>input_sequence_84522
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----------------------------------------------------------------------------ATGT
CGACCCGACTGGCCGCGGTGGTGCGGTGGTGCGGCGGCGCGCGGAGTGAGAGGCCGAGGCTGCGGCGACAGCGCAGCGGC
AGGACGGTGCAGCTCGGCGGGCGCCGCAGGAGCGGCGGTCGCGGGTGCAGGCTGGCCGTGTCGCGTCTGGTGCGGTGGCG
GCTGGTGGCCGAGCTGCTGCGGCCCATCAGGAAGGCGCTGATTGAGATGGCGGCCGGGCAGCGGCACCCTGTGGCGCTGC
CGCTGGTTAGCTTCCC----------------------------------------------------------------
-----------------------------GTTCGTCGGCGCGCTCTCGCTCCCGGGCACCGTCGCTTGA-----------
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>chr2D_1_TraesCS2D01G499300
CCAGTACAGCACGACAGCTATAATACTTA-TAAAATAATTCTCCTCACAAGAAAAGATAAGATATTAAACCACGAAACGA
CAACATTTTTCCTGCAAAAAAAGAAAAGAAACCACGACATTTAGAATATTAACACT-ATCACACGTACTTGAAAGGACCA
GCTAGGCAGTAAACAAGAGCAAATTCCTTCTAATCAGGGTCCAGATAA----CCTTATTAAAATGCTAAAGCTTCCTCAT
AGGACATGCCCCCCTTCGAAATCCCAATACTTAGTATTACTTCGAACCCACCAAGAGCTGGCCTTCACGCTCTTATCAC-
CAAATATTCATTATTATTTATTGACAT-AA-TTAAAGTTAAGCAATTTGCCATGTTCTGACATGGAAGCTAGCGATCAAT
CGAGCTGATAAAAGTTTCT--CATGATTTAGCCAGCCTCGGAGATGGTCATCTTGTGGTACATTATACTCCCTCTGTAAA
GATATATAAGAGCATTTAGATCACTATTAGTGATCTAAATGCTCTTATATTTCTTTACAGAGGGAGTACAATATAAATAC
ATATGTGCTCATTAATCTTTGCTTAATTTAGATTTATAGCTAGCTTTTGTCCCATGATGAGATCACATCCTTTTTCTCTC
ATGGGTCATGTAACACTTGGGCTGTGTGCCAATGATTATAGCACATATGCGTAGTACTACTGGTAGGCCTTGCTAGCTAG
CCCGGCTAACTTCCAG---TGACGGGAAATCATCACGCCATCATCATCA---CCAGTTCACTACAACCAAATCGCAGCAG
GCTACACATTATTAATTACCATTCCAATCCTCACATACTTAATTAGCTAGCTGAAGTGCCTCTCCC---CTCTCACACTC
GGTCCACTATATAAACCTTCACTGGTTCTA-TCACACAGCAAAGCAAATTGATCCCTTGCACACCACTCGAAAGATCCAA
CAGAGCTACTAGCAGCCAGC-----TATAGCAGAGCCGAACAGAGTGCGGT----------AGTGTATTTCTGGCCATGT
CGACCCGACTGGCCGCGGTGGTGCGGTGGTGCGGCGGCGCGCGGAGTGAGAGGCCGAGGCTGCGGCGACAGCGCAGCGGC
AGGACGGTGCAGCTCGGCGGGCGCCGCAGGAGCGGCGGTCGCGGGTGCAGGCTGGCCGTGTCGCGTCTGGTGCGGTGGCG
GCTGGTGGCCGAGCTGCTGCGGCCCATCAGGAAGGCGCTGATTGAGATGGCGGCCGGGCAGCGGCACCCTGTGGCGCTGC
CGCTGGTTAGCTTCCCGTTCGTCGGCGCGCTCTCGCTCCCGGGCACCGTCGCTTGACGCGGGACGGGGCGTCCGGCGAGA
GCGGTGGCGCTGCCGCTGGTTAGCTTCCCGTTCGTCGGCGCGCTCTCGCTCCCGGGCACCGTCGCTTGACGCGGGACGGG
GCGTCCGGCGAGAGCGCGAGAAGGCGATTCA-CTTCACGTGTGGTGTAACGAATCTGTTGGGAGTTAACCACGACGTGGA
GTGAGCCCTTGTCCGCTAC-------------A-------------ATCACCGAGTAGGATACGTATTGGCTAGTTTAGC
-TCCCATTTATACTCTTGTAAACCCCGTGTAAACA--ACCAGATCTGAAAGC-------AATAATATCCGGATCCTGATA
AGTGATAAGTGCCACACATTTGACGTGAACACATGACAATTTCGCATGTTTATGGTCAGTTTAATAACGCGGGGATGACA
AGTTCGGATGGCAAGTTTTAGTTTATTTTTTGAGTTTTCTTTTCTTTTCGAATGACAAATTTAGTTATAAAAAACGTTAG
GACGGGATTACTTCGTGTCACACATGTGGCACTTATCATTTGAGTAATATTCTCAGGAGCGACACCGTCATGTTGCCACC
CAATCGGCGTCCCGTGTTCTTGTGTTGAGCTAGCTCAGATCGATCATGCCAGCCGGCGGCTCTAGTACGATC--CAGCAG
TAGCTAGCTGGTTACGATCCAGAAGTTAGG----TTGGTGCTTGCAGCTTGCGTACTGTCTCCAG--GAAGAAACAAATC
