>input_sequence_84542
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-----------------ATGAAAGTCAAATTTATTCCACTCTCATTTAAGAGCGTGAATACAAGGAGGTATTTTGTGTCT
GGGAATGTCCAAAGAAAAAATATTTTGAATCTT-CTTTTCCTTCTTTCCCTTAAAAAACG--ACTCAATAAAAATCCAAT
TATTGACTCTACAAGAAAGAATGAAATGCTTGTTATGCCTAATATACTTAGTTTAACATGTA------------------
------------------------------------------TATGCTATTTTCAATCGTGTCATGGATATTATATGTCT
GTTATACCTCTATTCTTTTTTCTATTAGCCATTGTTTGGCAAGCTGTTGTAAGTTTTTGA--------------------
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-------------------------------------------------------------------------------
>chr5A_1_TraesCS5A01G308100
TGCGAGACACTATTGTGTTTATGGCGACTACTACGAATCATCCTACTGATTTCCTAGCGAAATCAGTCGGGTCGCCACCC
GTCTGATCCAGTTTTCTCGGCCCTTAGATACGTCAAACACTCAACGCAGGCTGACCCTTTTCTCTCACGACGCTTCCAAC
CAGCCCCCTG--------CTCGAAGCACAGCAAGTCGCCGGCGAGCATCCATCCCATCAACGAAGAGCCGAGCTCCATAG
CAACACCAAAACGCCATGCCTAGCCACCAGCGAGCGCTCCGGCGGAGCTGCAATGGAGCCTACGGCGAGCGCTCCAATGC
AACACCAAAAAAGCTTCCCCCGAGAGCCGCAA----------------------GCGAAGCTCCATTGCAGCTCTAGCAA
AGCTCCAATGCAGCCCGGGCAGAGCTCCAATGCATCTGTG-GCGGAGCTCCAACAAACCTGGCGGCGCTCCATTGCAGCC
AGGGCGATGACGGCGCATGCTATGATGCAGCACGCTACAA------------------CGCAGCGCGCGA--ACGACGGT
GCAAGCTGCTTCACCGGAGCTGCAGTGGAGCATCGGTGCAACGACGTGAGGCGACGATGGTTCGCTGTAGTGGTGTAGAG
TGTGGCGTGTAGGACAGTAGGAGGCAAGCGTTGCAGCAACGCAAGCGGTGGTGGCACCGGTCTACGGCGACGGGCGATGG
CGCTGCCATGGCTGCGCAGCAAGAAGAAAAGGGAGGAGAAGAATGAGCGGGTGAACACCTTCTGCGGGAAAGAGATAATC
GAGCGGAAGGATAAGGTAGGGAGAGGGATAAGTGTCTCATGGGGCCCACCGGACGCGTGA-----CGTGCGTCGGAGCTG
ACTAATAAAGAGCGTTGATTTTAAACAATTTCCTATGTTTATTTGTTATTATTCGTCAATACCATTTCAATTACATAAAA
A-GGAGGGATATTCTCTTGCTAGTATTCTGCACATGCGGATAATATAGAATATAAAAAATGCATTGATCATTACATGTAA
TTCTATTAGGATATTATATGAAAGTCAAATTTATTCCACTCTCATTTAAGAGCGTGAATACAAGGAGGTATTTTGTGTCT
GGGAATGTCCAAAGAAAAAATATTTTGAATCTT-CTTTTCCTTCTTTCCCTTAAAAAACG--ACTCAATAAAAATCCAAT
TATTGACTCTACAAGAAAGAATGAAATGCTTGTTATGCCTAATATACTTAGTTTAACATGTA------------------
------------------------------------------TATGCTATTTTCAATCGTGTCATGGATATTATATGTCT
GTTATACCTCTATTCTTTTTTCTATTAGCCATTGTTTGGCAAGCTGTTGTAAGTTTTTGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCCAAAATAATAATT-AAAAATGGGTAAAAGCCAAGAAGTTTCATATTTTT-TAT
TATGAACCTTCTATTCTAAAAT----------------------------------------------------------
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--------------------------------------------TTAAATTCTTCTACATTGAAT-GGTAGCTACAACAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAGCAGGTAC--------------------AGGTACCTAC
ACAATACCTAACCACCTAACCCTATTTTTACTATTGATAAGAGTGCTTATTATAAATGAATTTCTGCAAAAAAA-TCAAG
AATTCATTTTTTGCATTTTTAGGTAT----AAAAAACCATCCTAGTGGATCCATGTGGTAAGGAAAAACTGGTATTCTAT
TCCTT-AAAAAAA---TTGGAGATTATGTAATGCTTACTCTCAAACTTTTTTGTTTATATGGTAGTGATATTATTTGTTT
CACTCTTTATCTTTGGATTCATATCTAATGACCCACGACGTAATCCTGGACGCGAGAAGTAAAAATTCAA-TTTTTTTTC
