>input_sequence_84552
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--------ATGGCGGCGTCCGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCGCTAACACTGGCGCTGCGCTCG
GCGTCGGCGGACGCGCAGGCGGACGAGGCCCAGAAGCCCAAGTGCGCTCCGGGCGCCGCCACGCCGTGCCGCGTGGGTGC
GTTGCGTGATCCGGAGAACCAGGAGGAGGAGGGCCTGCTCAACGTGAAGGTGCCGAGCAGCGCGGCCGACGATGACTACA
GCGATCCCGACCAGCCCAAGGACCCCGACCAGTCCGACGGAGATGACCTCGTTATCCTCGGCCACTGA------------
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>chr6A_1_TraesCS6A01G342100
TACCACAACCGCATGATTACGTGATTGAAATTCGAAGTATGAGTGAAAGGGTGAAGGGGTCATGAGTTGGA-GTGCCATT
GGCGACAATGTCCGGCTTGGATTGAAGAGGCAACGATAACGAGGTGGAACAAGAGGAGTGGTTGAACGGTAAAAATGTCA
GTAATGTTGTTTGGTGTATATGAGGATCACAAAGATATAGAAATGCTAAAAATCTAACGTCGGATTTTTAAGTATGGCAA
ATCAAACTT-TTTTTATGGC--ATTACATGTCGCGAGCAA-----TTTCCTTCAGCAAGCATGGCAAATTCTGGCAAAAA
AA---CTTAACTTGTGAAGATGCTAAAGGGAATATTGTC---------------------ATAAAAACATTTGATTAGCC
ATGTGTTAAAAATCTGACATCAAATTTGTAACGCGGTTCTAAAGATATATGCTTGACATGATTGTTGTTACACCAATTGA
ATAACCATA-CCCATTGCAACGCACGCGCAATTACC-----TGAGACAAAAATAGATGCTGGATTGTAGCGG----TTAG
AAACTTGGAAGCTAATTACTAAGGAGATTCAAAGCTTGCATTTGAGAGTAGGGAGGTGGGGTGGGGGAGCCATGATTGGA
TATCAATGCATGCAATGGA-GGGGAGGCCATGATCCGAGGAC---TCGTTTATTTTTCCTTGAGAAGAACATGGGTGACC
ACCAGAAGAAATGGAAAGGAAGGGACTCGTGTTTTGCGGACCAGCGGTGTCTGCTCAAAACTAGGCCCCGGCTACCTCGA
GCTCCACCACGCAATCCGCAAAACACGCTGAGCTGCAAGCAAATCCACATCGATTTAAGCTTCCTCTTAATCGATCGCAC
GCATGGCTACAGTTCTCGCGTCT-CCTTAAAAAATAGTACAATATACTTTCTCCGTTTCAAAATAGATGACTCAACTTTA
TACTAACTATATACTAAAGCTAGTATAAAGTTGAGTCATGTTTTTTTAGAACGGAGTGAGTAATTCTCATCGTCGTCTAG
GCGTACCCATGGCGGCGTCCGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCGCTAACACTGGCGCTGCGCTCG
GCGTCGGCGGACGCGCAGGCGGACGAGGCCCAGAAGCCCAAGTGCGCTCCGGGCGCCGCCACGCCGTGCCGCGTGGGTGC
GTTGCGTGATCCGGAGAACCAGGAGGAGGAGGGCCTGCTCAACGTGAAGGTGCCGAGCAGCGCGGCCGACGATGACTACA
GCGATCCCGACCAGCCCAAGGACCCCGACCAGTCCGACGGAGATGACCTCGTTATCCTCGGCCACTGATACGATCGATCG
ATTG---CGACACGATCGATCACGTGCGCCTGACGCGTAGCGTTACATTTCTTG--------------------------
----------TTTATTTGTAGCTCATTTTTTGGTGTGTTAAGTAGATAGTGTGCTTGGACCGCGAACGTGTGTTTC----
TAAAGATTA-----------------------------------------------------------------------
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------------------------------TAAAAGGATTTGGGCATTTGGTAAAGTCTGATCCTTATA---------CT
CGATTAATCTGCGGTACGCCATTCCTAGTCTCAAGTTTTTGGTTTGATATATGGCAATAAGAT-----------------
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--TGGTTGAATGAGAAGTCAAAGATACAAAACTTGTCTCAACAAAGTAAATTATGCAACGCATATGTTTTCTCTCTAAAA
CTCTAAAGTATGATGCAGCGCCAGT------GTTAGTGCGCAC-GATATAAGTAAATGTATATTTCATAGTGACC----T
TGTATAAGTAAATGGAGGGTTTCTCGCCAGTTTGGATTAAGTAGATTATGATTTGTGTTACTTCTGTAAAACACTTGGTG
TGGCTGAATGGTCATCTTTTGCTGACTTTTACTCCTTCCG-CGGTCTCACACAAGGCTATCTTTTGTCTCCGTGTTTATT