AAGGGTGCCCTCTGACCTCTCTACTTACACATCTCGTC------------------------------------------
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-----------------------------GGAAAGTAATCGCCGAGCCGTAGTACCTACTTGAGCCAACATAGGTATGTG
TTCCTCGAGGGAAAGTACTCGTCACTGGAGCGAGATAAAAACGTGTTTTTTTAGGCAAAAACGTGTGATCCGGGCCTAAT
AAGCCAACAATTTGGTGGTAGCTCCTGTATCTGGGCCTCCTGCCCTGGTTGGGCTTCAAGGTGGAGCGCCCCTTTCCTGG
GCTCA--CGCTGCTGTTATTGTTCGATGATGCAAATACAGAGGCGTGATTGCCT
>chr2A_1
CCAGTACAGCGCGACAGCTAAAATACTTTTTAAAATAATTCTCCTCACAAGAAAAGATAAGATATTAAACCACGAAACCA
CAACATTTTTCCAGCAAAAAAA----AGAAACCACAACATTTAGCAAATTAGCACTAATCACACGTACTTGAAAGGACCA
GCTAGGCAGTAAACAAGAGCAAATTCCTTCTATGCAGGGTCCAGATAA----CCTTATTAAAATGCTAAAGCTCCCTCAT
AGGACATGCCCCCCTTCGAAATCCCAATACTTAGTATTACTTCGAACCCACCAAGAGCTGGCCTTCACGCTCTTATCACA
AATATATCCATTATTAATTTGTCGACATAATTTAAAGTTAAGCAATTGGCCATGTTCTGAAATGGAAGCTAGCGATCAAT
CGAGCTGATAAAAGTTTCT--CATGATTTAGCCAGCCTCCGAGTTGGCCATCTTGTGGTACATCATAC------------
---------------------------------------------------------------------AATATAAGTAC
ATATGTGCTCCTTAAACTTTGCTTAATTTAGATTTATAGCTAGCTTTTTTCCCATGATGAGATCACATC--TTTTTTCTC
ATGGGTCATGT-ACACTTGGGCTGTGTGCCAATGATTA--GCATATATGCGTCGTCCTACTGGTAGACCTTGCTAGCTAG
CCTGGCTAACTTCCAG---TGGCACGAAATCATCACGCCATCATCATCA---CCAGTTCACTACAACCAAATCGCAGCAG
GCTACACGTTATTAATTACCATTTCAATCCTCACCTACTTAATTTGCTAAGCTGATAGCCA----CTCTCTCTCACGCTC
GCTCCACTATATAAACCTTCACCGGTTCTGGTCACACAGCAAAGCAAATTCATCTCTTGCACACCACTCGAAAGATCCAA
CAGAGCTACTAGTAGCAGCTAGCTATATAGCAGAGCCGAACAGAGTGTGGT----------AGTGTATTTCTCGGCATGT
CGACGAGGCTGGCCGCGGTGGTGCGGTGGTGCGGCGGCGCGCGGAGCGAGCGGCCGAGGCTGCGCCGGCGGCGCAGCGGC
AGGACGGTGCAGCTCGGCGGGCGGCGCAGGAGCGGCGGCCGCGGGTGCAGGCTGGCCGTGTCGCGGCTGGTGCGGTGGCG
GCTGGTGGCCGAGCTGCTGCGGCCCATCAGGAAGGCGCTGATGGACATGGCGGCCGGGCGGCGGGGGCT-----------
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--GGTGGCGCTGCCGCTGGTCAGCTTCCCGTTCGTCGGCGCGCTCTCGCTCCCGGGCACCGTTGCCTGACGCGAGACTGG
GCGTCCGGCGAGAGCGCGAGAAGGCGATTTCGCTTCACGTGTAACGACGATGTG--------------------------
--GAGTCCTTGTCCAGTACGGGATTGGAGTTGGAGCCTTGGAGGCCATCACCCAGTAGGATAGGTACTGGCTAGTTTAGG
TTCCTATTTATACTCTTGT-AACCCCGTGTAAACA--ACCAGATCAATCAATCAAAGCAAA-------------------
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--------------------------------------------TAATATTCCCACGAGAGAGACGGTCCTGTTGCGATG
CAATCGGCGTCCCGTGTTCTTGTGTTGAGCTAGCTCAGATCGATCGTGCCAGCCGGCGGCTCTAGTAGCTAGGCCTTGA-
--------------------------TAGC----TTGGTGCTTGCAGCTTGCGTATTGTGTCTCCAAGAATAATC-GATC
AATGGTGGGCGGTGGCCTCTGTACCTACGCATCTCGCC------------------------------------------
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-----------------------------GGAAAGTAATCGCCGGGCCGTAGTACGTACTTGAGCCGACGTAGCTACGTG
TTCCTC--------------------------------------------------------------------------
