>input_sequence_84518
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-------------------------------------------ATGAAGATTAGGAAAGAAGGATATGTTCCTGATATGG
ATTATGTCCTTGTGCGTGTAGATGATCAAGAGAGGGAGACAAACTTACAGTACCACAGCAAGAAGATCGCGCTCGCATTT
GCACTGATCCAGATGCCTACAGGGGCAACAATTCGGATCATGAAGAATATTAGGATATGTGGGGATTGCCACTCTGCATT
CAAATACGTCTCCAAAGTTTTTAAAAGGGAGATTGTTGTGAGGGACACTAATAGATTTCACCATTTCAGTAATGGGTCTT
GTTCCTGTGGAGATTACTGGTGA---------------------------------------------------------
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--
>chr2D_1_TraesCS2D01G002900
CGCAGTCCAGGAACCTCGAGGATGCCAGCAGGAAAGTCCACGCTCACCTGGCCAGCTCACGGTTCGCGGGCGACGCCTTC
CTCGACAACTCACTCATTCACATGTAGTGCAAGGGCGGAAGCGTGCTCGAAGCGCAGAA---------CGAAATGCGGAG
GAAAGACATGGTTTCCTGGACCTCGCTCATCGCCGGGTACGCGCAGAACGACATGCCGGAGGAGGCCATTGCGCTGCTAC
CCAGCATGCTCAAGGGGAGCTTCAAGCCTAACGTACGGGTTCACGTTCGCCAGCGTCCTTAAGGCCGCTGGTGCTTACGC
GGACAGTGGCGTCGGGGGACAGATCCATGCTCTCGCCATGAAGTGTGATTGGAATGAGGATGTCTACGTTGGGAGCGCAC
TTGTTGACATGTACGCGCGGTGTGGGAGGAAGAACGGGGT--------------------------------------TT
CCCTGGAACGCTCTGATTTCTTGGTTTTCAAGGAAGGGCGACGGAGAAACAGCTTTAAAGGTGTTGGCCGAGATGCAAAG
AAATGGGTTTGAGGCGACACATTTTACTTACTCCAGCCTGTTCACTGCCATTGCTAGTTTAGGTGCTCTTGAGCAGGGGA
AGTGGGTGCATGCACATATGATTAAGTCTCGGCAGAAACTGACCGCGGTTCCTTGGGAACACAATTCTTGACATATATGT
ATGCAAAATCGGGGAGTATGGTTGACGCGAAAAAGGTGTTTGACCGTGTGGAGAGTAAAGATCTAGTTACTTGGAACTCC
GAAGC-------------------------------GAAGCAATCTCCCATTTTGAGGAGATGAGGAAATCCGGCATTTA
CCTGAATCAGGTCTCCTTCCTTTGCATTTTGACCGCCTGTACCCATGGAGGCCTGGTGAAGGAGGGAAAGCACTACTTTA
ACATGACGCAGGAGTATAATTTAGAGCCCGAGATTGACCATTATGTTACGGTTGTTGATCTATAAGCGGAAGAAGTAGGT
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-----AAGCGGAAGAGATATATAAGATGTGGGATGAGATAACCATGAAGATTAGGAAAGAAGGATATGTTCCTGATATGG
ATTATGTCCTTGTGCGTGTAGATGATCAAGAGAGGGAGACAAACTTACAGTACCACAGCAAGAAGATCGCGCTCGCATTT
GCACTGATCCAGATGCCTACAGGGGCAACAATTCGGATCATGAAGAATATTAGGATATGTGGGGATTGCCACTCTGCATT
CAAATACGTCTCCAAAGTTTTTAAAAGGGAGATTGTTGTGAGGGACACTAATAGATTTCACCATTTCAGTAATGGGTCTT
GTTCCTGTGGAGATTACTGGTGATTCTGCTAATATTTAGTGTGTTTATGAATCTACACGGCCATGGGTTGATTCAGTAAC
AGACAACAAGAACTTGTTCATGCAC------AGGTCGAGCCATATCTGCTTGATTTTC--TGTCGGCAGAACAAAC----
AGCATGCTGCAGCCCTCAAGATCATTCAGCATTCATTTCGTTCATGAGGGAGGGAGGGAAATTAAGAGCTACTCTTGAAG
ACATGTGCTTTCGCTCTTATAGCACAATCACTAAAATTTCGCAGGTTGCAGAAGCAGCATTATTGTGTGTGTGTGTGGCT
TATGGGTTTCTGAGAGGAACTTAGACCACCTGCATTTGGAGGTGCAATGTCCGAATAGAAGCATGCTTCGGATGTCTTTA