TCCTTTAGTGGCTGATGTGCTTTTGCTGTTGTTAAATGATGTCTCTAGTAGAGGTGGCACCCAAGATTTTTGTTTGTGCA
CACGGGCAGCTAATAGCTCGGATTTGCTATTTGCAAATGATAGTGTGTTGTTCTTTAAGGAAAAATTTGAGCAAATTTTG
ACCATTCAAATGATTTTGGCCCTCTATGAAGAAGGGACGGGTCAATTGTCGAGTCCATCTAAGTGTTCCATTTTGTTTGG
AAAAACTG--TAATTTGGAAACC-CAAGCTTCTATCATGGTCATTTTCTGCTGATGGTTTTGACGATAAGTACCTTGGGT
TACCGGTTCCACAAGAAAGAATGAAGGTGGCTAAGATTCACTCTCTGCGAAAGATAAATTT-ATAAGAGGCTTTCGGACT
GGATTGAGAAATTTGCTTCTAGTGGTACAAAAAAGA-TATAATTAATTCAGTCATTC
>chr6D_1
TACCACAACCGCATGATTAAGTTTTTGAAATTCGAAGTATGAGTGAAATGGTGAAGGGACTGTGAGCCGGATGTGCCATT
GGCGACAATGTCAGCCTAGGATTGAGGAGGCAA-GATAACGAGGTGGAAGAAGAGGAGTGGTTGAACGTAAAAAAGTCAA
TATTGCT-----------------GATCATAAAGATACGTAAATGCTAAAAATCTGACGTCAGATTTTAAGCATAGCAAT
TTGAATGTTGTTTTCATCGCAAATTACGTGTCACGGGCATAGTCAGAATTTGTTATGCT---------------------
--------------------TGCTGAAGGAAATTGCTAGGCTCGCGGCATGTAATTTGCAATAAAAACATTTGATTAGCC
ATGT-TTAAAAATCTGACATCAGATTTCTAGTGCGGTCCTGAAGATATATGTTTGACATGATCGTTGTTACACTAATTGG
ATAACTATATCCCGTTGCAACGCACGGGTAATTACCTAGCATGAGACAAAAATAGATGCTGGATTGCAGCGTGTGCTTAG
AAACTA-GAAGCTAATTGCTAAGGAGATTCAAAGGTTGGAGACTAGGAGGAGCC---------GGCGAGCCATGACTGAA
TATCAATGCATGCAATGGAGGGGGAGGCCATGATCCGAGGACCGCTCGTTTATTTTTCCTTGAGAAGAACATGGGTGACC
ACCAGAAGAAATGGAAAGGAAGGGACTCGTGTTTTGCGGACCAGCGGTGTCTGCTCAAAACTAGGCCCCGGCTACCTCGA
GCTCCACCACGCAATCCGCAGAACACGCAGAGCTGCAAGCAAATCCACATCGATTTAACCTTCCTCTTGATCGATCGCAC
GCACGGCTACAATTCTCGCGTCTTCCTCTAAAAGAAGCGCAATATAATTCTCA---------------------------
------------------------------------------------------------------TCATCGTCGTCGAG
GCGCACCCATGGCGGCGTCCGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCGCTAACACTGGCGCTGCGCT--
----CGGCGGACGCACAGGCGGACGAGTCCCAGAAGCCCAAGTGCGCTCCGGGCGCCGCCACGACGTGCCGCGTGGGCGC
GTTGCGCGACCCGGAGAACCAGGAGGAGGAGGGCCTGCTCAACGTGAAGGTGCCGAGCAGCGCGGCCGACGACGACTACA
GCGATCCCGACCAGCCCAAGGACCCCGACCAGTCCGACGGCGATGACCTCGTCGTCCTCGGCCACTGATACGATCAATCG
ATTG---CGACACGATCGATCACGTGCGCCTGGCGCGTAGCATTACATTTCTTG--------------------------
----------TTTATTTGTAGCTCGTTTTTTGGTGCGTTAAGTAGATAGTGTGCTTGGACCGCGAACGTGTGTTTTCC--
-AAAGATTG-----------------------------------------------------------------------
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------------------------------TAAAAGGATTTGGGCATTTGGTAAAGTCTGATCCTTA-----------CT
CGATTAATCTGCGGTACGCCATTCCTAGTCTCAAGTTTTTGGTTTG--ATTTGGCAATATGAT-----------------
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--TGGT------------CAAAGATACATGAATAGTCTCAACAAAGTAAATTATGCAATGTATATGTTTTCTCTCTCAAA
CTCTAAAGTAGGATGCAGCGTCAGC------ATTAGCGCACACTGATTTAAGTAAATGTATATTCCATAGTGACC----T
TGTATAAGTAAATGGAGGGTTTCTGGCCAGTTTGGATTAATTAGATTATGATTTGCATCACTTTCGTAAAATACTTTGTG
TGGTTGAATGGTCGTCTTTTGCAGACTTTTGCTCCT-CCG-TGGTCTCACACAAGGCTATCTTTTGTCTCCGTGTTTATT