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>chr2B_127
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-----------------------------------------------ATTAACACCAATTGCACAAACCTGAAAGGACCA
GCTAGGCAGTAAACAAGTGCAAATTCCTTCTAATCAAGGTCCAGATATATAGCCTTACTAAAATGCTAAAGTTTTCTCAT
AGGACACCTCTCCCTTGGAAGCCCCAATCCTTAGTATTACTTGGAACCCACCAAGAGCTGGCCTTCACGTTCTTATCGC-
AATATATCCATTATTAATTTGTCAAGACAA-CTAAAGTTAGGCAATTGGCCATGTTCTGAAATGGAAGCTAGCGATCAAT
GAAGTTGATAAAAGTTTCTTGCATGATTTAGCCAGCCTCCGAGTTGGCTATCTTGTGGTAGATTAT--------------
---------------------------------------------------------------------AATATAAGTAC
ATATGTGCTCCTTCAACTTTGCTTAATTTAGATTTATAGCTAGCCTTTTTCCCACGATGAGATCACATC--TTTTTTCTC
ATGGGCCATGT-ACACTTGGGCTGTGTGCCAATGATTA--GCATATATGCGTA---CTACTGGTAGGCCTTGCTAGCTAG
CCTGGCTAGCTTCCAGCAGTGACGGGAAATCATCACGCCATCATCATCATCACCAGTTCACTACCACCAAATCGCAGCAG
GCTACACATTATTATTTATCATATCGATCCTGGCCTACTTAATTTGCTAAGCAGATTCTCTCTCTCTCTCTCTCACGCTC
GCTCCACTATATAAACCTTCAACGGTTCTGGTCACACAGCAAAGCAAATTGATCTCTTGCACACACCACTCAACAGAG--
--------CTAGCAGCTAGC-----TATAGCGGAGCCGAACAGAGTGCAGCAGAGTACTAGAGTGTGTTTCTCGGCATGT
CGACAAGGCTGGCCGCGGTGGTGCGGTGGTGCGGCGGCGCGCGGACTGAGCGGCCGAGGCTGCGACGACGGCGCAGCGGC
AGGACGGTGCAGCTCGGCGGGCGGCGCAGGAACGGCAGCCGCGGGTGCAGGCTGGCCGTATCGCGGCTGGTGCGGTGGCG
GCTGGTGGCCGAGCTGCTGCGGCCCATCAGGAAGGCGCTGCTTGAGATGGCGGCCGGGCGGCGGCACC------------
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-CGGTGGCCCTGCCGCTGGTCAGCTTCCCGTTCGTCGGCGCGCTCTCGCTCCCAGGCACCGTCGCTTGACGCGAGAC-GG
GCGTCCGGCGAGAGCGCGAGAAGGCGATTCA-CTTCACGTGTGGTGTAACGAATCCGTTGGGAGTTAACCACGACGTGGA
GTGAGCCCTTGTCCGCTACAGGCTTGGGTACAA-------------ATCACCGAGTAGGATACGTATTGGCTAGTTTAGC
-TCC---------TCTTGTAAACCCCGTGTAAACTATACCAGATCTCAAATC-------AA-------------------
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--------------------------------------------TAATATTCTCAGGAGGGACACCGTCATGTTGCGATC
CAATCGGCGTCCCGTGTTCTTGTGTTGAGCTAGCTCAGATCGATCGTGCCAGCCGGCGGCTCTAGTACGATCCACAGCAG
TAGCTAGCTGGTTACGACGATCCAGGAGTTAGCTTTTGTGCTTGCAGCTTGCGTATTGTCTCCAG--GAAGAATC-AATC
AAGGGTGCCCTCTGACCTCTGTACTTACACTTCTATACTACTATTAAACAATCAAACAAAAATTTATTTAAGTACACCCC
ACAAAGCGTACACAGATCCAATACCACCGCACGATTAGGCCCACTAAAATCAATCTAACGATTAGCCTTAACCTAAACCA
TTTTCTATGTGCACTTAGCAATTTACATTGACTGACCATACTCCACCGTGGAGGAAAATATGAAACTCCACGCCTGAGCA
ATTAAGAAACTAATAATCACGGGTGCATCCTATTCTAGGAAACTAAATCAGAGTGCATCCATCCTATTAGGAAACTAATC
TCAGACAAATCCATCCTATTAAAAAACTTATATCGGACGCATCCATCCTATTAGAAAGCTAATCGCGAGCCGCCTGCCGC
CATCATGCGCCACGATGGGGGAAGCGCGAGGAGCTTCGTCTTCCTCCGGGAACACACGTGCTATCGCCGCCATCGTCTTC
TGGCTGGAGGCCAAGCGCTCTTCTGCCGCTACTGCGACGACTCCATCCACGTCTAGGGCATGCTCTCCGGCAACCATCGG
CATCCGCGTTGACTTCAGCTCCGTTCGCAGCACCCACGTCGACAAAGTGTCTGTTCAGTGGGTGCATGTGCATTACAAAT
TAAATAAGAATCGTGGGGCTTCAAGCAATCTAGAATTATAGATTTGGGATTATCTTAGGTTGCCGATTACTGTACTGAAA