TTT--CAGGTAAAAATTCCCAACAATATATCTTGCGGATATTTGCAAATGATGGTGGGTTGAC----TTCCAAAACCTAA
TTACCACATCGGATGAATTCCACAGAGAAATAGTGTTAGGCGTAATTAATTCTAGAAATATAAGGCTGGGTGATTT-GCT
ACTTATGCACACTACCACCTCATACATTTCAGGTATCGCCCTCCGGCACTGACGACGGGTCTTCTGTAGTCACTTAATCA
TCGTTCTTTTGATCGGTGCTTTCACAAGTCCTCACAAACAGAAGGTATTATCCCTTTTGGGAGTCAGAAACTCTGAGAAT
CTGCATGGTTGTTGTACTCGGCTGAAGGAGGTGATTGTCCACCAAAAGAATGCAGTTCCGTACTTACCTACTTAATTACC
TTCCAGCCTTGATTTGTGCAGTTCAGCCTTGTACAAAAATATACGTACTCCACATAAGTGTTGGCTGTTCTTGGTCTGTT
GATGATAACAGGGAGGTTTTTACTTTGTCTTCAATCTCTTTCTGTCGCTATCTAGAACATATTAAATAGTTGTACTTGCT
CCACAGGAACAAGAGCCATTACTGAAATGTTGCCTGTTGAATCTAGATGGTTAGATTTAAGTCATGATTTTTTGATTTTG
TT
>chr5A_1
CGCAATCCAAGAACCTCGAGGATGCCAGGAAGA---TCCACGCGCACCTGGCCAGCTCCCGGTTCGCCGGCGACGCCTTC
CTCGACAACTCGCTCATCCACCTCTACTGCAAGTGCGGCAGCGTGCTGGAAGCGCGGAAGGTGTTCGACGGAATGCGGAG
GAAAGACATGGTCTCCTGGACCTCGCTCATTGCCGGGTACGCGCAGAACGACATGCCGGCGGTGGCCATCAGGCTGCTCC
CTGGCATGCTGAAGGGGCGCTTCAGGCCGAAC----GGGTTCACGTTCGCCAGCCTCCTCAAGGCTGCCGGCGCTTATGC
TGACAGTGGCATCGGGAGGCAGATCCATGCTCTTGCTGTGAAGTGTGACTGGCATGAGGACGTCTATGTTGGGAGCGCGC
TCCTCGACATGTATGCGCGGTGTGGGAAGATGGACATGGCCACCGCAGTGTTTGACAAACTTGACTCGAAGAATGGGGTT
TCTTGGAACGCATTGATCTCCGGGTTTGCGAGGAAGGGTGATGGAGAGACTGCTCTGATGACCTTTGCGGAGATGCTGAG
AAATGGGTTTGAAGCGACACATTTTACATACTCCAGTGTCTTCAGTTCTATCGCTCGTTTAGGTGCTCTTGAGCAGGGGA
AGTGGGTGCATGCACATGTGATTAAATCTCGGCAGAAACTGACTGCA-TTTGTTGGAAATACATTGCTTGACA----TGT
ATGCAAAATCAGGGAGCATGATTGACGCAAGAAAGGTGTTTGACCGTATGGACAATAAGGATCCAGTTACATGGAACACA
ATGCTCACAGCATTTGCACAATATGGACTGGGGAAGGAAGCAGTCTCCCATTTTGAGGAGATGAGGAAATCTGGCGTTTA
CCTGAATCAGATCACCTTCCTTTGCATTTTGACTGCCTGTAGCCATGGAGGACTGGTGAAGGAGGGCAAGCGCTACTTTG
AAATGATGAAGGAGTACGATTTAGAACCGGAGATTGATCATTATGTTACGGTTGTTGCTCTTATGGGCCGAGCTGGTTTC
CTAAATTATGCTCTGGTCTTTATATTTAAAATGCCCATGGAGCCAACTGCTGCAGTTTGGGGAGCCTTGCTTGCGGCATG
CAGAATGCATAAGAATGCTAAAGTAGGGCAATTTGCAGCTGATCATGTCTTTGAACTTGACCCAGATGATAGTGGTCCAC
CTGTCCTGTTGTATAACATATATGCTTCCACGGGCCAATGGGATGCTGCAGCCAGAGTGAGGAGGATGATGAAGACAACT
GGTGTGAAGAAGGAACCTGCATGCAGTTGGGTTGAGATGGAGAATTCTGTGCACATGTTTGTGGCAAATGATGATACCCA
TCCACGAGCGGAAGAGATATATAAGATGTGGGGTGAGATAAGCAAGAAGATTAGGAAAGAAGGATATGTTCCTGATATGG
ATTATGTGCTTCTGCGTGTAGATGACCAAGAGAGGGAGGCAAACCTACAGTACCACAGCGAGAAGCTCGCGCTTGCATTT
GCGCTGATCGAAATGCCTGCAGGGGCAACAATTCGCATCATGAAGAATATTAGGATATGTGGGGATTGCCACTCTGCTTT
CAAATACATCTCCAAAGTTTTTGGAAGGGAGATTGTTGTGAGGGACACAAATAGATTTCATCATTTCAGTAGTGGATCTT
GTTCCTGTGGAGATTACTGGTGATTCTGCCAAGATGTAGTGCGTTTATGAATCTACAAGGCCGTGGGTTGATTCAGTAAC