TCCTTTAGTGGCTGATGTGCTTTTGCTGTTGTTAAATGATGTCTCTAGTAGAGGTGGCATCCAAGATTTTCGTTTGTGCA
CAC-----------AGGTCGGATTTGCTGTTTGCAAATGATAGTGTGTTGTTCTTTAAGGAAAAATTTGAACAAATTTTG
ATTATTCAAATGATTTTGGCCCTCTATGAAGAAGGGACAGGTCAATTTTCGAGTCCATCTAAGTGTTCCATTTTGTTTGG
AAGAACTG--TAGTTTGGAAACC-CAAGCTTCCATCATGGTCATTTCCTGCTGATGGTTTTGAGGATAAGTACCTTGGGT
TACCGGTTTCACAAGAAAGAATTAAGGCAGCTAAGATTCACTCTCTCCAAAAGATAAAATT-TTAAGAGGCTTTCGGACT
GGATTGAGAAATTTTCTTCTAGTGGTACAAAAGAAATTATAATTAATTCAGTCATTC
>chr6B_3
--CCACAACCACATGATTACGTGATTGAAATTCGAAGTATGAGTGAAAGGGTGAAGGGGTCGTGAGTTGGATGTGTCATT
GGCCACAATGTCCGGCTTGGATTGGAGAGGCAACGATAACGAGGTGGAAGAAGAGGAGTGGTTGAACGGTAAAAATGTCA
ATAATGTTGTTTGGTGTACATGAGGATCACAAAGATACAGAAATGCTAAAAATCTAACGTCAGATTTTTAAGTATGGCAA
ATCAAACTT-TTTTGATGGCAAATTACGTGTCGCGAGCATGGCAGTTTCCTTCAGCAAGCATGGCAAATTCTGGCAAAAA
AAAAACTTAACTTGTGAAGATGCTG---------------------------------------AAACATTTAATTAGCC
ATGTGTTAAAAATCGGACATCAGATTTGTAGCGCGGTCCTAATGATATATGTTTGACATGATTGTTGTTGCACTAATTGA
ATAACTATACCCCATTACAACGCACGCGCAATTAC------TGAGACAAAAATAGATGCTGGATTGCAGCGG----TTAG
AAACTTGGAAGCTAATTACTA-----------------------------------------------------------
---------------TGGA-GGGGAGGCCATGATCCCAGGACCGCTCGTTCATTCTTCCTTGAGAAAAACATGCGTGACC
ACCAGAAGAAATGGAAAGAAAGGGACTCGTGATTTGCGGACTACCGGTGTCTCCTCAAGACTAGGCCCCGGCTAGCTGAA
GCTCCACCATGCAATCCGCAGAACGCGCAGAGCTGCAAGCAAATCCACACCGATTTAACCTTCCTCTTGATCGATCGCAC
GCACGGCTACAGTTCTCGCGTCT-CCCCTAAAAGAAGTGCAATATAATTCTCA---------------------------
------------------------------------------------------------------TCGTCGTCGAA---
GCTCACCCATGGCGGCGTCCGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCCCTAATGCTGGCGCTGCGCA--
----CGGCGGATGCGCAGGCGGACGAGGCCCAGAAGCCCAAGTGCGCTCCGGGCGCCGCCATGCCGTGCCGTGTGGGCGC
GTTGCGCGACCCGGAGAACCAGGAGGAGGAGGGCCTGTTGAACGTGAAGGTGCCGAGCAGCGCGGCCGACGACGACTACA
GCGATCCCGACCAGCCCAAGGACCCCGACGAGTCCGAGGGCGATGACCTCGTCGTCCTCGGCCACTGATACGATCGACCG
TCCGGCCCGACACGATCGATCATGTGCGCGTGGCGCTTAGCATTACATTT-TTTATTTTTTTGAACACCGCTTAGCATTA
CATTTGTTATTTATTTTTTAGCCATCTTTTGGTGCGTC-AAGTAGATAGCGTGCGTCGACCGCGAATGTGTGTTTTCTAA
TAAGGTTTA-----------------------------------------------------------------------
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------------------------------TTAAGGGATTTGAACATTTGGTATGTGTGATCTTACACGATTGATGACCT
GGATTAATCTGCGGTACACCGTT--------------TTTGATTCA--ATATGCTAATAGGATCAATGATTAGGACTTAG
ATGTGCAATACTTATGGCACATCTAGATGTGCTTTAGCAATTGTTTAGGACACATCTAGATGTGCTTTAGCAATTGTCTA
GGACACATCTAGATGTGCCTTAGTTATTGCACATCTAAGTGACACAAGCAAGCATAGAAAGGAAAAGGAAAAAAAAATTC
ACACGAATTTTCACATAAGATTAATGATATAGGACTTAGATGTGCAATACTTATGCCACATCTAGCTGTGCTTTAGCAAA
ACTGAT------------CAAAGATACATAAATAGTCTCAAC--------------------------------------