ATGTGTAATTATATATGGCACGTACATAAAAATGCAGCAATCTTGTCTTATCTATACTACTATTAAACAATCAAACAAAT
TTTTTTAAGCACACCCCACAAAGCGTACACAGATCCAATACCACCGCACGATTAGGCCCACTAAAATCAATCTAACGATT
AGCCTTAACCTAAACCATTTTCTGTGTGCACTTAGCAATTTACATTGACTGACCGTACTCCACCGTGGAGGAAAATATGA
AACTCCACGCCTGAGCAATTAGGAAACTAATAATCACGGGTGCATCCTATTCTAGGAAACTAAATCAGAATGCATCCATC
CTATTAGGAAACTAATCTCAGACAAATCCATCCTATTAAAAAACTTATATCGGACGCATCCATCCTATTAGAAAGCTAAT
CGCAAGCCGCCTGCCGCCATCATGCATGCTAGCTATGATGGGGGAAGCGCGAGGAGCTTCGTCTTCCTCTGGGAACACAC
GTGCTATCGCCGCCATCGTCTTTTGCCTGGAGGCCAGGCGCTCTTCTGCCGCTACTGCGACGACTCCATCCACGTCCAGG
GCATGCTCTCCGGCAACCATTGGCATCCGCGTTGACTTCAGCTCCGTTCGTAGCACCCACGCCGACAAAGTGTCTGTTCA
GTGGGTGGATGTGCATTACATATTGAATAAGAATCGTGGGGCTTCAAGCAATCTAGAATTATAGACTTGGGATTATCTTA
GGTTGCCGATTGTTGTACTGAAAATGTGTAATTATATATGGCACGTACATAAAAATGCAGCAATCTTGTCTTATAAAGTA
GGATTAAGAGGGATACTGAAGAAGTCAAGATGCAGAGTCTATTTTCCATGATTACTTCTCATGTTCATGTCGGCTTCCTT
GTGCTTTACTTCGTACCACCATATGCATTAAACTGGACCGTATCAAGAGATAACGCCATCCCCTTGATTAGAATTGCCTT
ATTTGTGCTATTTGATCAGTGTGTGTTTTACATATGACGTTGCTTTACCTGAAATTAAGGTGGGTTGCACCTGCCTATGC
ACTATCTCCAGGGATAGGTTGGAAATCAGAATATATGATTCATTCTTAGAGAAAACTTTACACACGTCACTTTAACATAA
TTGCATAGCAATCCAGTAAATTATGTAAGATTCAGTAGGAGGCAAGATATTGAAGATGTACTACTATTTCAGTTACATGA
TTCTATACATCTAAAACGGGTCACATGACTCCGTAACTATTGTTAGAGAATATCTCTCGCTGTTCTGTAAAGGTATGCAA
TCTCTACTGCGTTTCAATAAAGAGAATTTTACCATACAGAAGGATCCAATGAAGAAACTAATCCGGCTGAGTTCCAATAA
ATAGATCCTTCAAAGGATTTGTCCTAATACAACTGCCGTATATTGGTACAGAGAAATCATATAAACTGTACTTAGTCGGA
TTTATTTTGTTTCATGACAGAGAAACCAAATACTTTTTGCTATTTTGGCACATATATTTATTCTTATATACTTGTGCAGT
TTCGAATGATCCAACATATCTGCAGTCGTCAAACTTGAAGACATGCTGTTTAAGGCCTTATTTGCACCGCCTCTCTTTCT
TTGTCTGCACGCCTCTTTCCTCCAATAATAATAATGAAAAAACTTTTTCCGGATCAGGTATTACACTGTTACAAATATAT
GCTGAAGCTACTCCTTACGACAAGGAAAAAGAGGATGAATGCTTTCTATATTCACCAGTTTTGTAGCATGTTCCAAATTG
TTGGCTCTTTCTTATTTGAGGATTCATCATTTTTTTGTAATTTAGAAGCTGACCTGAAAGCTTGATAAGGTTAAGCTTGA
CAAATACTTTAGAATACTTTTCCTTCCATCTTTATTTTTCTTCATAACTCATTTCAGTTTCTATACGTACAAAACGTCTT
ACATCATTGTAAGTTAGTATGGTTGCCAATGCATAAACACATACAAAACCGGATAAATTTTTTCTATCATGATAATCATT
GGATTTCTTTTAGCCCTTTTACATTTCAATTAGTTCTTGTAAATCATCTTTATTTTATATAGAAGTCGTTGTAGTCACAT
ATCATCTTCTATTTCCTATTATCCATAGTAGGTAGCTATATAATTTTGGTAGTCCACACAACCAAAAAATATATATAATT
TGATCCAAATTAGTACAAATATATATTTTGCTATGCAGATTAGTAGAATAAAATAAGATTCGAGAATTAAGCATCTTGAA
TAATATAATTGCACCGTAAGGCAGTTTATACTTTTTTCCCTAGCTACACTCGAAGAGAAGACTATACTACATGCCTATAT
TATTGCATTAATAAATAATTGCTGATTTTATTTAAATGAGAATATTTTTATTACTCTATGCAGCAACATAACCACTATTG
TGTCTCGCTTTTGAAAATACAATTTGAGCGACATCAAACATTATGTATCCATTTGATTTATAATTTTAAAAATGTTTATT
TTTTTATATTATGTGAATTCACCTGTTTTACGATCGAGACGTGCGTTGCACGTGCATGATTACTAGTCTCATAGGGAAAG
TAATCGTCGACCACGCAAAAAAAAAGAGAGGAAAGTAATCGTCGAGCCGTAGTACCTACTTGAGCCA-----GGTATGTG