AGCCAACAGGAACCTTTTTATGGACTGATAAAGGGCAAACTATTTCTGCTTGATTGTCTCTGTTGACAGAGCAAACCGCA
AGCATGCTGCGGCCCTGAAGATCATTTGGCATCC------TTCATGAGGGATGG----------------ACTCCAGAAG
ACATGTGCTTTCATCCTTATAACGCAATCACTAAAATTTCGCAGGTTGCTAAAACAGCATCATTGTCTGCATGATTCCTG
GGACAAAAGTAG---------------ACCTCCATTTGGAGGCACGATCTCCGACTGGAAACACACTTCAGATGGCTTTA
TTTTCCAGGTAAACATTCCCAACAACCTATCTTGCTCATACGTGCAAATGAATGATAGTCTGCCGATTTCCGGAACCTAA
TTTCCGCACCTGATAAATTCCAGAGAGAGAACAATTTAGATATCCGTAGTTCTACAAGTGTAAGGCCGGGTGATTTTGCT
ACATATGCA-----------------------------------------------------------------------
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--
>chr5B_1
CGCAATCCAAGAACCTCGAGGATGCCAGGAAGA---TCCACGCGCACCTGGGCAGCTCCCGGTTCGCCGGCGACGCCTTC
CTCGACAACTCGCTCATCCACATGTACTGCAAGTGCCGCAGCGTGCTGGACGCGCGGAATGTGTTCGACCAAATGCGGAG
GAAAGACATGGTCTCCTGGACCTCGCTCATTGCCGGGTACGCGCAGAACGACATGCCGGTGGAGGCCATCGGGCTGCTCC
CTGGCATGCTGAAGGGGCGGTTCAAGCCAAAC----GGGTTCACGTTCGCCAGCCTCCTCAAGGCTGCCGGCGCTTATGC
TGACAGCGGCACCGGGAGGCAGATCCATGCTCTCGCTGTGAAGTGTGGTTGGCATGAGGACGTCTATGTTGGGAGCGCGC
TTCTCGACATGTATGCGCGGTGTGGGAAGATGGACATGGCCACCGCAGTGTTTGACAAACTTGACTCGAAGAATGGGGTT
TCCTGGAACGCATTGATCTCCGGGTTTGCAAGGAAGGGTGATGGAGAGTCTGCTCTGATGACCTTTGCAGAGATGCTGAG
AAATGGGTTTGAAGCGACACATTTTACATACTCCAGTGTCTTCAGTTCTATCGCTCGTTTAGGTGCTCTTGAGCAGGGGA
AGTGGGTGCATGCACATGTGATTAAATCTCGGCAGAAACTGACTGCA-TTTGTTGGAAATACATTGCTTGACA----TGT
ATGCAAAATCAGGGAGCATGATCGACGCGAGAAAGGTGTTTGACCGTGTGGATAATAAGGATCTAGTTACTTGGAACTCA
ATGCTCACAGCATTTGCACAATATGGGCTCGGGAAGGAAGCAGTTTCCCATTTTGAGGAGATGAGGAAGTCTGGCGTTTA
CCTGAATCAGATCACCTTCCTTTGCATTTTGACTGCCTGTAGCCATGGAGGACTGGTGAAGGAGGGCAAGCGCTACTTTG
AAATGATGAAGGAGTACGATTTAGAACCAGAGATTGATCATTATGTTACGGTTGTTGCTCTTCTCGGCCGAGCTGGTTTA
CTAAATTATGCTCTGGTCTTTATATTTAAAATGCCCATGGAGCCAACTGCTGCAGTTTGGGGAGCCTTGCTTGCGGCTTG
CAGAATGCATAAGAATGCTAAAGTAGGGCAATTTGCAGCTGATCATGTATTTGAACTTGACCCAGATGATAGTGGTCCAC
CTGTCTTGCTGTATAACATATATGCTTCCACAGGCCAATGGGATGCTGCAGCCAGAGTGAGGATGATGATGAAGACAACT
GGTGTGAAGAAGGAACCTGCATGCAGTTGGGTTGAGATGGAGAATTCTGTGCACATGTTTGTGGCAAATGATGATACCCA
TCCACAAGCGGAAGAGATATATAAGATGTGGGGTGAGATAAGCAAGAAGATTAGGAAAGAAGGATATGTTCCTGATATGG
ATTATGTGCTTCTGCATGTAGATGATCAAGAGAAGGAGGCAAACCTACAGTACCACAGCGAGAAGCTTGCGCTTGCATTT
GCACTGATCGAAATGCCTGCAGGGGCAACAATTCGTATCATGAAAAATATTAGGATATGTGGGGATTGCCACTCTGCATT
CAAATACATCTCCAAAGTTTTTGGAAGGGAGATTGTTGTGAGGGACACAAATAGATTTCATCATTTCAGTAGTGGATCTT
GTTCCTGTGGAGATTACTGGTGATTCTGCCAAGATGTAGTGCGTTTATAAATCTACAAGGCCATGGTTTGATTCAGTAAC
AGCCAACAGGAACCTTTTTATGGACTGATAAAGGGCAAAGTTTTTCTGCTTGATTGTCTCTGTTGACAGAGCAAACAGCA
