---------------------
------S-----------------------S----------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_396
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--------------------------------------------------------TTCCCTCAGGCCTCAGCTAT----
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>reverse_1858
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-----------------CCCTTGAGGCACCTTCGATT-------------------------------------------
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