>input_sequence_84586
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---------------------------------------------------------------------------ATGGG
GAGGCGTGGGAAGCTGGAGGTC-AAGAGGATCGACGACGACGGTTCGCGGCTGGTGACCTTCTGCAAGCGGCGCGGCACG
CTGCTGAAGAAGGCGCGCGAGCTCGCCGTGCTCTGCGACGAAGATGCAAGCCTCGGCCTCGTCGTCTTCTCCAGCACCGG
CAACCTCGCCGGTGACTACTGCAGCCCGAATACAAGGTACGTGGCTAGGTTGATCTGTCCCGTCCTGTCCTTAA-TGCA-
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-----------------------------TGCAAGAGC-------------------------------------TCCTG
TGACATATATATTTCCCTTGTCATTTGTTAAGCTGGAGTGA---------------------------------------
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>chr1B_1_TraesCS1B01G467500
CGGCCATTACAAAAGTGGTGCGGTGCTGATCGTGCCGGGCTGGCCATGTATAAATAGCTGGTGCTGCCAGGCCAAGCGAC
GTGATGTTTCAATGCAAGCGCCAGAATGGGTTTCTCGGCCGTCGTTCCTGTTTAATGCTGGCAGGCGGACGGGCGAGCAG
CCACGGTAGAGAGTCATCATGTCCCGTCCGGTCAAGTGTCCCCGGGATTGAACAGGCGTAGAGACCAGGACCGTACCGGT
TCAATTTCGGCTCGAGTGAACGTCGCGTCTGCTCCTGGCCGGCATGAATGCGATTTGGGAGCCGGAGGTGCGTTCATGCG
GGAGATGGCGCGGGAGGGGTTCTTTGGTGGGATCAAGGTGTAGGACACGTATGTGGCGGTGGCCGGACACCCGCAAAGCT
CCTCTAATTTACGTCCGGTTTATGAGATTTCGAGCAAACGAAAGCGTCTGCGGGCGAATGTGGTACCGCATTGCTTGAAG
CATCCGGACGGCTATGTCCTGATGTTTTGAGGGGCCGCGTTGAAGATGCTCTGCCGCGTGTGTGGGTGTGGTGAGATGAC
AACTACATGGTGTGGCACCCCACAAATTAACTAGCCGCCCCTACTAGGGATGTAAGTGGCAAATAAATGGCGTCCACAAG
CCCGTTTAGTTAGATTTTTTCTAGCTCTATAATTCATTTTTCTCAAATAAAAAAAACTTGTTTGAACTATCCTATTATAA
ATGGACTTTAAACGGGATTAAATGGGATCCAGTTGACATCCCTAGCCCCTACTGGACATATTGACTGACTTGCATGCCGG
GAATAATGGGCATGCCGTGTGAAAAGAACCTTGACGCTAGCTACAAATACAATGCCTTCTCCTTCTCCTTGTGGCCGCGG
GCGTACTGAGTGACCACTTCCGAGCTTCGTGCTGCTCCGTCGACCTCTTCTCTTCTACCCAGCGAGCTGTCGCCGCT---
-------------------------------CGCATCGCTAGTCCCTCCCAAGTCCCAACTCTGAGT-GATTAAGATGGG
GAGGCGTGGGAAGCTGGAGGTC-AAGAGGATCGACGACGACGGTTCGCGGCTGGTGACCTTCTGCAAGCGGCGCGGCACG
CTGCTGAAGAAGGCGCGCGAGCTCGCCGTGCTCTGCGACGAAGATGCAAGCCTCGGCCTCGTCGTCTTCTCCAGCACCGG
CAACCTCGCCGGTGACTACTGCAGCCCGAATACAAGGTACGTGGCTAGGTTGATCTGTCCCGTCCTGTCCTTAA-TGCA-
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-----------------------------TGCAAGAGC-------------------------------------TCCTG
TGACATATATATTTCCCTTGTCATTTGTTAAGCTGGAGTGAGCTCATTCAGCGCTACGAGCGCGAG------AGCACCAC
CAGCACCCAGCGGTCCCAGCTCCAGCCTCCAGGGGAAACTGCAAACCAGAACGATGGGGTGGTGATGATCATCAGGTGCC
TATGCTACTTTACT------------------------------------------------------------------
--GTACA-TACGTACAAGGAGCGATTTGTGCACTTAGCAATGAACTTTAATTTGGTCGTTCCTGCGTCCGTG------CA
GCAAGTGTTGACGGAGGCGGCGAAGTTGACGCATGAGATTGAGCATCTCGAGGCCAGCCTGAGGAGGCAAACCGGGGAAG
ATC------TGCCATCCGGCGTC------GCCGAGCTCCACGATATGCAGCAGCAGGTCTGGTCGGCACTGGGAAAAGTT
CGTCAAAGAAAGGTA----GGATTGGGTCGCAGTA----CATTTTGCACATC----CAACTGCGTTGATAATTTTCACTG
CTCGCATGCAAAGCAAAAAAGTTCATGCCTCTCTTCCTCCTTGTGTTGACTGTTGATCCATGGATGCAGGATGAGCTACT
