>input_sequence_84515
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------------------ATGGCTAGGACAGTGGCGGTGTTGGTGTGGGTGCTGGTCATAGTGGTGGTGGTGGCGGGTGC
GATGGCGATAGAGCCACAGTGCCCCCCGAAAAAGCTTTTACCTTGCAATCCAGCGGTCAAGAAAGTTAAGGA---GCCCT
CGGCGTTGTGTTGCTCGAACCTCCGGGCGCAAGAAGGATGCCTCTGCCTATACTTGCACGATCCGAGGTACCAGCGCTAC
TTCGGGGGCGCCGACGCCGGCAAGACAATCACCTCCTGTGGCATCCCCCTTCCATATTGTTTATCAACTACAAATATATA
G-------------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G537400
GTAGGGGACAAAAATAATCCTCCTTTTTGAAAAAAGGTAAAAAAATATTACGCTGCTGGATAATCCTAGCTTGATTAACA
AGAAACAA-TGAATGTGGAAAAACTATGGTTGTGGGTGTTACGATGGACTACTTGAGATTTAGACATACCGAAAGGGTAA
GAAATAAATAAAAGAAAATAAAAA-AACATTATCAAGTGTTTTTCTCAGACACTCGACAAAGATGCATCATTACCAAATG
CTTTTCTTTTTCCGAGTGTAACACTAGGCAAACCTCGAGGCTATCTAGTGTCATTTTTTGCCAACTGTATTTTCAAAAGC
ACTCGACAATGACTATGTTTGCGGAATGCCCGTGGGAAGACATGCGGCACATGGCAAAGAAGCATTTTCCCGTAATATGC
AGCATTTGCAATACGCATCTTGCATTTT-CCATCTTCCCCTCTCTTTCTCGCAATCTAGGT--TCCTAAAAGAACATCGT
AGAAACATATAATGCGAAAAATAAATAGTGCTCATGTTCACGTTGAGGTC-TGTCTTTGTACATTCGGTGAAGTTTTATA
ATAGATCTGTTCCTTTTTCAAAAAGAAAATTATAGTCAACCAATCATAATTCTAGGTACTAGCTAGTCATCAATATAAAT
GCAGTCTAATTTGGCATTGTATAATTTCAGGGTCAAAACTGGTAC-----------------------------------
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TATATCAATAGCCAATTAATTATACATAATCAACCAATCCTATTTGCAGGTACTCACTTTTTTTTTGAGTAATGCAGGTG
CTCAGCTAAGCTAGTCATCCTTATCCAACTAACCAATTAATCGAAATGTAATTTGGCATATTATAATCCCAGGGCCAATA
CTGGTACCATATTTAATGGATGGAAAATACTGTATTTTTTTGGCGAAGGAGTAAAGGCTGCCTGAT--------------
---TATTAATCTGAGCGACGAGCTTGGCTTCACTTACCTTGCCATACAAACTTGAGAGGTTTTGTGTGTTTAGAGAGGAT
TTGCAGTCATCAAATATCATGGCTAGGACAGTGGCGGTGTTGGTGTGGGTGCTGGTCATAGTGGTGGTGGTGGCGGGTGC
GATGGCGATAGAGCCACAGTGCCCCCCGAAAAAGCTTTTACCTTGCAATCCAGCGGTCAAGAAAGTTAAGGA---GCCCT
CGGCGTTGTGTTGCTCGAACCTCCGGGCGCAAGAAGGATGCCTCTGCCTATACTTGCACGATCCGAGGTACCAGCGCTAC
TTCGGGGGCGCCGACGCCGGCAAGACAATCACCTCCTGTGGCATCCCCCTTCCATATTGTTTATCAACTACAAATATATA
GTGAACAATATGTGTTAATGTGCCTCTCTTTTGGAATAAATGGGAATTGTTACTCGAGAACATGCCCCTAGTTTGCTTTC
-TTAGTGTGTTGTCTTTTAATATATTTTTAAAGACAAAATTATATGTGAATCTAATCTACAAGGGATTTATCTTCTATAT
TGTTCATCTATTTTGTGGTTTGTGGGCACCCTTTGCCTTTGTGTTGACAAGGTTTTGGTATAGATTTGTGTTTTAGCCAC
TT------------------------------------------------------------------------------
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-------------------------------------------------------------------ATGTGTTGAGTGC
CACTGCTTTTAGGTACGTGACCATGGGACTT------------------------------CACGCAACAAAAATCACCC
CGGGCCCTCAAAG------------------AAAACAATTATGCATTTGGAGTTTCTTCTGGAAACATCTGATGATG-CT
TTATTCATCTCTGTCCTTGCTATTTTGCCCGTCTTGCTCACTAGTACTAACTATACTGTAT-----GAGCCCACCTCCTC
CCTCGACAGTGATGTGTCGAACTCCCTGTATCACCTGGACGGTGAAGCTCAAAGCCTCGCCTTGA-------CAATGGCC
CATCGAGCTTGCTTCCTCGCCAACGGTAAAGCCGTGCCGGTTTCACTTGTTTTTTTTTTTTTTTGATAAAGAACATTTCA
TTCAATTGATATATCAAGGTAATACAACTGCATTGAAAGAATACCTGACCTCTGCATAGCGCGATGCACACAACCAACAA
