>input_sequence_84524
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----------------------------------------------------------------------ATGGGGAAAA
GAGCCAGCTCGAACGCGGGGAAAAAGGCAGCCG------GCGCCGGCGCCCATCACAGAAAAGAGCGGCGCGATGAGACG
GAGGCGCAGAAGGTAGAGCGGC------TGCAGGCAACTCTGGCGTTTGTGAAGGCGGCGCACGCGGACGCCATGCTCTA
CCTTGACATGGAGGAGGAGGACGTGGAGGAGGAGTACCGGAGGGCGGGCAAGCTCCACACGTACGACGAGGCCAAGGAGT
GGAAGAAGCGTCTCGCCAGGGTCGCCAAGCTCTACCCGCCTCCCAAGCACATCATGGAATAG------------------
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>chr3A_1_TraesCS3A01G134700
GAGCCAAAATGGTGCAGCGGTGGGAGGAGCCAGAGCAAGGTTGGATCAAGGGGAACGCTGATGGAGCGGTCGCCAAACAA
GGTGCCAAAGGAGGGGGTGGGTCAATTCTGTGAGACCATATGGGCGGGTGTCTGGCAGCTGCTTGTCACTTTTTCCCTCA
CTGCGACGACCCGGAAAGTGCGGAAATCAGGGCATGTTTGAAACTGCTTCGGCTTGCACGAGAGCAGCAGGTTCAGAGAT
TGTGTGTAGAGCTGGACTGCCAAAGCGTGGTGAAGATGATCAATGGAGGGGATAAGTGCTTGGCGTCGGCCGGGCCTTGG
GTGCAGGAAATAAAGCTGCTGTTAGGAGAGTTCACTGATTTCAGGGTGGTCTGGACTCGTAGTTCTGCAAATGTGGCTGC
TCACAAGCTAGCTAGGGTTGGTGTAGGTGATGAAAGAGACCAAGTGTGGGTGGGGATGCCCCCTGACTTTATTCTAGACG
TTGTAGCTAATGACATTCCGAACCTGGCTTAAGTAATGAATGTGCTTTACCTCAAAAAAAAAAAGCTCCGCCACTTTTGG
CCAAGGACGAGCCTGAAACGATGAACGCTCAAACGTGGAACGTGTTAATGTGGGAAGGATTGACAAAAAGAAAAACGAAA
GCAGAATGGGGAATCACTTTTTTTTAGAATTTTTTAATTTTTTTATAAAACAACCATAGCCTTTTTTAGATATAATACAT
ATATACTCTGGAATCCAGTCTATTTTATACTGTATTTTGACGGGAATCCGAAATTGTGTCTATTTTATATTTTGATGACG
GAAATCCGAAATTGTGTCTGAACGGATCTGGTTCTCTTCAAACTTGGTATCCAAACAATCAGTCTATAAATAAAGGAGAT
A-----------------ACCATAGAACAGAATAGGCTACGGGGATTTGTGGAAGCAAACAATAAATCCACAACAACGCA
TAGAGG-----------ATTCGGGGAAGCAAACTCTGGCAGGAGAGA--GGGGAGATCCATCGAGGCAGCATGGGGAAAA
GAGCCAGCTCGAACGCGGGGAAAAAGGCAGCCG------GCGCCGGCGCCCATCACAGAAAAGAGCGGCGCGATGAGACG
GAGGCGCAGAAGGTAGAGCGGC------TGCAGGCAACTCTGGCGTTTGTGAAGGCGGCGCACGCGGACGCCATGCTCTA
CCTTGACATGGAGGAGGAGGACGTGGAGGAGGAGTACCGGAGGGCGGGCAAGCTCCACACGTACGACGAGGCCAAGGAGT
GGAAGAAGCGTCTCGCCAGGGTCGCCAAGCTCTACCCGCCTCCCAAGCACATCATGGAATAGATCAGTGAATATACCAAG
TACCTCGAGGAAGACGAGGACGACTTCAAAATAGGCCTTTGTTCACTGATCGAGGTGAAATCAGATTTCGAGAAATCTTT
TTAGTGAAGGGCGCTCCGCGCGGTGTGGTGTTCGTCCTTCTTTTGGCATCGTGGTTCGTATTTGTTGGGCGGTTGTTTTT
TACGCGTGATT--------------ACTCCCGACATATTTGCGCTGAT--------------------------------
------------------------------------------------------TAGGTTCGTATTCGTCGGATCTTTTT
GTTGGTTGGTTTCCTCTTTAGTGTTGTTATTATACGTTTCTTGTTAATGGATAGTACAATACTATAGTTGTAACTAGAGA
AGATTCTTTCATGTATTTATGATTTTTATTATTTCCTAATAAGATATGCTTCCAACGATTTTGTCAATCTCTCTTTACTT
TAGGATGCTAATATTGCGCCTACCTTTGCTCAGATCCTGGTCTGACTAAGAGCAATTCTAGTTGATCCTTAAAAGTTAGA
GGAGTGTACTCTTGGAAAAAAGCTAGAGGAGTAAACGGCGGAGTAAAGTTAGAAGAGTAAACTTTTACTCCTCTATAGGT
CGTTGCATCTAGCCGATTCCCTCAACTTAGTGAAGAATTTTTTTTGTGCATAAGTTGTTTATCCTACCGCATGAAATTCA