TTATAAATTGGATTTGTTTCATACATTTATCTATGAGAAAATCCAGGGGTCAGAATTCTTTCCAATTCGAATGTCCCAAA
TGATCCAAGGGAGCAGAAAGAGAGGGATTGGAATCCTTGGTAC-AAAACAATTGTACAACGGATTAGCAATCCGCCGCTT
TAGTCCACTCAGCCATCTCTCCGTGTTTCAAAGCGAAAGATTCCCGTGATATGATATAGGCAATAAATAAGAAATAATGG
TTGC--AAAACGCCCCCCTATT-TTTTCTTTCAGAAGTCTATTAAAATTATATTGCCAATTCCATTTTAGTTATATTCTT
TGTTCTTATTTCTTGCCTATATGATATCACCAAACTTAAAGCAATTAACATAGCACCAAACTTAAAGAAGTGCCCACAAG
TTCTTTAATTTTAACTACACTAGCCACCTGACTTGCACCTCTAGGCAGAGACTTGAGTTGCCTGCTTGTTCACGGTTGG
>chr7D_23
----------------------GGCGACTACTACGAATCATCCGACTGATTTCCTAGCGAAATCAGTCGGATCACCACCC
ATCTGATCCAGTTTTCTCGGCCCTTAGATACGTCAAACACTCAACGCACGCTGACCCTTTTCTCTCCCGTCGCACCCAAC
CAGCCCCTTG--------GTCGAAGCACGGCAAGTCGCCGGCGAGTATCCATCCCATTAACGGAGAGCCGAGCTCCATAG
CAACACCAAAACGCCATGCCTAGCCACCGGCGAGCGCTCCGGCGGAGCTGCAAGGGAGCCGACGGCGAGCGTTCCAATGC
AACAACAAAAAAGCTTCCCCCGAGAGCCGCCGGCAACGCTGCATCGAGCCTCCGGCAAAGCTCCATTGCAGCTCCAGCAA
AGCTC-----CAGCCCGGGCAGAGCTCCAATGCAGCCGCGCGCGGAGCTCCAACGAACCCGGCGGCGCTCCATTGCAGCC
AGG--------------------------GCGCACTTCAT------------------TGCAGCGCCA-GCGATGACGGT
GCAAGCTGCTTCACCGGAGCTGCAGTGGAGCAGCGGTGCAACGACGCGAGGCGACGGTGGTTTTTTGCAGTGGTGTAGAG
CGTGGCATGTAGGACAGTAGGAGGCAAGCGTTGCAGCAACGCAAGCGGTGGCGGCACCAGTCTACGGCGACGGGCGATGG
CGCTGCCATGGCTGCGCAGCAAGAAGAAAAGGGAGGAGAAGAATGAGCGGCTGAATACCTTCTGCAGGAAAGAGATAAGC
GAGCGGAAGGATAATGCAGGGAGAGAGATATC-GTCTCATGGGGCCCACCGGACGCGTGGCGGGGCGCGCGTCGGAGCCG
ACTTATAAAGAGCGTTGAT-------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3A_23
----------------------GGCGACTACTACAAATCATCCGACTTATTTCCTAGCTAAATCAGTCGGGTCGCCAGCC
GTGTGATCCATTCTTTCCAA-CCCTTGATACATCAACGCACGCCGAATCGCTGACCCTTCTCTCTCGTGTCGCGTTCAAC
CAGCCCCCGTGCTTCGATCTCACAGCACCGCATGTCGCCGTAGCACCGGAGAGCCGCCAT----GACCAGAGCTCCATAG
CAACACCAAAACGCTACGTCTAGCGGCTGGCGAGCGCTCCGGCGGAGCTGCAATGGAGCCGACGGCGAGCGCTCCAATGC
AACACCAAAA--GCTTCCCTCGGGAGCCACCAGCGACGTTGCATCGAGCCACTGCGGC----------------------
-GCTGCACTGAGCCGTCGGCGAAGCTCCAATGCAGCCGCG-GCGGAGCTCCAACGACCCCGGCCGCGCTTCATTGCAGCG
CCGGCGATGACAGCGGATGCTGCGATGCAGCACGCGGCGGCCATGGTGGAAGTTGCGATGCAGCGCACGGCGACGACGGC
GCAGGCTGCTTCGCCGGAGCTGCAGTGGAGCAGCGGTGCAGCGACGTGAGGCGACGGCGGTTTGCAGCAGCGGCGAAGAG
CATGGCGTGTAGGAGCAG--------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr2B_858
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---------------------------------TATGTTTATTTG---TTATTCGTCAATACCATTTCAATTACATAAAA
AAGGAGGGATATTCTCTTGCTAGTATTCTACACATGTGGATAATATAGAATCAAAAAAATGCATTGATCATTACATGGAA
TTCTATTAAGATATTATATGAAAGTCGAATTTATTCCACTCTCATTTGAGAGTGCGAATACAAGGAGGTATTTTGTGTTT
GGGAAAGTCCGAAGAAAAAAGATTTTGAATCTGCCTTTTCCTTCTTTCCCTTAAAAAAA-TAACTCAAGAAAAATCCAAT
TATTTACTCTACAAGAA----TGAAATGCTTGTTATGCCTAATATACTTAGTTTAACCTGTATTTGTTTTAATTCTGTTC
TTTATCCTACTAGTTTTTT-CTTTGCCAAATTACCCGAAGCTTATGCTATTTTCAATCCAATCGTGGATATTATGC--CT
GTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGTTGTTGTAAGTTTTCGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCCAAAAAA--AATT--AAAATGGGTAAAAGCCGAGAAGTTTTATATTTTTATAT