GTCCAACAAGTTTAAAAATTATATATCGTTTTACAACAAAAATAAATCAGTCAAGCCTAGGTGGGGAAAATCCTATCATG
AGATTACACCGTCATCCATTTTGGAAGAAAATATCCCTGGCCGTATGCTTCAGCGGTGTAGACATCATTATAAAAAGGTC
TTTGTCCCTCAGCCTTTGCAGGATAGGCCACGTATGGAGCCATCGTGTACACGCATGAATAACCTGCACAGGAGATGAAA
CACATTTATTGTTAAAAACCACATCATTCCTGGTAAACCACAATGCCCAACATAAGGCAGCCGCCCCCACGAGTAGATGT
GCAGAAAA
>chr2A_1
GTAAGGGACAGAAATAATCCTCCTTTTCGAAAAAAGG-AAAAAAATATTATGCTGCTGGATAATCCTAGCTTGATTAAGA
AGAAACAACTGAATGTGGAAAAACTATGGTTGTGGGTGTTACGATGGACTACTTGAGATTTAGACATACTGAAAGGGTAA
GAAATAAATAAAAGGAAATAAAAACAACTTTATCAAGTGTTTTTGTCAGACACTCGACAAAGATGCATCATTACCAAGCG
CTTTTCTTTTTCCGAGTGTAACACTAGGCAAACCTCGAGACTATCTAGTGTCATTTTTTGCCAACTATATTTTCAAAAGC
ACTCGACAATGACTATGTTTGCCGAATGCCCGTGGGAAGACATGCAGCACATGGCAAAGAAGCATTTTCCCGTGGTGTGC
AGCATTTGCAATACGCATCTTGCATTTTTCCATCTTCCCCTCTCTTTCTCGCAATATAGGTATTCCTAAAAGAACATCGT
AGAAACATATAATGCAAAAAATAAATACTGCCCAAGTTCACGTTGAGGTC-TGTCTTTGTATGTTCGATGAAGTTTTATA
ATAGATTAGATCCTTTTCCAAAAAGAAAATTATAGCCAACCAATCA---TTCTAGGTATTAGCTAGTCATCAATATCAAT
GCAGTCTAATTTGGCATGGTATAATTTCAGGGTCAAAATTGGTAC-----------------------------------
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TATACTAATAGCCAGTTAATTATACATTACCGACCAATCCTAATTACACGTACTCAATTTTTTT---AGTAATGTAGGTA
CTCAGCTAAGCTAGTCATCCTTATCCAAGGAGACAATTAATCGAAATGTAATTTGGCATAGTATAATCGCAGGGCCAAAA
TTGGTACCATATTTAATGGATGAAAAATAATGTA-TTTTTTGGTGAAGGAGTAAACACTGCCTGCAAATGCCTCGGCCCT
AACTATAAATCTGAGCGACGCGCTTCACTTCACTTACCTTGCCACACAAACTTGAGAGACTTTGAG--TTTAGAGAGGAG
TTGCAGTCGTCAAAGATCATGGCTAGGACAGTGGCGGTGTTGGTGTGAGTGTTGGTCATAGTGGTGGTGGCGGCGGGTGC
GATGGCGACAAAGCCACGGTGCCCCCCGAAAAAGCTTTTACCTTGCAATCCAGCGATCAAGAAAGATAAGGA---GCCCT
CAGTGTTGTGTTGCTCGAACCTCCGGGCGCAAGAAGAGTGCCTCTGTCTGTACTTGCACGATCCCAGGTACTAGCGCTAC
TTTGGGGTCGCCGACACCGGCAAGACAATCACCTCCTGCGGCATCCCCCTTCCATATTGTTTATCAACTATAAATATATA
GTGAACAATATGTGTTAATGTACCTCTCTTTTGGAACAATATG-------------------------------------
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>chr2D_1
GTAGGGGACAAAAATAATCCTCCTTTTTTAAAAAAGG-AAAAAAA---TACGCCACTGGATAATCCTAGCTTGATTAACA
AGAAAAAACTGAATGAGG-AAAACTATGGCTGTGGGTGTTACGAAGGGCTACTTGAGATTTAGACATACC-AAATGGTAA
GAAATAAATAAAAGGAAATAAAAA-AA--TTATCAAGTGTTTTTCTCGGACACTTGACAAAGATGCATCATTACCAAGTG
CTTTTGTTTTGCCGAGTGTAACACTAGGCAAACCGCGAGACTATCTAGTGCCATTTTTCGCCAAGTGTATTTTCAAAAGC
ACTCGACAATGACCATGTTTGCCGAATGCCAGTGGGAAGACATGCGGCACATGGCAAAGAAGCATTTTCCCATAGTGTGC
AGCATTTGCAATACGTATCTTGCATTTT-CCATCTACCCCTCTCTTTCTCTCAATCTAGGTATTCCTAAAAGAACGAGGT
AGAAACATATAATGCCAAAAAAAAGGA-TGCCCATGTGGACTTCAAGGTCTTGTCTTTGTACTTTCGCTGAAATTTCATA
ATAGATCTTATCCTTTTCAAAAAAGAAAATTGTAGCCAACCAATCGTAATTATAGGTAC----TAGTCATCAA-------
----TCTAATTTGGCATGGTATAATGTCAGGGTCAAAATTGGTACTCCCTCCGTCCGGAAATACTTGTCGGAAAAATGGA
TAAAAATGAATGTATCTAAAACTAAAATACGTCTAGATACACCCATTCCTCCGACAAGTATTTTCGGACGGAGGGAGTAC
TATATTAGTAGCCAATAATT------------------------------------------------------------
-----------------------------------ATTAATCGAAATGTAATTTGGCATAGTATAATCGCAGGGCCAAAA
