>input_sequence_84587
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-----ATGAGGCTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGCTCTGTCGGCTACAAATGTGCTGTCGCCA
GTTGGTGTGTGGGCGAGGACGCCAGGGAGAGCGCCACCTTCGCCGACGCCGTCCGCGCTCAGGGGCCGCGTGAAGCCGAT
TAATCCCGCGCCACAGCCTCCGCCACCAGCGGAGATGGGTAGAGTGCGGCCATTGCGTTCACCGCCTCCGCGACCATCAC
CAAATCACCAGCGAAGCGTCGGCTCTACGCACTTTCCTCCACCACCATTAAGGTGCTACTAG------------------
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>chr1D_1_TraesCS1D01G177600
CCCGACGTCGGAGATCTCCAGTCCGAAGTTCCCGAAGGGCGACCGAAGAAACCGGACTTGCCCTTCGGCGTCTTCTTCGG
CGCCATCGGGGAGCGGCCGGTGGCCGAGCGGGGAGCGGGGCGGCGACGTGCGGAGCGGGGCGGAGGCAGACGGAGCGGGG
CGGAGGCGGACGGAGCGGGCGGCGGACGGAGCAGCGCCAGAGAGGAGGCGGACGGAGCGGGGCCAGGCGGAGGATGGACC
GGAGGCGGATGCGTCCGGAGAGGAGGCGGGCAGGGTCAGGGCGAGCGAAGGCGAACGCGATGGGGCAGCGCGGCGGCAGG
CAGTGGCCAAGGCGGGGTGGAATCAGTGGCGGGGGTCTGGATCTACGGCGGGGCGAGGCCTTAAAAAGTTAACACGTAAC
TCTTGCAAACTACTCCCTCTGTTCCATAATGTAAGATGTTTTTTTACATTAATGTAGTGTCAAAAAGCGTCTTATATTAT
GAGACGGAGGGAGTATTTCAAGAGCCCGTGACTCTGCCGAGGGCTCCCCGGTAGGTTCTAGTCTCTCTTTATACACTCTA
CTAGTTACCAGTAGTATCACGTGGTTGTAGCCCTCCCACTTCCCCGCATTACCAGGATCACCACAGATCTGCAG------
-TTTGGAGTTTACTTTCAGTCTTAGCCAATCTTCAATCAGCAATGTGACGATATGAATTTTTTAGTTCCCTTTGATCCGT
GAGAATTTTACCCAGCACGTGTTGATATATATCGAACTGTTCCATGTGAATTCTTTGACACTTATCTTTCTCGAAGTGTT
GTCAGGAAGAAATCTTTGGATGTCTACAGAGCTCAGTCGCTGGTTGCATTGACAAACAAGCCATGTGCGCCATCTAATAA
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-----------------------------------CAAAGCCACGCGCCCCAAGATTTCCCAAATAAATGCAAATCCGTC
AACCACCCCAGGTTTTCAG---TATAAGTTCAGATCATCTCTGTAAGAGCAGCAATGTTCATTTCCTTTTTCTCTTGCGT
CCAAGATGAGGCTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGCTCTGTCGGCTACAAATGTGCTGTCGCCA
GTTGGTGTGTGGGCGAGGACGCCAGGGAGAGCGCCACCTTCGCCGACGCCGTCCGCGCTCAGGGGCCGCGTGAAGCCGAT
TAATCCCGCGCCACAGCCTCCGCCACCAGCGGAGATGGGTAGAGTGCGGCCATTGCGTTCACCGCCTCCGCGACCATCAC
CAAATCACCAGCGAAGCGTCGGCTCTACGCACTTTCCTCCACCACCATTAAGGTGCTACTAGATCTATGTTTCGACTTAA
TCTTGATCTGTAAAGATCATGTTATTGGTTCTCTTTACCAAGAACGCTTCTGTGTAACGCTTGTGTAAACACCGTGTTGT
GAAACATGCTGAGATTCTTGCTTTACCTTTTCTATTATCTTCACAAATACTCCCTCCATTCATTGTTATAAGATGTTCTA
GTTTTCTTGAATGACAGACGTA--------TTTTAGTGTGTTTGTTTACTCATTTCTATCTATATCTAGTCTATATTAAA
ATATTCAAAACGTCTTACAATAGTGGTAAGGC------------------------------------------------
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---------------------------------------------------TGAACGAAGAGAGTACATTGTAATCGTAT
GTTTATGTTTAGAAAAATAAACTGAACATGTTAGTCTACGTCCGGTACGCCTACGACAGTAGACACCGT-GTGTCTGAAA
TTTGACTTCACACATGATGTTACG-------------ATAGTAGACACTCAGTGTGTTCGAAATTTGACTTAACACATGA
TGTG-----------------TTGTAATTGAACGTTTTTCACGTACAAGGACTAAATTTAAGGTAAAAACTCTATATTTA
CAGATCTAATCTACATAGTATGAAGCTATCTATGAAGTATGGGATCATCTGGGCCGG---------------GTTTCAGA
GAGGCTATCTATGAAGCTTATGTGCAAAGTGGACATAAAGCCTTTACGTTGGAAATTTTATTCCGCGGACAGCGGCTTGG
TCCGGCGTTGC--CTCCTGGCGTGGGGTGGCACCAGCTACTCACGT-GACAACTTGGTACGTGTGGTGAGAGCAGTGACA
AACGATGCATGAGGAACGTGTCCAGGCGCCAGTCCACTCGGTGCAGGAAATCCTGGCACTTTCCATGAATTTTTGTAGAG
CGAAGAGGCCAAGTTCTGGCATTGCGCGACATGGATGGATCAAACCTCCAGCTGATTTCGTTGCGGTAAACGTGGATGTA
TCTCTCCTTAGTGATGACGAACGTGGAGCAATAGGGGTGGTTCTCAAAGATGAACATGGTAATTTTATTGTTGCTGATAG
AAGACCAGTCAATTTCAT
>chr1B_554
CACTCT--------------------------------------------------------------------------