GAAGCAGCAGGGTGAGCTTCTGAACCAGCAGCTGGGCGAATCACATCGCAAGGTACGTGTGTGC----------------
-----------------------------------------------------CTCAGATTCCAAATAATTAATTAGCAA
ATGTCCATCCGACCCAATGATGCTGCTATATGCTAGTATAATCTATATATCATACATGAACGCAGTCAGGCAGGATCGTG
CTGCCGCAGAGGGGATGACGACAAAACAGATGCTAATGGCCTCGGCGGCGTTCCTGGAGCCCGAGGCGTCGACGTCAAAG
CAGCCGCCGCCGTTGCCGTAGCTCCCCGAGACGTGAGCTGCTTCGCCCTGGAGGATGTATCATGCCATACAAGCTCTACG
ATGCGAATAAACACGCTCACTGCTAGTAGCTACTTCATACATCCGTATCTAGACAAATCTAAGACAAAAATTTTGGGACG
GAGGGTACATCCGTATCTAGACAAATCTAAGATAAGAATTTTGAGAAGGAGGGAGTACTAGCTAGTACTATTGCTCAACC
ATTGTTAGACTATGT
>chr1D_1
CGGCCATTACAAAAGTGGTGTGGTGCTGATCGTGCCGGGCTGGCCATGTATAAATAGCTGGTGCCACCAGGCCAAGCGAC
GTGATGTTTCAATGCAAGCGCCAGAGTGGGTTTCTCGGCCGTCGTGCCTGTTTAATGCCGGTAGGCGGACGGACGAGCAA
CCACAGTAGAGAGTCGTCATGTCCCGTCCAGTCAAGTCTCCCCAGGATTGAACACGCGAGGAGACCAGGACTGTACCGGT
TCAACTTCGGCTCCAGTGAACATCGCGTCCGCTCAGGGCCAGCATGAATGCGATTTGGGAGCCGGAGGTGCATTCATGCG
GGAGAGGGCGCGGGAGGGGTTCTTTGGTGGGATCGGGGTGTAGGGCACGTATGTGGCGATGGCCGGACACCGGCAAA-CT
CCTCTAATTTACGTCCGGTTTATGGGATTTCGAGCAAACGAAAGCATTCGCGGACCAATGTGGTACCGCATTGCTTGAAG
CATCCGTACAGCTATGTCCTGATGTTTTGAGGGCCCGCGTTGAAGATGCTCTGCCCC----GTGTGTGTGGTGAGATGAC
AACTACATGGTGTGGCACCCCACAAATTAACTAGCCGCCCC---------------------------------------
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-------------------------------------------------TACTGGACATATTGACTGACTTGCATGCCGG
GAATAATGGACATGCCGTGTGAAAAGAACCTTGACGCTAGCTACAAATACAATGCCTTCTTCTTCTCTTTGTGGCCGCGG
GCGTACTGAGTGACCACTTCCGAGCTTCGTGCTGCTCCATCGACCTCTTCTCTTCTACCCAGCGAGCTGTCGCCGCTGGC
TCACCTTTTGCCCCTTCTCTCTCAACTGAATCGCATCGCTAGTCCCTCCCAA-------CTCTGAGT-GATTAAGATGGG
GAGGCGTGGGAAGCTGGAGGTCTAAGAGGATCGACGACGACGGTTCGCGGCAGGTGACCTTCTGCAAGCGGCGCGGCACG
CTGCTAAAGAAGGCGTGTGAGCTCGCCGTGCTCTGCGACGACGACGTCAGCCTCGGCCTCGTCGTCTTCTCCAGCACCAG
CAAGCTCGCCGGCGACTACTGCAGTCCTAATACAAGGTA----GCTAGCTGAGTCTATCCCGCCCGTTCCTTAG-AGCAT
CTCCAGCCGCGCCCCCAACAAGGCCTCCCAGACGATTTTTCGGCCGCTGGCGTCAAAAAATCGGCACAGTCACGTCCCCA
GGGGCCCTTTTTTCACCGGCTCGGGCCGAAATTGCCGCCGGCGGACCCAACCCGAACCCGGTGCGCTGGGGGGCGCTCGG
GGGCGCCGGGCGAATCGTTTTTGGCGCGAAAGCGCCGCGGGCCAGCCGCGTCAGCGACACCGTCCGCCTCGTCTTCTCCC
GACGCCTCGGTTTTCCGCGGGGAATCAATGGCAAGGCTGTTGATTCCTCACGGACGGCGCGTTCATGGGGCGGCGCGCCG
ACGCCTCTCCTCCCTCGGACGCGTACACACGGACGCGGCGCGACTATATATGGCCTCGCTCGCTTGTGATGAGTGCCACC
TCTCCACCTCTCCCGAGCGCCGCCGCCGAGCTCTTCTCCCCCAGCCCTCCCTCTCCCGAGAGCCGCCGCCGATCTCTTCT
CCCCCAGCCACTCCATCTCCCGAGCGCTGCCGCCGATCTCTTCTCCCCAGCCACTCCATCTCCCCGATGGCCGAGCGTTT
CCCTGGAGACGAGGCGGCGGCCAACGGCTTCGGCCGCCGTTCGCTCCGCGAACAGGAGTCCTGGCTCCTGTTCCAGGCGA
ACTTCCCAGTGCCGCCAGACATGCGCGCCGGGCCGACGGGCTGGAGGCTCAGCAATGGGCGAGTGCCCATTCCCCCGTTG
CCCGACGCCATGGCCAAACCATCCTACTTCGCCGACGAGGTCGAGATCGTGCACGCCTCCCTCACCGACGGCGAGCTCTC
CCTCCCCCCAGTACGCCGCCGACAACCACGCGGCTTGGGCGGCGTACTTCGAGCGCTGCCAGCAGCAGCGGCTGGCGTCC
ACCAACGGGGCGCCGGTGGTCGGCGGCGTGAAGAACAGCGAGGGGCGCCACCTGTGGTGGGCGCCCCTGGCCGCACACTT