TATGAACCTTCGATTCTCAAAT----------------------------------------------------------
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--------------------------------------------TTAAATTCTTCTACATTGAATGGGTAGCTACAGCAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAG------C--------------------AGGTACCTAC
ACAATACCTAACCACCTAACCCTATTTTTGCTATTGATAAGAGTGCTTATTATAAATGAATTCTTGCAAATTTTTTCAAG
AATTCATTTTTGCA--TTTTAGGTATCAAAAAAAAACCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTT-AAAAAAA--CTTGGAGATTATGTAATGCTTACTCTCAAACTTCTT-GTTTATACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTCCG-TTTTT-TTC
TT----ATTGGATTTGTTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTAC-AAAA-AATTGTACAACGGATTAGCAATCCGCCGTTT
TAGTCCACTCAGCCATCTCTCCACGTTCCAAAGCGAAAGGTTTCCGTGATATGATATAGGCAAGAAATAAGAAATAATGG
TTGC--AAAAAA--CCCCTTTT-TTTTCTTTCAAAAGTCTATAAAAATTATATTGCCAATTCCATTTTAGTTATATTCTT
TTTTCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr6D_858
--------------------------------------------------------------------------------
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---------------------------------TATGTTTATTTG---TTATTCGTCAATACCATTTCAATTACATAAAA
AAGGAGGGATATTCTCTTGCTAGTATTCTACACATGCGGATAATATAGAATCAAAAAAATGCATTGATCATTACATGGAA
TTCTATTAAGATATTATATGAAAGTCGAATTTATTCCACTCTCATTTGAGAGTGCGAATACAAGGAGGTATTTTGTGTTT
GGGAAAGTCCGAAGAAAAAAGATTTTGAATCTGCCTTTTCCTTCTTTCCCTTAAAAAAA-TAACTCAAGAAAAATCCAAT
TATTTACTCTACAAGAA----TGAAATGCTTGTTATGCCTAATATACTTAGTTTAACCTGTATCTGTTTTAATTCTGTTC
TTTATCCTACTAGTTTTTTTCTTTGCCAAATTACCCGAAGCTTATGCTATTTTCAATCCAATCGTGGATATTATGC--AT
GTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTCTAAGTTTTCGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCCAAAAAA--AATT-AAAAATGGGTAAAAGCCGAGAAGTTTTATATTTTTATAT
TATGAACCTTTGATTCTAAAAT----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------TTAAATTCTTCTACATTGAATGGGTAGCTACAGCAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAG------C----------AGGTACCTAAAGGTACCTAC
ACAATACCTAACCACCTAACCCTATTTTTGCTATTGATAAGAGTGCTTATTATAAAAGAATTCTTGCAATTTTTT-CAAG
AATTCTT-TTTTGCATTTTTAGGTAT--AAAAAAAACCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTT-AAAAAAAATCTTGGAGATTATGTAATGCTTACTCTCAAACTTTTT-GTTTATACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTCAG-TTTTTTTTC
TT----ATTGGATTTGTTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAA-AATTGTACAACGGATTAGCAATCCGCCGCTT
TAGTCCACTCAGCCATCTCTCCACGTTCCAAAGCGAAAGGTTTCCGTGATATGATATAGGCAAGAAATAAGAAATAACGG
TTGC--AAAAAA--CCCCC-TTT-----TTTCAAAAGTCTATAAAAATTATATTGCCAATTCCATTTTAATTATATTATT
TTTTCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr1D_858
--------------------------------------------------------------------------------
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---------------------------------TATGTTTATTTG---TTATTCGTCAATACCATTTCAATTACATAAAA
