>input_sequence_84535
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------------------------------------------ATGCTACCATCGAAATGGTTGCTTGACAAGTCAATGTG
CAGCAAATGCTTTAGCTTGGTGATTGATGTTGGAATTTGCCCAGTAAAGTTGTTCAGGCAAAGATCCAACAACACCAATC
CACTCAAACGACCGATGCCGGAAGGCAGTGGACCGCCAAAAGAATTGTTTGAAAGATCAAGAAATGAAAGGTTTGAGGTC
TGTACAGGAAGAACTGACAGGTCTATAGTAGTTGAATTGTTGGTTTCAGAACTGGGAAGAGGCAGAGTTCCTGCGAAACT
GTTTCCTGAAAGATTAAGATAG----------------------------------------------------------
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>chr4B_1_TraesCS4B01G177500
GCATCAGAATACATACAAATCAGCTGCAGCTAGAATTTGATTT--AGAGAGAGCTGAGAACCATTACCAGACAGGTAGGT
AGACAGAGATGTGGCATCCACATAGTCTGATATGATGATCCTCTCGTGCTCCTTGGGACCCCAGTAGTAGCCTCGCAGTG
AGACTAGACTGGGATGTTTGACGCTGCCGAGCTTCTTTATTTCACGGGAAAACTCTTTCTTGCTCTTAGCAAACCCCTCC
TTCAGCCACTTCACTGTCAGCACATACCCATTGTCAAGAGTAGCCTTGTAGGATGTCCCGTGACAGCTCCGGCCGATGAT
CTCTGCCGGAGCACGAGAGAGCTCTTCAGCCGTAAACAACACCGAATTGTCGAAAAGATGCAAGTCCCCAACCAGTTTGT
CAGGAGAGTGCACCCTCAAGATGGAGTGATGATGGTGCGAGCGCACATCAGAAGGTGATGATATCAATGAAGGCATCGAA
GAAGTTGTGCTATCTTTAAGGCTGGAAATGCTACCGGTTGGCTGATCCAGAGATTGTGCTTCATGCTGTCCTTCCATGCC
ACCACGAGGCACGGAAACACCTCCATACTCTGCAGACGGTGATGATCCTAGCGAGACATCATGCATTTCAGAACTTGGAA
TTTCTGCACGTCTCTGAGGAGCACCCTGTCCTTGATTTACAGAATTCTTATTTTGGCCCTTGCCTTTTTCGCTGCTCTTC
CAGTTAGAGATCTTCCAATGGACAAGTAAAAGGACAATGATCCCGGTAACAAAGACAATAACACATGCAATCAATGCATA
CAGAATTCCACGCTTCATACCATGTTTCCTCCCACCTGATCCTTCAGGACTATTTGGTGACCCAGAGCGGGGAAGAACAA
GTAGTTCATTCCCTGGATGGAAAGATGAATCAGGAAATTTCAGCAAACTGTTCGGAACGGGGCCAGACAAATTGTTGCAT
GATACATTGAACTCTACAAGATCGTCCGGGAGGCCATCAGGTATGCTACCATCGAAATGGTTGCTTGACAAGTCAATGTG
CAGCAAATGCTTTAGCTTGGTGATTGATGTTGGAATTTGCCCAGTAAAGTTGTTCAGGCAAAGATCCAACAACACCAATC
CACTCAAACGACCGATGCCGGAAGGCAGTGGACCGCCAAAAGAATTGTTTGAAAGATCAAGAAATGAAAGGTTTGAGGTC
TGTACAGGAAGAACTGACAGGTCTATAGTAGTTGAATTGTTGGTTTCAGAACTGGGAAGAGGCAGAGTTCCTGCGAAACT
GTTTCCTGAAAGATTAAGATAGGTCAGCTTAGCTGCTGTAAAGAGATTTTTCAGTAAAGCTCCATGCAGCTGATTGAGAC
TAAGATCTATGGCAATCAACTCGGGATAGCTTCCGAGAACAGTCGGCAATTCTCCTGCTAGCAAGTTATCAGAAATCCTC
AATGAAGTCAGCCTCAAAAATTGGGTAGTCTGAACGGGCCAGGTTCCTGTTAATCTATTTGAGCTCAAATCAATCATCTC
AACATAATCTCCCCATGTATGGACAACTGATATGTTCCCTGAAAGCATGTTTCTACTCAAATCAACCACTGAACAGCTCC
CAAATGTGATTGGTAAAGTTCCCTGAAGGCTGTTAGATGACAGATTCAGGTACTTCAGATTCACTGATGTTACACGCCTA
ATTGGACCTGTGTAGTACAAGGGTTTAGATAAAATT----------------------AGTAATCGCAACACATCATCAT
TCACAAACATAGTATGGATTGCTTCGGTGCTCTGGAGGTTATTATGGCAACGGGAAAAGAAACGTGTTCAATACATGCAT
TGTTTGCATGGGTTATTACACTGCAACATATTAATTGTTCAAGCATAAGGCAAAAGTGG------TAGCACGAACGACAA