CAGGGCGGACGCACCTCGAGGGCGGCAACAACCCGCCGTTGGCGTACCCCCCGGCGAGGGCGGCCGCCCCGGCGCCCCGC
CGACGCGACGGGCAATGGGCGCGAAGGAGGTTCGGCGCGTCCTCCTCCTCTTCCTCCTCCCGCTCCTCCTCCCACTCCTC
CGGCACTCCAACGCTGCTCGGCGTCAAGGCCGAGCCCGACATCGTCATCAACGAGGGCGGTCGGCGCGCCTCCTCGTCGG
CTCCTCCTCCGCGCTTCGTCAAGCCAAAGATGGAGCCGGGGCTGGCGCCGGTGAAGACAGAGCACGGCGAGGTCGAGCTC
GACGACGACGCGGCCCTTGAATGGGCACGCCAGGACTCCATCAAGATGGCGACGGAGCGCCAGCGCGCCGCCCTGCGGCG
CTTCGAGCAGCGCCGCCGAGGCCGCGACGAAGGAGGAGTCGTCATCATCGACGACAACGACGACGACGACGACGACGCGC
CGCCACCAGCCGGGGAGGGGTCCAGCAGGGGCGCCCGAGTGAAGGAGGAGAAGGCCGACGATGGCGGCGACGACGGCGAC
TTCTCGGCCTTCAGCAAGTTTTTTTATTAGTTTTTATATGTAATGGCGACTACTCGACTTAAATCCGCGAATATAAGCCC
AAGTTTGCCGAAATTTGACGTGTTTTAGCCGAACTTCGCGTAAATTTACTACACAATTTTTTTTCCCCACGCCTGGGGCC
GGCCCTGGGGCCAACTCGCCCTCAGGCCCATTTTTTCGCCGGGTCACCCCCAGGCGGCGATTTTAGACGCCCCGTGGGGG
GCCAACGGCTGGAGATGCTCTTACATGCATGCATATCCATCCATCGACTACACTGCTAGCTGGAGTAG-GTACGTTCTTG
TGACATATATACTTCCCTTGTCATTTGCTAAGCTGGAGTGAGCTCATTCAGCGCTACGAGCGCGAGCGCGAGAGCACCAG
CAGCACCCAAC---------TCCATGTCCAGGGGAGAATTACAAACCAGAATGA-----TGATGATCATCATCAGGTACG
TACGTACGGTTAAAAGAGACAGGATGTTCTACTCCCGGGTGCACCTACACCCGCATGGACAGGCAAACACGCATACTACT
ACGTACG-TACATACAACGAACAGTTTGTACACTTAACATTGAATGAATCTTTGTTCGTTCGCGTGTCCGTGCAGCAACA
GCAAGTGTTGGTCGGGGTGGCAAGGTTGAGGCAGGAGATTGGCCATCTCGAGGCCAGCCTGAGGAGGCAGACCGGGGAAG
ATC------TGCCATCCGGCGTC------GCCGAGCTCCACGATCTTGAGCAGGAGATCGAGTCGGCACTGGGAAAAGTC
CGTCAAAGAAAGGTA----CGATCGGATCGGAGTA----CACTTTACACATTAATTCAGCTGCGTTGATAAATCTCACTG
GTCACATCACATGCAAGG--GTTCACGCTTCTGTTCCTCCTTGTGTTG-----------ATGGATGCAGGACGAGCTACT
GAA---------------------CCAACAGTTGGGCGAATTACATCGCAAGGTACGTGCCTCTACGTGATTTAGTTGCA
GTTATTATAATTTTTTTGACGCTGTGCAGTTATTATAATTAAGTGGACACCAACTCAAATTTCAAATAATTAATTAGCAA
ATGTTCATCCGACCCAATGATGCTGCTATATGCTA---TAATCTATATATCATACATG----------------------
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>chr1D_978
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---------------------------------------------------AGTCCCAACTCCCAAGAGATTAAGATGGG
GAGGCGTGGGAAGCTGGAGGTG-AAGAGGATCGTCGACGACGCTTCGCGGCGGGTGACCTTCTGCAAGCGGCGCGGCACC
CTGCTGAAGAAGGCGCGTGAGCTAGCCGTGCTCTGCGACGACGACGTCAGCCTTGGCCTCGTCGTCTTTTCCAGTACCGG
CAAGCTCGCCGGCGACTACTGCAGTCCGAATACAAGGTA----GCTAGGCTGATCTGTCCCGTCCGTTTCTTACGTGCA-
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-----------------------------TGCGTATCCATAGATT------ACTGCTAGCTACAGTATAGTACGTTGCTG
TGACATGGTACTC-CCCTTGTCATTTGGTAAGCTGGAGTGATCTCATTCAGCGCTA------CGAGCGCGAGAGCACTCC
CAGCACCCAGC---------TCCAGGTCCAGGACACAAACCAA---------GA-----TGGTGATCATCATCAGGTACG
TACGGTTCGTTAACAAGCAAGCAAACACGT--------------------------------------ACGCATACTACC
TACAGTAGTACATAGAACGAACAGTTTGTGCACTTAATAATGAATGAATCTTTGG-------TGCGTGCGTG------CA
GCAACTGTTGGCGGAGGTGGCAAGGTTGAGGCAAGAGATCGACCATCTCGAGGGCAGCCTGAGGAGGCAGACCGGAGAAG