CG-----TGCGGCCCTGAAGATCATTTGACATCC------TTCATGAGGGATGA----------------ACTCCAGAAG
ACATGCACTTTCATCCTTGTAGCGCAATCACTAAAATTTCGCAGGTTGCTAAAACAGCATCATTGTCTTCATGATTCCTG
GGAGAAAAGTAG---------------ACCTCCATTTGGAGGCACAATCTCCGACTGGAAACACACTTCAGATGGCTTTA
TTTTCCAGGTAAACATTCCCAACAACCTATCTTGCTCATACGTGCAAACGAATGATAGTCTGCGGATTTCCTGGACCTAA
TTTCCACACCGGATAAATTCCAGAGAGAGAACAATTTAGATATCCGTAATTCTACAAGTGCAAGGCTGGGTGATTTTGCT
ACATATGCA-----------------------------------------------------------------------
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--
>chr5D_1
CGCAATCCAAGAACCTCGAGGATGCCAGGAAGA---TCCACGCGCACCTGGCCAGCTCCCGTTTCGCGGGCGACGCCTTC
CTCGACAACTCGCTCATCCACCTCTACTGCAAGTGCGGCAGCGTGCTGGAAGCGCGGAAGGTGTTCGACGAAATGCGGAG
GAAAGACATGGTCTCCTGGACCTCGCTCATTGCCGGGTTCGCGCAGAACGACATGCCGGCGGAGGCCATCGGGCTGCTCC
CTGGCATGCTGAAGGGGCGCTTCAAGCCGAAC----GGGTTCACGTTCGCCAGCCTCCTCAAGGCTGCCGGCGCTTATGC
TGACAGCGGCATCGGGAGGCAGATCCATGCTCTCGCTGTGAAGTGTGGTTGGCATGAGGACGTCTATGTTGGGAGCGCGC
TTCTCGACATGTATGCGCGGTGTGGGAAGATGGACATGGCCACCGCAGTGTTTGACAAACTTGACTCGAAGAATGGGGTT
TCCTGGAACGCATTGATTTCCGGGTTTGCGAGGAAGGGTGATGGAGAGACTGCTCTGATGGCCTTTGCAGAGATGCTGAG
AAGTGGGTTTGAGGCGACACATTTTACATACTCCAGTGTCTTCAGTTCTATCGCTCGTTTAGGTGCTCTTGAGCAGGGGA
AGTGGGTGCATGCACATGTGATTAAGTCTCGGCAGAAACTGACTGCA-TTTGTTGGAAATACATTGCTTGACA----TGT
ATGCAAAATCAGGGAGCATGATCGATGCGAGAAAGGTGTTTGACCGTGTGGATAATAAGGATCTGGTTACTTGGAACACA
ATGCTCACAGCATTTGCACAATATGGACTGGGGAAGGAGGCAGTCTCCCATTTCGAGGAGATGAGGAAATCTGGCGTTTA
CCTGAATCAGATCACCTTCCTTTGCATTTTGACTGCCTGTAGCCATGGAGGACTGGTGAAGGAGGGCAAGCGTTACTTTG
AAATGATGAAGGAGTACGATTTAGAACCGGAGATTGATCATTATGTTACGGTTGTTGCTCTTCTCGGCCGAGCTGGTTTA
CTAAATTATGCTCTGGTCTTTATATTTAAAATGCCCATGGAGCCAACTGCTGCAGTTTGGGGAGCCTTGCTTGCGGCCTG
CAGAATGCATAGGAATGCTAAAGTAGGGCAATTTGCAGCTGATCATGTCTTTGAACTTGACCCAGATGATACTGGTCCAC
CTGTCCTGTTGTATAACATATATGCTTCCACGGGCCAATGGGATGCTGCTGCTAGAGTGAGGAGAATGATGAAGACAACT
GGTGTGAAGAAGGAACCTGCATGCAGTTGGGTTGAGTTAGAGAACTCTGTGCACATGTTTGTGGCAAATGATGATACTCA
TCCACGAGCGGAAGAGATATATAAGACGTGGGGTGAGATAAGCAAGAAGATTAGGAAAGAAGGATATGTTCCTGATATGG
ATTATGTGCTTCTGCGTGTAGATGATCAAGAGAGGGAGGCAAACCTACAGTACCACAGCGAGAAGCTCGCGCTTGCATTC
GCACTGATCGAAATGCCTGCAGGGGCAACAATTCGTATAATGAAGAATATTAGGATATGTGGGGATTGCCACTCTGCATT
CAAATACATCTCGAAAGCTTTTGGAAGGGAGGTTGTTGTGAGGGACACAAATAGATTTCACCATTTCAGTAATGGATCTT
GTTCCTGTGGAGATTACTGGTGATTCTGCCAAGCTGTAGTGCGTTTATGAATCTACAAGGCCAT----------------
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--
>SNPs