AAGGAGGGATATTCTCTTGCTAGTATTCTACACATGCGGATAATATAGAATCAAAAAAATGCATTGATCATTACATGGAA
TTCTATTAAGATATTATATGAAAGTCGAATTTATTCCACTCTCATTTTAGAGTGCGAATACAAGGAGGTATTTTGTGTTT
GGGAAAGTCCGAAGAAAAAAGATTTTGAATCCGCCTTTTCCTTCTTTCCCTTA-AAAAA-TAACTCAAGAAAAATCCAAT
TATTTACTCTACAAGAA----TGAAATGCTTGTTATGCCTAATATACTTAGTTTAACCTGTATCTGTTTTAATTCTGTTC
TTTATCCTACTAGTTTTTT-CTTTGCCAAATTACCCGAAGCTTATGCTATTTTCAATCCAATCGTGGATATTATGC--CT
GTTATAGCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAAATCTTTAGTACTCTCT
ATGCCAAATTGAATGATGTGTTCATTCCAAAAAA--AATTTAAAAATGGGTAAAAGCCGAGAAGTTTTATATTTTTATAT
TATGAACCTTCGATTCTAAAAT----------------------------------------------------------
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--------------------------------------------TTAAATTCTTCTACATTGAATGGGTAGCTACAGTAA
TAAATTTGGATCAGCCTTTCTACTCCCCAGCACCTAGGTTGAGCAGGTAC----------------CTAAAGGTACCTAC
ACAATACCTAACCACCTAACCCTATTTTTGCTATTGATAAGAGTGCTTATTATAAAAGAATTCTTGCAATTTTTTTCAAG
AATTATTTTTTGCA--TTTTTAGGTAT--AAAAAAACCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTT-AAAAAAA-TCTTGGAGATTATGTAATGCTTACTCTCAAACTTTTT-GTTTATACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTCAG-ATTTTTTTC
TT----ATTGGATTTGTTTTGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTCCAAAAA-AATTGTACAACGGATTAGCAATCCGCCGCTT
TAGTCCACTCAGCCATGTCTCCATGTTCCAAAGCGAAAGGTTTCCGTGAAATGATATAGGCAAGAAATAAGAAATAACGG
TTGC--AAAAAA--CCCCC-TT-TTTTCTTTCAAAAGTCTATAAAAACTATATTGCCAATTCCATTTTAATTATATTCTT
TTTTCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr1A_858
--------------------------------------------------------------------------------
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---------------------------------TATGTTTATTTG---TTATTCGTCAATACCATTTCAATTACATAAAA
AAGGAGGGATATTCTCTTGCTAGTACTCTACACATGCGGATAATATAGAATCAAAAAAATGCATTGATCATTACATGGAA
TTCTATTAAGATATTATATGAAAGTCGAATTTATTCCACTCTCATTTGAGAGTGCGAATACAAGGAGGTATTTTGTGTTT
GGGAAAGTCCGAAGAAAAAAGATTTTGAATCTGCCTTTTCCTTCTTTCCCTTA-AAAAAATAACTCAAGAAAAATCCAAT
TATTTACTCTACAAGAA----TGAAATGCTTGTTATGCCTAATATACTTAGTTTAACCTGTATCTGTTTTAATTCTGTTC
TTTATCCTACTAGTTTTTT-CTTTGCCAAATTACCCGAAGCTTATGCTATTTTCAATCCAATCGTGGATATTATGC--CT
GTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCC-AAAAA--AATTTTAAAATGGGTAAAAGCCGAGAAGTTTTATATTTTTATAT
TATGAACCTTCGATTCTCAAATTTAAATTCTTCTACATTGAATGGGTAGCTACAGCAATAAATTTGGCAAAGAAAAAACT
AGTAGGATAAAGAACAGAATTAAAACAGATACAGGTTAAACTAAGTATATTAGGCATAACAAGCATTTCATTCTTGTAGA
GTAAATAATTGGATTTTTCTTGAGTTATTTTTTTAAGGGAAAGAAGGAAAAGGCAGATTCAAAATCTTTTTTCTTCGGAC
TTTCCCAAACACAAAATACCTCCTTGTATTCGCACTCTCAAATGAGAGTGGAATAAATTCGACTTTCATATAATATCTTA
ATAGAATTCCATGTAATGATCAATGCATTTTTTTGATTCTATATTATCCGCATGTGTAGAATACTAGCAAGAGAATATCC
CTCCTTTTTTATGTAATTGAAATGGTATTGACGAATAACAAATAAACATACTAGTGTTTATTAGTGTCGCATAAAACCCG
AAATGGGGCGTGGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGTTACTCGGAGGTTCGAATCCTTCCGTCCCAGATTGT