TTGGTACCATATTTAATGGATGAAAAACACTGTA-TCTTTTGGTGAAGGAGTAAACACTGCCTGCAAATGCCTCGGCCCT
GACTATAAATCTGAGCGACGCGCTTCGCTTCACTTACCTTGCCATACAAACTTGAGAGGCTTTGTG--TTTAGAGAGGAG
TTGCCGTTGTTAAAGATTATGGCTAGGACAACGGCGGTGTCGGTGTGGGCGCTGGTCATAGCGGTGGTGGTGGCGGGTGC
GATGGCGACAGATCCACGGTGCCCCCCGAAAAAGCTTTTACCTTGCAATCCAGAGGTCAAGGAAGGTAAGGAGGAGCCCT
CGGCGTTGTGTTGCTCGAACCTCCGGGCGCAAGAAGGGTGCCTCTGCCTGTACTTGCACGATCCGAGCTACCAGCGCTAC
TTCGGGGGCGCCGAACCCCGCAAGACAATCACCTCCTGTGGCATCCCCATTCCATATTGTTTATCAACTACAAATATATA
GTGAACAATATGTGTTAATGTGCCTCTCTTTTGGAATAAATGGGAATTGTTACTCGAGAACATGCCCCTAGTTTGCTTTT
TTTAGTCTGTTGTCTTTTAAAT---------AGGCAAAATTATATGTAAATCTAC---ACAAAGGATTTTTCGTCTACAT
TGTTCATCTATTTTGTGGTTTGTGGGTACCCTTTTCCTTTGTGTTGACACGGATTTGGTATAGGTTTATGTTTTACTTTA
GACATTTACTAGCACATATGTCCGTGCATTGCAAGGAAATTTTTTAATGTTTTGTGCAAGCATAATGTCTCATACTATCT
CAAACAAAATCTCATAGCACCGGATTCACTACGAAGAACATGTTGCAACGCAACATCCTTCTACAAAATGAACATAAAAA
ATAGGATGCAATTTGGCCGCGTTCGTATTTTCTCTGCCGGGCATAATCTTCCACTGATTCCATTTAAGTATAATCCTTAA
ATTAATTACCATGACGTCCTCACCGTTTTAGTCGGGAATCTCCTTCGTTTTCTTTTTGAAAGCAAATCCTCCCTTTTCTG
ATTTAGTAGCCCCACCACATTGAAGCCTACGGATCCATCCTTTTAATTATCCTACCTTTTTACCTCAAATCCTTCCTTTA
ATTAGCCCCATCAATTTGAATATATTCTATTTATTAAGCCCACAATCTTTCTTTTAATTATTCCATCGGTTTACCCATAA
TCCTTTCTTTAATTAGTCACATCCGTTTAAATATTCTATCTAAGCCCACAATCCTTTCTTTAATTAGCTCATTCGCTTAA
TTAGCTCGCCCTAAATATGAGGTCTGCTCTTCTTTGTTTTAACCGTCTATTGGTTGATTCCTAAGCCGCTCAAATATTTA
CTGATCGGAACCATTGCAAAAGAGCGAGGTGGGATTAATAAACGTGAAAGATGCAGAGCTCGTTGGTTGTTACGTCGAAG
AGCCAGACAGGAGGTCCTCTGTTCAATTCCCACAATGTTGATTTATTTTGACCCAATTGTTTTTCGTAGTCTCTATGGAA
GCCCATAGCAGGCCCATCAACGTAAACGTACTTGGCCCAGATGGCTTAGCGTACAAAAAACATTAGCGTGCGTCAAACCA
AACAAAAATCAAATGAAAAGGACTAAACAAAACCGATAATATCTATTACCTTTAATAGTAGGTATAGATGTGTTGAGTGC
CACTGCTCTTAAGCACGTGACCGTGGGCAGCATCACCTCCAAGAGGCAACATACATATGCACATGCACAAAAAATCAGGG
GGAGCCCTCCACCCCCCTCACAGCCGAAAATAAAATAATTTTGCATTTGGAGTTTCTTCTGGAAACATCCGATGTTGCCT
TTATTCATCTCTATCCTTGCCATTTTGCCCGTCCTTG-------------------------------------------
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>chr2D_1695
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------------------------------GTCCTGCTCACTACTAACTACTCCACTGTACTGTCCGAGCCCACCTCCTC
CCTCGACAGTGATGTGTCGAACTCCCTGTATCACCTAGACAGTGAAGCTCAAAGCCTCGCCTCCTTTCATGGCAATGGCC
CATCGAGCTTGCTTCCTCGCCAACGGTAAGGCCGTGTCGGTTTCACTTGTTTTTTTCGATAAAAAT--------ATTTCA
TTCAATTTTTATATCAAGGTAATACAACTGCATTGAAAAAATGCCCAGCCTCTGCATAGCGCAATGCACACAGCCAACAA
GTCCAACAAGCCT-AAAAGTATATATCGTTTTACAATAAAAGTAAATCAGTCAAGCCTAGGTGGGAAAAATCCTATCACG
AGATTAGACCGCCATCCATGTTGGGAGAAAATATCCCTGGCTGTATGCTCCAGCCGTGTAGACGTCATCATAAAAAGGTC
TCTGTCCCTCGGCCTTTGCAGGATAGGCCACGTACAGAGTCATCGCGTACACGCATGAATAACCTGCACAAGAGATGAAA
CACATTTATTGTTAAAAATCACATCATTCCTAATAAGCCACAATGCCCAAGATAAGGCAGACGCCCCCACGAGTAGATGT
GCAGAAAA
>SNPs
-------------------------------------S------------------------------------------