----S----S------------------S-S--SSS-------S--------------S---------------------
-----------S-----S--------S------S----S--------S-------S------------------------
------------S-----------------S----------------------------S---------S-S------S-
-SS-------S------S----------S---SSSS------------------S----S-----S--S--S-----S--
S---------S-----S-S-----------------SS--------------S-------S-----S-----------S-
--S-S--------S-------------S--S-S--SS--S----------------------------------------
S----------SS-------SS-----S----------S--S-----S--S---S-S-S--SS--S--S-------SS--
---------------------------S--------SS-S----S-S-S--S---S------------------------
-----------------S-------------------------S--SS--SS----S--S---S-S-------SSSS---
----------S-----S---S---------S---------------------S-S---S--------------------S
SSSSS-------------------------------------S----------------------------S---S----
----------S--S-------------------S-------S---------S--------------S----S-------S
-S----S-S-------SS-------S--S--------S-------------------S---SSSS-SSSS--SS-SSSSS
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--------------------------------S--------S--S-----------------------------------
-------S---S--------------------------S-----S--------------S-----S-------S------
---------S-S------S----------------S--------------------------------------------
-------S--------------SS------------------------S--------------------------S----
-----------------------------S--S--S-----S---------------S----------------------
--S-----S----S-S--S---S-----------S-S-S-S--S-----------S-------S-S----S---------
----------S-----S---------SS----S-SSSSSS-----------S--SSSSSSSSSSSSSSSS----SS----
------------SSS--------S-------------------------SS--S------S-----S--SS--SS-SSSS
SSS-SSSSSSS-SSSSSSSSSSSSSSS----S----------SS----S-----S-S---S--SS----S----S-----
-------------S-----------SS--------SS---SS---------SS-SSS--SSS---------SS-------
--S-----S-----S-------S-----S-SSSSS----SSS-SSS--------S--S-S--------------------
--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_274
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--------------GGGAGCTTCAAGCCTAACGT----------------------------------------------
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--
>reverse_2419
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------------------CGGCTGAAGGAGGTGATTGT------------------------------------------
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--