----AAAGTAGGATGCAGCGCCAGC------ATTAGCGCACACTGATATAAGTAAATGTATATTTCATAGTGACCGACCT
TGTATAAGTAAATGGAGTGTTTCTGGCCAGTTTGGATTAATTAGATTATGATTTGTATCACTTCAGTAAAATACTTCGTG
TGGCTGAATGGTCGTCTTTTGCAGACTTT-ACTCCTCCCG-TGGTCTCACACAAGGCCAACTTTTGTCTCCGTGTTTATT
TCCTTTAGTGGCTGATGCACTTTTGTTGTTGTTAAATGCTGTCTCTAGTGGAGGTGGCATCCAAGATTTTCGTTTGTGCA
CACGGGCACCTAATAGCTCAGATTTGCTATTTGCAAATGAAAGTGTGTTGTTCTCTAAGGAAAATTGTGTGCAATTTTTG
TTTATTCAAATGATTTTGGACCTCTATGAAGAGTCCATCTAAG---TGTCGAGTCCATCTAAGTGTTCCATTTTGTTTGG
AAGAACTATATAGTTTGGAAACCACAAGCTTCCATCATGGTCATTTCCTGCTGATGGTTTTGAGGATAAGTACCTTGGAT
TACCGGTTCCACAAGGAAGAATGAAGGCGGCTAAGATTCACACTTTGCAAAAGATAAATTTCTTAAGAGGCTTTCAGACT
GCATTGAGAAATTTGCTTCTAGTAGTGCAAAAGAAATTATAATTAATTCAGGCATTC
>chr6B_974
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-------------------------------------------------------------AATTTTCATCGTCGTCGAG
GCGCACCCATGGCAGCGTCTGCGCGCACATGCCTGGTGGTGGCAGCGCTGGCGTGCGCGCTAACGCTCGCGCTGCGCTCG
A-------GGACGCGCAGGCAGACGAGGCCGAGAAGCCCAAGTGCGCTCCGGGCGCCGCCACGCCATGCCGCGTGGGCGC
GTTGCGCGACCCGGAGAACCAGGAGGAGG---GCCTGTTGAACTTGAAGGTGCCGATCAGCGCGGCCGACGACGACTACA
GCGATCCCGACCAGCCCAAGGACCCCGACGAGTCCGACGGCGATGACCTCGTCGTCCTCGGCCACTGATACGGTCGACCG
GCCGCTCCGGCATGATCGATCATGTGCGCGTGGCGCTTAGCATTCCATTT-TTT--------------------------
----------TTATTCTTTAGCTATTTTTTCGATGCGTTAAGTAGATAATATGCGTGGACCGCGAACCTGTGTTTTCC--
-GAAGACTATAATGTACAATGATTAGTCTTATCTTAAGTTTTTCATGTAACTGAGAGATGACAAAAAAAATGTTTACAAT
GGGTCATCTCCTAGCCTTATCTTCAATAACTAGCTATTCCTAAAAATATGATGAGACATATTGTGCTAAGAGATCATCTC
TTGTCTTGTCTTAAATAAGAGAAGACAAACCTTTACTTATGAGTTCTTTCTCCTTCACCTCATCATTTATTCTACATGGC
ACTCCTAAGATAGCATCATTGTACATGCCCTAAAGGGATTTGGACATTTGGTAATGTCTGATCCTTA-----------CT
CGATTAATCTGCAGTACGCCATTCCTAGTCTCAAGTTTTTGGTTTG--ATATGGCAATAAGAT-----------------
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--TGGTTGAATGAGAAGTCAAA----------------------AGTAAATTATGCAACACATATTG-TTTTCTCCAAAA
CTCTAAAGTAGGATGAAGCGCCAGCGCCAGCGTTAGCGCGCACTGATATAAGTAAATGTATATTTCATATTGGA----CT
TTAATAAGTAAATGGAGGGTTTCTCGCCGGCTTGGATTAATTAGATTATGATTTGTGTCACTTTGGTAAAGTACTTAGTG
TGGCTGAATGGTCGTCTTTTGCAGACTTTTACTCCT-CCGGTGGTCTCACACAAGGCTATCTTTTGTCTCCGTGTTTATT
TCCTTTAGTGGCTGATGCGCTTTTGTTGTTGTTAAATGATGTCTCTAGTAGAGGTGGAGCCCAAGATTTTCGTTTGTGCA
CACGGGCACCTAATAGCTCGGATTTGCTATTTGCAAATGAAAGTGTGTTGTTCTTTAAGGAAAATTTGGAGCAA------
ATTATTCAAATGATTTTGGCCCTCTACAAAGAAGGGACATGTCAATTGTCGAGTCCATCTAAGTGTTTCATTTTGTTTGG
AAGAACTG--TAGTTTGGAAACC-CAAGCTTCCGTCGTGGCCATTTTCTGCTGATGGTTTTGAGGGTAAGTACCTTGGGT
TACCGGTTCCACAAGAAAGAATGAAGGCGGCTAAGATTCACACTTTGCAAAAGATAAATTTCTTAAGAGGCTTTCGGACT
AGACTGAGAAATTTGCTTCTAGTGGTGCAAAATAAATTATAATTAATTCGGTCATTC
>SNPs
-------------------------------------------------------------S------------------
-------------------------------------------------S------------------------------