TTCCTCGACGGAAAGTACTCGTCACTGGAGCGAGAT---------------------AAAACGTGTGGTCCAGGCCA---
-------------------------TGTAACTGGGCCTCCTGCCCTGGTTGGGCTTGAAGGTGGAGCGCCTCTTTCCTGG
GCTCTCTCGCTGCTGTTATTGTTCGATGATGCAAATACAGAGGCGTGTTT----
>SNPs
----------S---------S-------S-------------------------------------------------S-
------------S---------SSSS---------S--------S-S---------------------------------
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S-S----S--------S--SS-S-SSS--------------------S------------S-------------------
---------------------------------------S---S---S--------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---
----------S----S--------------------------------S--------------------SS----S----
-----------S--------------------------SS---S-----------S------------------------
--S-----------------------------------------------------------------------------
-----------------------S----------S---------S----SSSSS-S--------S-----------S---
-S--------------------S------S------------------------S-------------------------
----------------S-------------------------------------------------------S-S-----
----SS-S------------------------------------------S-------------S----S----------
-----------------------S--------------S--------------------------S--------------
-----------------------------------------------------------S--------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------------------S----------------------------------------------------S---S--
-------------------------------------------------------S------------------------
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----S-----------------------------------------S---S----------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----------------S-S-
---------------------------------------------S----------------------------------
-----------------SSSSSS--S---S-------------------------S-----------------S-S----
--------------------S---------------S-------------------------------------------
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---------------------------------------------------------------------S----------
--------S---------------------------SSSSSSSSSSSSSSSSSSSSS----------S---S----SSSS
SSSSSSSSSSSSSSSSSSSSSSSSS----S--------------------------S-------------S---------
----S------------------------------------------S--SSSS
>forward_865
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---------------------------------------------GCTAGCTGAAGTGCCTCTCC---------------
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>reverse_5542
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---------------------CTCCTGTATCTGGGCCTCCT---------------------------------------
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