TTCTGATGAAACAAACGGTGAAATCATATAGTATTCCGTACGAGACAAAAGTTTATTAAAGAGAATAATGATATCTTATT
CTTTCTCAGAAAACATAATAAAGTCTTAAGTCCAGTCAAATTGACTATATTTATTTTCATGAAAAAATGGGATCTATCAA
GCACATTCAGGATATGCCTCTACTATAAAATCACTTAGTCATATTTTTTTCTTCCTTTTGGTATTCGAGTTGAAGAAGTA
CGAGAATTCTATAACTACCAAAAACTTTCAATCTTTTCATTGGAATAGTTTTTTTAGTTATTATAGTTAATTGTTTTTGG
TACTGAAAAAATATATTACTACTAGAATTAGAATTCTAGTAATTAAATTAATTAAACTTTTTTGGAGGTTGATAGTTTAT
TTATTGAGGAAGAGTCAATCCTTCTCTTCTCACTTCAAGATTGATCATCTCGAGCCATCCGTTGAGGGTGGAAATTTAAG
AATAAATAAGTTTTAAGCAAACTTGTTTAGTCGTCTTTTTCAAACTATGTTTCATTCATATGATAGAATTTTAATATGGG
TTTAAATAAATTGGATCTTGGCGGAGGCTTCCCGGATAAATAAACTATCAACCTCCAAAAAAGTTTAATTAATTTAATTA
CTAGAATTCTAATTCTAGTAGTAATATATTTTTTCAGTACCAAAAACAATTAACTATAATAACTAAAAAAACTATTCCAA
TGAAAAGATTGAAAGTTTTTGGTAGTTATAGAATTCTCGTACTTCTTCAACTCGAATACCAAAAGGAAGAAAAAAATATG
ACTAAGTGATTTTATAGTAGAGGCATATCCTGAATGTGCTTGATAGATCCCATTTTTTCATGAAAATAAAGATAGTCAAT
TTGACTGGACTTAAGACTTTATTATGTTTTCTGAGAAAGAATAAGATATCATTATTCTCTTTAATAAACTTTTGTCTCGT
ACGGAATACTATATGATTTCACCGTTTGTTTCATCAGAAACAATCTGGGACGGAAGGATTCGAACCTCCGAGTAACGGGA
CCAAAACCCGCTGCCTTACCACTTGGCCACGCCCCATTTCGGGTTTTATGCGACACTAATAAACACTAGTATGTTTATTT
GTTATTCGTCAATACCATTTCAATTACATAAAAAAGGAGGGATATTCTCTCGCTAGTATTCTACACATGCGGATAATATA
GAATCAAAAAAATGCATTGATCATTACATGGAATTCTATTAAGATATTATATGAAAGTCGAATTTATTCCACTCTCATTT
GAGAGTGCGAATACAAGGAGGTATTTTGTGTTTGGGAAAGTCCGAAGAAAAAAGATTTTGAATCTGCCTTTTCCTTCTTT
CCCTTAAAAAAATAACTCAAGAAAAATCCAATTATTTACTCTACAAGAATGAAATGCTTGTTATGCCTAATATACTTAGT
TTAACCTGTATCTGTTTTAATTCTGTTCTTTATCCTACTAGTTTTTTCTTTGCCAAATTACCCGAAGCTTATGCTATTTT
CAATCCAATCGTGGATATTATGCCTGTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTT
TTCGATGAAATCTTTAGTACTCTGTATGCCAAATTGAATGATGTGTTCATTCCAAAAAAAAATTAAAATGGGTAAAAGCC
GAGAAGTTTTATATTTTTATATTATGAACCTTCGATTCTCAAATTTAAATTCTTCTACATTGAATGGGTAGCTACAGCAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAG------C----------AGG----------TACCTAC
ACAATACCTAACCACCTAACCCTATTTTTGCTATTGATAAGAGTGCTTATTATAAATGAATTCTTGCAATTTTTTTCAAG
AATTCATTTTTTCA--TTTTAGGTATCAAAAAAAAACCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTT-AAAAAAAATCTTGGAGATTATGTAATGCTTACTCTCAAACTTTTT-GTTTATACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTCCGTTTTTTTTTC
TT----ATTGGATTTGTTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAA-AATTGTACAACGGATTAGCAATCCGCCGCTT
TAGTCCACTCAGCCATCTCTCCACGTTCCAAAGCGAAAGGTTTCCGTGATATGATATAGGCAAGAAATAAGAAATAATGG
TTGCAAAAAAA----ACCC-TTTTTTTCTTTCAAAAGTCTATAAAAATTATATTGCCAATTCCATTTTAGTTATATTCTT
TTTTCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr5D_1203
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------------------------------------------TATGCTATTTTCAATCCAATCGTGGATATTATGC--CT
GTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAGGCTGCTGTAAGTTTTCGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCCAAAAAA--A-TTTAAAAATGGGTAAAAGCCGAGAAGTTTTATATTTTTATAT
TATGAACCTTCGATTCTAAAAT----------------------------------------------------------