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-TAATTAGCAGTAGA--CACGTGGTTGTAGCCCTCCCACTTCCCCGCATTATCAAGATCGCCACAGATCTGCACTTTGGA
CTTTGGAGTTTACTGTCAGTCTTAGCCAATCTTCAATCAGCAATGTGACAATATGAATTTTTTAGTTCCCTTTGATCCGT
GAGAATTTTTGCCAGCACGTGTTGATAT----CGAACTGTTCCATGTGAATTCTTTGACACTTATCTTTCTCGAAGTGTT
GTCAGCAAGAAATCTTTGGATGTCTACAGAGCTCAGTCGCTGGTTGCATTGACAAACAAGCCATGTGCGCCCTCTAATAG
CAG-----------------------------------------------------------------------------
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---------------------------------------GCCATGCGCCCCAAGATTTCCCAAATAAATGCAAACCTGTC
AACCACCCCAGATTTTTACTACTATATGTTCAGATCATCACTGTGAGAGCAGCAGTGTTCATTTCCTTTTTCTCTTGCGT
CCAAGATGAGGCTGTTCTTCAGGCTCTTCGCCGTCTTAGCCATCATGGCTGCTCTGTCGGCTACAAATGTGCCGTCGCCA
GTTGGTGTGTGGGCGAGGACGCCGGGGAGAGCGCCACCTTCGCCGACGCCGTCCGCGCTCAGGGGCCGTGTGAAGCCGAT
TAATCCCGCGCCACAGCCTCCGCCACCAGCGGAGATGGGTAGAGTGCGACCATTGCGTTCACCGCCTCCGCGACCATCAC
CAAATCACCAGGGAAGCGTCGGCTCTACAAACTTTCCTCCACCACCATTACGGTGCCACTAGATCTATGTTTCGACTTAA
TCTTGATCTGTAAAGATCATGTTATTGGTTCTCTTTACCAAGAACGCTTCCGTGTAACGCTTGTGTAAACACCGTGTTGT
GAAACATGCTGAGATTCATGCTTTACCTTTTCTACTATCTTCACAAGTACTCCCTCCGTTCATTACTATTAGATGTTCTA
TTTTTTTTAAATGGGATATATGTAGACGCGTTTTATTGTGTTTGTTCACTCATTTCTGTCCATATCTAGTCTATATTGAA
CGATCCAAAACGTCTTATAACAGTGATAAGAGTGAAAGGAGTGAAAATTGCTTTTGGAGCTCGGCCTGCATGGAGGCCTC
CAAATTCAAATTTCAAAATTCATGAAAATTCATTTTTTGATGTTTCAAAAAATTCTGAAACAAAAAATATAGATATGCAT
GAAGGCATAACACACATGTGTGTATATTTTCAGGGCAAAATAGGTTGAAATGAGGGTTATGCAAAAAAAGGGACTTTTTA
ACACATGATATTGTTCATCCTCCCATGTCATGAATTTGTCTTTTTTTTCTAGTACTTTCAAGGTATTTCATAAGTTTTCA
CACATATACATAACATCCTTGTTTACTTGCACAAATTTTTTCAGATATTTTTGGAACGGGAAGTTTGAATTTTGATTTTT
TTTTCAAAATTTCAAGCTCCAGTGAGCTCGGTCACCAAAAAGGCGTTCTCGTGAACGGAGATAGTACGTTGTAATCGTAT
GTTTATCTTGAGAAAA-TAAACTGAACATGACAGTCTACGTCCAGTGCGCTTACGAGAGTACACACTCACGTGTCCAAAA
TTTGACTTAACACATAACGTGCATTGTAATTTTTTCAATACTAGACACTC-GTGTGGCCGAAATTTGACTTAACACGTGA
CTTAACACATGACGTAGTACATTGTAATTGAACGTTTTTCACATGCAAGGGCTAAATTTAAGATAAAAACTATACATTTG
CAGATCTAATCTACGTAGTATGAAGCTATCTATGAAGTATGAGATCACATGAGTTAGTATGAGATCACCTGAGTTTCAGA
GAGGCTATCTATGAAGCTTAAGTGCAAAGTGGACATGGAGGCTCTATGTTGGAAATTTTATTCCACGATCAGCGGCCTGG
TCCATCGCTGCCTCTCCTGGCGTGGGGTGGCACGAGCTGCTCGCGTTGACAACTTGGTATGTGTGGTGGGAGTGGTGACA
GACGATGGGAGAGGAAAGCGTCCAGGCGCTAGTCCACTCGGTGCACGCAATTCTGGCCCTTTCCATGAATTTTTGTAGAG
CAAAGAGGCCAAGTTCTGGCATTGCGTGACATGGATGGATCAAACCTCCATCTGATTTCATTGCAGTAAACATGGATGAA
TCTCTCCTTAGTGATGACGTGCGAGGAGCAACAGGGGTGGTTCTCAAAGATGAGCATGGTACTTTTATTGTTGCTAGTAG
AAGACGAGTCGATTTCAT
>chr1A_562
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-TAATTAGCAGTAGTATCACATGGGTGCAGCACTCCCACTTCCCCGCATTACCAGGATCACCACAGATCTGCAG------
-TTTGGAGTTTACTTTCAGTCTTAGCCAATCTTCAATCAGCAATGTGACGATATGAATTTTTCAGTTCCCTTTGATTCGT
GAGAAATTTTCCCAGCACGTGTTGATATATATCGAACTGTTCCATGTGAATTCTTTGACACTTATCTCTCTCCAAGTGTT
GTCAGGAAGAAATCTTTGGATGTCTACAGAGCTCAGTCGCTGGTTGCATTGACAAACAAGCCATGTGCGCCATCTAATAA
GACTGATCGTAACGAGAGTATCATAAACGGTATCATGCATCCTAACTAGATTTTTTAGATAATGTGACATACAATTAAAT
GAGGAAAGAAAGAGTGTAGTATCATATCATGATACCGTATCATATTAAATATTGTATTACTTTGTGTCATGCATAACAAT
TAATAAGACAACCTAAGATACAACTTATGATACTATACATTACGAATGTAGTATCATATACTAATATCATATGCATGATA
CTAGTATATAATATTCCCCATTACAACCAGCTTAACAAAGCCACGCGCCCCAAGATTTCCCAAATAAATGCAAATTCGTC