AACACATCATAATATATACCATAAAACACTCGAATTTGAAAAATGCATAACATAATTGTTAACAAGCATATTTCATCCAA
AAGGCATCACTTCAAATACAAAGTTTGATACCATGTGTTATGTTCTGGATTGGGGCCATCCAATGTAATGCACGAACTCA
AATAATGTCCTCATCAAAGAAATCACCACCGCCACCACCGTGCACATGGCCACCACCATCACTACTTCACCATCATCAAC
ACTCTCTCGGCCACCATCACCACCACCACGATCCTCCTCAGCGCTTCCCTTGGGCTAGACGTACACAGCATCACGCTTGG
CAGGTGGCCAATCGGTGATGTGAGTGATTTGCGTGGCGACTT
>chr4D_3
--GCCAAAACGGTGCAGCGGTGGGAGGCACCAGAGCAGGGATGGATCAAGGGGAGCGTTGATGGGGCGGTCGCCAAACGA
GGAGCTAAAGTAGGTGGTGGGTCAATTCTGCGCGACCATCAGGGGGGTTTTGTGGCGGCGGCCTGCCACTTTTTCCCTCA
CTACGACGACCCGGAGAGCACTGAAATCAAGGCATTTT-GAAGCTGCTTCAGCTTGCATGAGAGCAGTAGGTTCAGAGAA
TATGTATAGAGCTGGATTGCCAAAGCGTGGTGAAGATGATCAATGGTAAGGATAAGTGTTTGGCGTCGACCGGTCCTTGG
GTGCAGGAAATAAAGCTGCTGTTAGGAGAGTTTACTGATTTCAGGGTGGTGTGGACTCGTCGTTCAGCAAATGTGGCTGC
ACACAAGCTAGCTAAGGTTGGTGTAGGTGATGAAAGGGTCCAGGTGTGGGTGGGGATGCCTCCAGATTTTATTCTAGATG
TTGTAGCCAATGACATTCCGAACCTGGTTTAAGTAATGAATGTGCTTTACCTTAAAAAAA--------------------
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>chr3B_781
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------------------------------------------------------------TATTTTATATTTTGACGGG-
--AATCCGAAATCGTGTCTGAACGGATCTGATTCTCTTCAAACTTGGTATCCAAACAATCCGTCTATAAATAAAGGAGAT
AACCTGACGTGCTGT-ACACCATAGAACAGAATAGGCTGCGGGGATTTGTGGAAGCGAAAAATAAATCCACAACCACGCA
TAGAGGCTTGCGC--GGATTCGGGGAAGCAAACTCTGGAAGGAGAGA--GGGGAGATCCATCGAGGCAGCATGGGAAAAA
GAGCGAGCTCGAAAGCGGGGAAAAAGGCCGCCGTCGCCGGCGCCGGCGCCAATGACAGAAAAGAGCGGCGCGATGAGACA
GAGGCGCAGAAGGTAGAGCGGC------TGCAGGCAACTCTGGCGTTTGTGAAGGCGGCGCACGCGGACGCCATGCTTTA
CCTTGACATGGAGGAGGAGGACGTGGAGGAGGAGTACCGGAGGGCGGGCAGGCTCCACACCTACGACCAGGACAATGAGT
GGAAGAAGCGTTTGGCCAGGGTCGCCAAACTCTACCCGCCTCCCAAGCACATCATGGAAGAGATCAGTGAATATACCAAG
TACCTCGAGGAAGACGAGGACGACTTCAGGATAGGCCTTTGTCAATTGATCGAGGTGAAATCAGATTTTGAGAAATCTTT
TTAGTGAACGACGCTCCGCGGGGTGTGGTGTTCGTCCTTGTTCTGGCATCGTGGTTCGTATTTGTCGTGCGGTTGTTTTT
TAACGCGTGGTTGTATGTATGGTACACTCCTGTCGTATTTGCGCTGTTTATTACCTCTCTGTTTTCAAATAGATAACTCA
ACTTTGTACTAACTTTAATACAAAGTTGAGTCATCTATTTTGAGACGGAGGTAGTAGGTTCGTATTTGTCGGATCTTTAC
GTCGGTTGGTTTCCTCTTTAATATTGTTATATGTTATTTACAATTTACAATATAGTAGAAGTAT----------TAGAGA
AGATTCTTTCATGTATTTATGATTTTTATC---TCCTAATTAGATGTGCTTCAAACGATTTTTCCAATCTCTGTTTACT-
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>chr3D_781
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------------------------------------------------------------TATTTTATATTTTGTCGGG-
--AATCCGATATCGTGTCTCAGCGGATCTGATTCTCTTCAAACTTGGTATCCAAACAATCCGTCTATAAATAAAGGAGAT
AACCTGACGTGCTGTTACACCGTAGAACAGAATAGGCTGCGGGGATTTGTGCAAGCAAACAATAAATCCACAACCACGCA
TAGAGGCTTGCGGGGGGATTCGGGGAAGCAAGCTCTTGAAGGAGAGATGGGGGAGATCCATCGAGGCAGCAGATG-----
----------------GGGGAGAAAGGCCGCCG------TCGCCGGCGCCCATCACAGAAAAGAGCGGCGCGATGAGACG