GTTTAATAAGGGAAAGCTTAAAA-CGATTTGTTTTTAACACAATCCTGTGAAATGAAAAGTAGAAAAATAAATCTACCTG
TGAGCTGGTTGCAGCTAAGGTCAAGTTGAGTCAACACCATGGAGGTTTCCCGGAATAGCGCTTCTGGAATGGACCCCGAG
AACTTATTGTTCTGCAGAAGCAACACCTTGAGGGAGATCATGAAGTTAAATGACGGGACGTTGCCACTAAGCGCATTGTA
ACTTGCATCGAACACCTCGAGGCTGTCGAACAAAGGCGTCGGATCGCTCTCAAATACTGGCCCTGACAGCACATTATGGC
TAACATTCAGGTACTGCAGAGTGCTAGCCACAGATGAGTTATCAGAGATTGATGCCAGGGACCCCGAGAACTGATTGCAG
CTGAAATCAAC
>chr4D_1
GCATCAGAATACATACAAATCAGCCGACGCTAGAATCTGATG--GAGAGAGAGCTGAGAACCATTACCAGACAGGTAGGT
AGACAGAGATGTGGCATCTACATAGTCTGATATGATGATCCTCTCGTGCTCTTTGGGGCCCCAGTAGTAGCCTCGAAGTG
AGACAAGACTGGGATGTTTGACGCTGCCGAGCTTCTTTATCTCACGGGAAAACTCTTTCTTGCTCTTAGCAAACCCCTCC
TTCAGCCACTTCACTGTCAGAACATACCCATTGTCAAGAGTAGCCTTGTAGGATGTCCCGTGACAGCTCCTGCCGATGAT
CTCTGCCGGAGCACGAGAGAGCTCTTCAGCCGTAAACAACACAGAATTGTCGAAAAGATGCAAGTCCCCGACCAGTTTGT
CAGGAGAGTGCACTCTCAAGATGGACTGATGGTGGTGCGAGCGCACATCAGAAGGTGATGATATCAATGAAGGCATCGAA
GACGCTGAGCTATCTTTAAGGCTGGAAATGCTACCAGTTGGCTGATCCACACATTGTGCTTCATGCTGTCCTTCCATGCC
GCCGCGAGGCACGGAAACGCCTCCATACTCTGCAGACGGTGATGATCCTAGCGACACATCGTGCATTTCAGAACTTGGAA
TTTCTGCACGTCTCTGAGGAGCATCCTGTCCTTGAGTTGCAGAATTCTTATTTTGGCCCTTGCCTTTTTCGCTACTCTTC
CAGTTAGAGATCTTCCAGTGGACAAGTAAAAGGACAATGATCCCGGTAACAAAGACAATAACACATGCAATCAATGCATA
CAGAATTCCACGCTTCATACCATGTTTCCTCCCACCTGATCCTTCAGGACTATTTGGTGACGCAGAGCGGGGAAGAACAA
GTAGTTCATTCCCTGGATGGAAAGATGAATCAGGAAATTTCAGCAAACTGCTTGGAACGGGGCCAGAAAAATTGTTGTAT
GATACATTGAACTCTACAAGATCGTCTGGGAGGCCATCAGGTATGCTACCATCAAAATGGTTGCTTGACAAGTCAATGTG
CAGCAAATGCTTTAGCTTGGTGATTGATGTTGGGATTTGCCCAGTAAAGTTGTTCAGGCAGAGATCCAACAACACCAATC
CACTCAAACGACCGATGCCCGAAGGCAGTGGACCGCCAAAAGAATTGTTTGAAAGATCAAGAAATGAAAGGTTTGAAGTC
TGTACAGGAAGAACTGACAAGTCTATAGTAGTTGAATTGTTGGTTTCAGAACTGGGAAGAGGCAGGGTTCCTGCGAAATT
GTTTCCTGAAAGATTAAGATAGGTCAGCTTAGCTGCTGTAAAGAGATTTTTCGGTAAAGCTCCATGCAGCTGATTGAGAC
TAAGATCTATGGCAATCAACTCGGGATAGCTTCCGAGAACAGTCGGCAATTCTCCTGCTAGCAAGTTATTAGAAATCCTC
AATGAAGTCAGCCTCAAAAATTGGGTAGTCTGATCGGGCCAGGTTCCTGTTAACCTATTTGAGCTCAAATCAATCATCTC
AACATAATCTCCCCATGTATGGACAACTGATATGTTCCCTGAAAGCATGTTTCTACTCAAATCAACCACTGAACAGCTCC
CAAATGTGATTGGTAAAGTTCCCTGAAGGCTGTTACATGACAGATTCAGGTACTTCAGATTCACTGATGTAACACGCCTA
ATTGGACCTGTGTAATACAAGGGTTTAGATAAAATTAGAGGCAATCGACATCATGATTAGTAATCGCAACACATCATCAT
TTACAAACATAGTATGGATTGATTCAGTGTTATAGAGGTTATTATGGCAACAACAAAA-AAACGAGTGCAATACATGCAT
TGTTTGCATGGGTTATTACACTGCAACATATTAATTGTTCAAGCATAAGGCAAAAGTGGTACTACTAGTACGAACGACGA
GTTTAATAAGGGAAAGCTTAAAA-CGACTTCTTTTTAACACAATCCTGTGCGATGAAGAGTAGAAAAA-AAATCTACCTG
TGAGCTGGTTCCAGCTAAGGTCAAGTTGAGTCAACACCATGGAGGTCTCCCGAAATAGCGCTTCTGGAATGGACCCCGAG