AACCACCCTAGGTTTTCAG---TATAAGTTCAGATCATCTCTGTAAGAGTAGCAATGTTCATTTCCTTTTTCTCTTGCGT
CCAAGATGAGGCTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGCTCTGTCGGCCACAAATGTGCCGTCGCCA
GTTGGTGTGTGGGCGAGGACGCCGGGGAGAGCGCCACCTTCGCCAACGCCGTCCGCGCTCAGGGGTCGCGTGAAGCCGAT
TAATCCCGCGCCACAGCCTCCGCCACCAGCGGAAATGGGTAGAGTGCGGCCATTGTGTTCACCGCCTCCGCGACCATCAC
CAAATCACCAGCGAAGCGTCGGCTCTACGCACTTTCCTCCACCACCATTACGGTGCCACTAGATCTATGTTTCGACTTAA
TCTTGATCTGTAAAGATCATGTTATTGGTTCTCTTTACCAAGAACACTTCTGTGTAACGCTTGTGTAAACATCGTGTTGT
GAAACATGCTGAGATTCATGTTTTACCTTTCCTATTATCTTCACAAATACTCCCTCCATTCATTGTTATAAGATATTCTA
GTTTTCTTAAATGACGTGTATATAGACATGTTTTAGTGTATTAGTTTACTCATTTATGTCTGTATCTAGTCTATAATAAA
ATATTCAAAAGGTGTTATAATAGTGATAAGAATGAACGGAA---------------------------------------
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------------------------------------------------------------ATAGTACATTGTAATCGTAT
GTTTATGTTTAGAAAAAT---------------GTCTACGTCTGGTATGCTTACGACAGTAGACACCT------------
---------------------------------------------------GTGTTTCTGAAATTTGACTTAACACATGA
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>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--S---S------------------------------------------------------------------------
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---------S----------------------------------------------------------------------
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------------------------------------------------------------------------S-------
-----------------------S--------------------------------------------------------
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--------------------------------------------------S-----S-----------------------
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-----------------S--------------------------------------------------------------
--------S-------S-SS-------------------------------------S----------------------
-----------------S-------S----SS------------------------------------------------
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---------------------------------------------------------S---S------------------
------------------------------SS------------------S----------------SS------SS---
--------S------S-S--SSSS----------------S---------S------S----------------------
SS-S--------------------------------------S-S-----S-----------S--------S--S----S
--------------S--------------------------S-----SS--S-SSS------------------------
--------------------S---------------SS--S--S--S-----------------S--SS-------S---
---SS--S-------------------------S----S---S----------------S--------S---SS------
S------SSS------S-S----------S---------------S-S---S-----S----------------------
-S------------------------S-----------------------S--------S----S------S------S-
-------------------SS--S-------S---------------------S-------S-------------SS---
-----S----S-------
>forward_65
---------------------------------------------AAGAAACCGGACTTGCCCTT---------------
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>reverse_2780
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-----------------------------------------------------------CGTGTGGTGAGAGCAGTGAC-
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