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--------------------------------------------TTAAATTCTTCTACATTGAATGGGTAGCTACAGCAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAG------CAGGTACCTAAAGG----------TACCTAC
ACAATACCTAACCACCTAACCCAATTTTTGCTATTGATAAGAGTGCTTATTATAAAAGAATTCTTGCAATTTTTTTCAAG
AATTTTTTTTTTGCATTTTTAGGTAT--AAAAAAAACCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTTAAAAAAAAATCTTGGAGATTATGTAATGCTTACTCTCAAACTTTTT-GTTTATACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTCAG-GTTTTTTTC
TT----ATTGGACTTGTTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAA-AATTGTACAACGGATTAGCAATCCGCTGCTT
TAGTCCACTCAGCCATCTCTCCACGTTCCAAAGCGAAAGGTTTCCGTGATATGATATAGGCAAGAAATAAGAAATAACGG
TTGC--AAAAAA--CCCCC-TTTTTTTCTTTCAAAAGTCTATAAAAATTATATTGCCAATTCCATTTTAATTATATTCTT
TTTTCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr5D_1203
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------TATGCTATTTTCAATCCAATCATGGATATTATGC--CT
GTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTTGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCC-AAAAA--A-TTTAAAAATGGGTAAAAGCCGAGAAGTTATATATTTTTATAT
TATGAACCTTCGATTCTAAAAT----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------TTAAATTCTTCTACATTGAATGGGTAGCTACAGCAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAG------CAGGTACCTAAAGG----------TACCTAC
ACAATACCTAACCACCTAACCCTATTTTTGCTATTGATAAGAGTGCTTATTATAAAAGAATTCTTGCAATTTTTTTCAAG
AATTATTTTTTGCA--TTTTTAGGTAT--AAAAAAACCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTT-AAAAAAAATCTTGGAGATTATGTAATGCTTACTCTCAAACTTTTT-GTTTCTACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTTAGTTTATTTTTC
TT----ATTCGATTTGTTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTACAGAAA-AATTGTACAACGGATTAGCAATCCGCCGCTT
TAGTCCACTCAACCATCTCTCCACGTTCCAAAGCGAAAGGTTTCCGTGATATGATATAGGCAAGAAATAAGAAATTACGG
TTGC--AAAAA----CCCC-CTTTTTTCTTTCAAAAGTCTATAAAAATTATATTGCCAATTCCATTTTAATTATATTCTT
TTTCCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr1D_1203
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------TATGCTATTTTCAATCCAATCGTGGATATTATGC--CT
GTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCC-AAAAA--A-TTTAAAAAAGGGTAAAAGCCGAGAAGTTTTATACTTTTATAT
TATGAACCTTCGATTCTAAAAT----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------TTAAATTCGTCTACATTGAATGGGTAGCTACAGCAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAG------CAGGTACCTA--------------------C
ACAATACCTAACCACCTAACCCTATTTTTGCTATTGATAAGAGTGCTTATTATAAAATAATTCTTGCAATTTTTTTCAAG
AATTCTTTTTTGCA--TTTTTAGGTATAAAAAAA--CCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTT-AAAAAAAATCTTGGAGATTATGTAATGCTTACTCTCAAACTTTTT-GTTTATACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTTAGTTTTTTTTTC
TT----ATTGGATTTGTTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAA-AATTGTACAACGGATTAGCAATCCGCCGCTT