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--------------S-------------S------------------------------------------------S--
---------------------------------------S----------------------------------------
----------------------S---------------------------------------------------S-S---
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---------------S-----------S---S------------------------------S----S------------
---------S-------S-----------------S----------------------------------------S---
-----------------S--------------------S-----------------------------------------
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-----S---------------------S-S-S----------S--S--S-------S-------SSS-------S----S
----------------------------SS-SS---------------------------S-------S---------S-
S---------------------S-----------S--------S-----------SS-------SS--------------
------S-------------S----S---------------------------------S------SS-----------S
--------S-----S-----------------------------------------------------------------
--------S--------S-----------------------------------------------S--------------
-------------------------------------S-----------S------------------------------
---------------S----------------------------------------------------------------
-------------------------------------------------------------------------------S
------S-------------SSSSSSSSSSS--S-------------S------SSSS----S------S--S----S--
--------------------------S-------S--------------S--S----------S---S-------SSSSS
SS------------------------------------------------------------------------------
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-------S---S-S--------S----SSSS--------------------------------S---SS--------SSS
S-S------S-SS----------------------S----S----------------------------S----S-----
------------S-------S------------S---------S--SSS---SS------S-------------------
------------------------------------S---S---------------------SSS---------------
-----------------------------S------S-------------------SSS-SSSSSSSSSSSSSS------
-------SS-----------------------------S---S--SSS--------------S---------S-------
----------SS-S----S-----------------S----S-----------------------S------------S-
------S----S-------S----S----------------S-------S----S--------S----S-----------
-S--------S-----------------------SS---S-----S------------------------S---------
------------------S------------SS---S-------------S---------S-------------------
--------
>forward_280
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--------------------ACACTAGGCAAACCTCGAGG----------------------------------------
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>reverse_3282
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-TTGTCCCTCAGCCTTTGCAG-----------------------------------------------------------
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