AACTTATTGTTCTGCAGAAGCAACACCTTGAGGGAGATCATGAAGTTAAACGACGGGACGTTGCCGGTAAGCGCATTGTA
ACTTGCATCGAACACCTCGAGGCTGTCGAACAAAGGCGTCGGATCGCTCGCAAAGACTGGCCCTGACAGCACATTATGGC
TAACATTCAGGTACTGCAGAGTGCTAGCCACAGATGAGTTATCAGAGATTGATGCCAGGGACCCCGAGAACTGGTTGCAG
CTGAAATCAAC
>chr4A_1
GCATCAGAATACATACGAATCAGCTGCCGCTAGAATTTGATGGAGAGAGAGAGCTGAAAGCCATTACCAGACAGGTAGGT
AGACAGAGATGTGGCATCTACATAGTCTGATATGATGATCCTCTCGTGCTCTTTGGGGCCCCAGTAGTAGCCTCGCAGTG
AGACTAGACTGGGATGTTTGACGCTGCCGAGCTTCTTTATCTCACGGGAAAACTCTTTCTTGCTCTTAGCAAACCCCTCC
TTCAGCCACTTCACTGTCAGCACATATCCATTGTCAAGAGTAGCCTTGTAGGATGTCCCGTGACAGCTCCGGCCGATCAT
CTCTGCCGGAGCACGAGAGAGCTCTTCCGCTGTAAACAACACAGAATTGTCGAAAAGATGCAAGTCCCCGACCAGTTTGT
CGGGAGAGTGCACTCTCAAGATGGAGTGATGGTGGTGTGAGCGCACATCAGAAGGTGATGATATCAATGAAGGCATAGAA
GACGCTGAGCTATCTTTAAGGCTAGAAATGCTACCAGTTGGCTGATCCACACATTGTGCTTCATGCTGTCCTTCCATGCC
ACCACGGGGCACGGAAATGCCTCCATACTCTGCAGACGGTGATGATCCTAGCGACACATCGTGGATTTCAGAACTTGGAA
TTTCTGCACGTCTCTGAGGAGCACCCTGTCCTTGATTTACAGAATTCTTATGTTGGCCCTTACCTTTTTCGCTGCTCTTC
CAGTTAGAGATCTTCCAATGGACAAGTAAAAGGACAATGATCCCGGTAACAAAGACAATAACACATGCAATCAATGCATA
CAGAATTCCACGCTTCATACCATGTTTCCTCCCACCTGATCCTTCAGGACTATTTGGTGACCCAGAGCGGGGAAGAACAA
GTAGTTCATTCCCTGGATGGAAAGATGAATCAGGAAATTTTAGCAAACTGCTCGGAACGGGGCCAGAGAAATTGTTGTAT
GATACATTGAACTCTACAAGATCGTCTGGGAGGCCATCAGGTATGCTACCATCGAAATGGTTGCTTGACAAGTCAATGTG
CAGTAAATGCTTTAGCTTGGTGATTGATGTTGGGATTTGCCCAGTAAAGTTGTTCAGGCAGAGATCCAACAACACCAATC
CACTCAAACGACCGATGCCCGAAGGCAGTGGACCACCAAAAGAATTGTTTGAAAGATCAAGAAATGAAAGGTTTGAAGTC
TGTACAGGAAAAACTGACAGGTCTACAGTAGTTGAATTGTTGGTTTCAGAACTGGGAAGAGGCAGAGTTCCTGCGAAATT
GTTTCCTGAAAGATTAAGATAGGTCAGCTTAGCTGCTGTAAAGAGATTTTTAGGTAAAGCTCCATGGAACTGATTGAGGC
TAAGATCTATGGCAATCAACTCAGGATAGGTTCCGAGAACAGTTGGCAATTCTCCTGCTAGCAAGTTATTAGAAATCCTC
AATGAAGTCAGCCTCAAAAATTGGGTAGTCTGACCGGGCCAAGTTCCTGTTAATCTATTTGAGCTCAAATCAATCATCTC
AACATAATCTCCCCATGTATGGACAACTGATATGTTCCCTGAAAGCATGTTTCTACTCAAATCAACCACTGAACAGCTCC
CAAATGTGATTGGTAAAGTTCCCTGAAGGCTGTTGGATGACAGATTCAGGTACTTCAGATTCACTGACGTTACACGCCTA
ATTGGACCTGTGTAATACAAGGGTTTAGATAAAATTAGAGGCAATCGACATTGTGATTAGTAATCGCAACACATCATCAT
TTACAAACATAGTATGGATTGATTCGGTGCCATAGAGGTTATTATGGCAACGGAAAAA-AATCGTGTTCAATACATGTAT
TGTTTGCATGGGTTATTACGCTGCAACATATTAATTGTTCAAAGTG---------GTAG------TAGTACGAACGACAA
GTTTAATAACGGAAGGCTTAAAAACGAGTTCTTTTTAACACAATCCTGTGCAATGAGGAGTAGAAAAACAAATCTACCTG
TGAGCTGGTTGCAGCTAAGGTCAAGTTGAGTCAACACCATGGAGGTCTCCCGAAATAGCGCTTCTGGAATGGACCCCGAG
AACTTATTGTTCTGCAGAAGCAACACCTTGAGGGAGATCATGAAGTTAAACGACGGGACGTTGCCAGTAAGCGCATTGTA
ACTTGTATCGAACACCTCGAGGCTGTCGAACAAAGGCGTGGGATCGCTCGCAAACACTGGCCCTGACAGCACATTATGGC