TAGTCCACTCAGCCATCTCTCCACGTTCCAAAGCGAAAGGTTTCCGTGATATGATATAGGCAAGAAATAAGAAATAACGG
TTGC--AAAAAA--ACCCC-TTTTTTTCTTTCAAAAGTCTATAAAAATTATATTGCCAATTCCATTTTAATTATATTCTT
TTTTCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr5D_1208
--------------------------------------------------------------------------------
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-----------------------------------------------TATTTTCAATCCAATCGTGGATATTATGC--CT
GTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCCAAAAAA--A-TTTAAAAATGGGTAAAAGCCGAGAAGTTTTATATTTTTATAT
TATGAACCTTCGATTCTAAAAT----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------TTAAATTCTTCTACATTGAATGGGTAGCTACAGCAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAG------CAGGTACCTAAAGG----------TACCTAC
ACAATACCTAACCACCTAACCCTATTTTTGCTATTGATAAGAGTGCTTATTATAAAAGAATTCTTGCAATTTTTTTCAAG
AATTCTTTTTTGCA--TTTTTAGGTATAAAAAAAAACCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTT-AAAAAAAATCTTGGAGATTATGTAATGCTTACTCTCAAACTTTTT-GTTTATACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTCAGTTTTTTTTTC
TT----ATTGGATTTGTTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAA-AATTGTACAACGAATTAGCAATCCGCCGCTT
TAGTCCACTCAGCCATCTCTCCACGTTCCAAAGCGAAAGGTTTCCGTGATATGATATAGGCAAGAAATAAGAAATAACGG
TTGC--AAAAAA--CCCCC-TTTTTTTCTTTCAAAAGTCTATAAAAATTATATTGCCAATTCCATTTTAATTATATTCTT
TTTTCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr5D_1208
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-----------------------------------------------TATTTTCAATCCAATCGTGGATATTATGC--CT
GTTATACCTCTATTCTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAAATCTTTAGTACTCTGT
ATGCCAAATTGAATGATGTGTTCATTCCAAAAAA--A-TTTAAAAATGGGTAAAAGCCGAGAAGTTTTATATTTTTATAT
TATGAACCTTCGATTCTAAAAT----------------------------------------------------------
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--------------------------------------------TTAAATTCTTCTACATTGAATGGGTAACTACAGCAA
TAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAG------CAGGTACCTAAAGG----------TACCTAC
ACAATACCTAACCACCTAACCCTATTTTCGCTATTGATAAGAGTGCTTATTATAAAAGAATTCTTGCAATTTTTTTCAAG
AATTCTTTTTTGCA--TTTTTAGGTATAAAAAAAA-CCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT
TCCTT-AAAAAAAATCTTGGAGATTATGTAATGCTTACTCTCAAACTTTTT-GTTTATACAGTAGTGATATTCTTTGTTT
CACTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACGGAATCCTGGACGCGAGGAGTAAAAATTCAGTTTTTTTTTC
TT----ATTGGATTTGTTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCTTTCCAATTCGAAAGTCCCAAA
TGATCCAAGGGAGCGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAA-AATTGTACAACGGATTAGCAATCCGCCGCTT
TAGTCCACTCAGCCATCTCTCCACGTTCCAAAGCGAAAGGTTTCCGTGATATGATATAGGCAAGAAATAAGAAATAACGG
TTGC--AAAAAA--CCCCC-TTTTTTTCTTTCAAAAGTCTATAAAAATTATATTGCCAATTCCATTTTAATTATATTCTT
TTTTCTTA------------------------------------------------------------------------