S-----------------S------------------S-----------------------S------------------
--------------S------------S-----------S----------------------------------------
------------------------S----S---SSSSSS-----------------------------------------
----------------------S-------S------S-------------S---------------------S------
-----S------------------------------------------------------------S-------------
----------------------------------S---S-SSSS--SSSSS-SSSSSSSSSSS--S---------S--S-
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--------------------S-------S-----------------------------S---------S-----------
---S-----------------------SS----SS---S-------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----------S--
---S----------------------------------------------------------------------------
SSSS-------------------------------------------------------------------------S--
------S--S--------------------------------------------------------------S-------
----------------------------------------S-----------SS--------------------------
--------------------------------S--------S--------------------------------------
------------------------S----------S---------------------------------------S----
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-------------------------------------------------------------------SS-----------
----------------------------------------------SS--------------------------------
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----------------------------S--S-S----------------------------------------------
----------S-------------S-----------S-------------------------------------------
----------------------------------------S-----------------S-----S------S----S---
-------------S--------S-------------S----S--------------------------------------
----------------------------------------------------------------------S---------
--------S-----------------------------------------------------------------------
-SS-----------------------------------S-----------------------------------------
--S---------S-------------------S------------------------------S----------------
---------------------------S--------------------S-------------S-----------------
--------------------------------S-S----------------------
>forward_621
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-----------------------------------------TTGAGAGTAGGGAGGTGGGG-------------------
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>reverse_2251
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----------TGATGCAGCGCCAGTGTTA---------------------------------------------------
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