TAACATTCAGGTACTGCAGAGTGGTAGCCACAGATGAGTTATCAGAGATTGATGCCAGGGACCCCGAGAACTGGTTGCAG
CTGAAATCAAC
>SNPs
---------------------------S-------------SS-------------------------------------
------------------S--------------------------------S-----S----------------------
----------------------------------------S---------------------------------------
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------------------------------------------S--------------------------S----------
-------------S-----------------S------------------------------------------------
--S-S--S---------------------------S-------------S-S----------------------------
------------------S-----------------------------------S-----S-------------------
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--------------------------------------------------S----------------S---------S--
--------------------------S-----------------------------------------------------
---------------------------------S--------------------------S-------------------
-------------------S--------------------------------------------------------S---
------------------------------------------------------------------------------S-
----------------------------------------------------S---------------------------
---------------------------------------------------------------------S----------
---------------------------------S----------------------------------------------
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--------------S-----------------------------------------------------------------
-S-------------------S---------S-S-------------------S----S---------------------
--------------------------------------------------------------------S-----------
---------------------------S--S-------------------S------S----------S-----------
----------------------------------------------S-----S---------------------------
--------------------------------------------------S---------------S-------------
-------------------------------------------------S----S-------------------------
-------------------------------------------------------------------------S------
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>forward_958
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----------------------------------------------------------GGGGCCAGACAAATTGTTGC--
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>reverse_2047
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----------------------------------------------TTCCCGGAATAGCGCTTCTG--------------
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