-------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSS---------------------S------------------------------------
------------------------------------------------S-----------------S--S---S------
----------------------------S---------------------------------S-----------------
----------------------------S-------------------------------S-------------------
------------------------------S-------------------------------------------S-----
-------S--------------------------S-S-S---------------S----S--------------------
-----------S---S-----SS-------------S--S------------------S-------S--S----------
--------------------------------S-----------------------S-----S----S------------
S--------------------------------------------------S------S---------------------
--------------------------------------------------S----S---------S------------S-
--------------S-S--------S----SSS--------------------------S-------S----------S-
---S---------------SSSSSSSSSSSSSS------------SSS--------------------------------
-----------------------------S---------------------SS------------------------S--
--------S-----------------S--------------------S----S-S-----------------------S-
-----S----S---------S-----------S-------------------------SS--------S-----------
----S------------SSSS------------------------------------S----------------------
----------------------------------------------------------SSS-------------SSSS--
------------------------------S-------------------------------------------------
--------------------------------S-SS----------------------S--------S------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
-----------------------------S--------------------------------SS------SSSS------
----------------------------------------------------S---------------------S-----
---------------------------------------------------S-------SS-----------S-------
--------------------S--------------S----S---------------S------------S----------
--SSSS--------------S-----------------------S--------------------------S--------
--------------S--------------S---S---S----------S-------------------------------
----------------------S----S-----------S--S--------------------S----------------
----------SSSS-----S-------------S--------S-------------------------------------
-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_154
--------------------------------------------------------------------------------
------------------------------------------------------CCCTTTTCTCTCACGACGCT------
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-------------------------------------------------------------------------------
>reverse_4201
--------------------------------------------------------------------------------
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----------------------------------------TAATCCTGGACGCGAGAAGT--------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