AAGACCTGTTGTCATCCGGCGTTACCGCGGCGGAGCTCCACGATCTGCAGCACCACGTCGGGTCGGCACTGGGAAAAGTC
CGTCATAGAAAGGTAAGCAGGATAGGATCGGAGTACGTACATTTTACGCATC----AAGCTACGTTGATAAATCTCCCTG
CTCACATCACATGCAAA---------------------------------------------------------------
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>SNPs
--------------------S-------------------------------------------SS--------------
-------------------------S-------------------S------------S--S----------S------S
----S----------S-------------S-------S-----S----------S---SS-----------S--------
----S--------S-------S-------S----SS----S------------------------------S--------
-----S----------------------------SS--------S-------------S------------S-----S--
------------------------S--------------------S-SS----S-S------------------------
------S--S-----------------------S---------------------S-SSSS---S---------------
-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
---------S--------------------------------------------------S------S------------
--------------------------------------S-----------------------------------------
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---------------------------------------------------S----------------------------
-----------------S-----------------------S--S-SS--------------------------------
---S--------S-----------S--------------SSSS----------------------SS------S------
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---------------------------------SSSS-------------------------------------------
---------------------------S----------------------------------------------------
-----------SSSSSSSSS-----SSS-SS---SS--S-S----------S--SSSSS-------S----------S-S
--S-S-S-S---SS------------------------------------------------------------------
-----------S-----S--S-SS------------S-------SSSSSS-----------S------------------
----------S------S---S-S-----S---S--------S--------------------------S----------
--------------------------------------------S--------------S-------------------S
-----------------------S--S---S--------------S------------S------------S-S------
---S---SSS-S-----SSS-----S--S---S---------------SSSSSSSSSSS------------S--------
---SSSSSSSSSSSSSSSSSSSSS---S---S---------S-----------------SS-SS----------------
---------------------------------------------------------S---S------------------
----S------------------------------SSS--------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_768
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----------------------------CCAGTTGACATCCCTAGCCC--------------------------------
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>reverse_3765
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----CAGCAGGGTGAGCTTCTGAA--------------------------------------------------------
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