GAGGCGCAGAGGGTAGAGCGGCTGCAGCTGCAGGCAACTCTGGCGTTTGTGAAGGCGGCGCACGCGGACACCATGCTTTA
CCTTGACAT------------------GGAGGAGTACCGGAGGGCGGGCAAGCTCCACACTTACGACGAGGCCAAGGAGT
GGTAGAAGCGTCTCGCCAGGGTCGCCAAACTCTACCCGCCTCCCAAGCACATCATGGAAAAGATCAGTGAATATACCAAG
TACCTCGAGGAAGACGAGGACGACTTCAGGATAGGCCTTTGTCAATTGATCGAGGTGAAATCAGATTTCGAGAAATCCTT
TTAGTGAGCGACGCTCCGCGCGGAGTGGTGTTCGTCCTTCTCTTGGCATCGTGGTTCGTATTTGTCGTGCGGTTGTTTTT
TACGCGTGATT---------------------------------------------------------------------
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>SNPs
SS-------S-----------------SS--------S--S-------------S--S------S-------------S-
--S--S----S---S---------------S-S------SS---S--S-S-S----S--S--S--S--------------
--S------------S--SS-S-------S-----S--S---S-------S-------S--------S-----------S
-S---S----------S-----------------------------SSS---------S---------S----S------
--------------------------------S-----------------S---------S----S--------------
S-------------S---------------------S-S---S-----------------S--S--S-----------S-
-------S-------------------S------------------------S-------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-SSS
SS----------S-----------------S-----------------------------S-------------------
--------------------------------------S-----------------------------------S-----
--------------------------------------S------------------------------------S----
----S--------S--------------S---------------------------------------------------
-----------------------------------------------------------------------------S--
------------------------------------------------------------S-------------------
----------------------------S------------------------------S--------------------
----------------------------SS------------SS-S----------------------------------
--------S-S------------------------------------------------------S-S------------
------------------------------S-S-S-----------S---------------------------------
------------------------------------------------------------------S-----------SS
--S-----------------S-S-------SSSSSS---SSSS--S-SSSSSSSSSSS-SSSSSSSSSSSSSSS------
-----------------------------SSSS-------S----S------S---------SS--------S------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_588
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--------GAGCCTGAAACGATGAACGC----------------------------------------------------
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>reverse_2201
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----------------------------------------TGTTCTGGATTGGGGCCATC--------------------
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