>input_sequence_84503
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ATGGCGAGGTTCCGGTTCCACTGGCTGGAGGCCATGCTGCCGCTGGGCATCATCGGCGGCTTCC
TCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAGGGTA---CCGCTCCCTTTCCCCATTTCT
CTCTCTCCCCCGAATCCCGATCCGAGTCTCTCTCTCTTCTCGTTCTGACGCGGGCGTGTGGTTCGTTGGATGCAGCCGAA
GCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAGCTCGTCGACAAGCCCGCCGCCAACTAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr1B_1_TraesCS1B01G313200
TTTACGTGTTGGAGCAGTAGTAGTACGCTATCCTTTCAGGGAGGGACAAACACTCTGATGTGTAAATTGTGGTGTGGGCG
GTCAGCCTCGTACTACTACGATGGGAAAAGAAAATAAGCAGAAAAAGAAACTACTACTACAGGATCCCGCGAGGGCATAC
GGAAGATAC----GCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGGAAAGGGCTCCCGGCCCGAGACAAAAGCG
CCATCTCCATCCGTCTCGCACGTCCCCGCCCGGTCTAGCTTTCCATGCTCGCTCTTGCTTCGTGCAAAGCAGCAATATTT
TGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCACCCCTCCTCCTTTT-CCATGATCCTGTTTAGT
GTAAA--AGAACGCTGGAGTAGTGGAGTGGTTCCAAGTTCCAACTTGCAACCCTTCCGGGATTCCATGAGCTGATGAGCA
CGACCACCGCA-CTGCCCAACTCCAGTTGACATTCTACGGAGTGGCCAACAACATTTTGCATAAAATTGTATTTCCTCCG
TAAACTAATATAAGGGCATTTAGATCCTCTTGTATGATTATTTTCATAGCTTTTAGTGTGAAATTATTAAAATATTTAGA
TTTTTTTAGCGGAAAACACATTCATATTTCCC---------------------TCTATGACGCCATTAGCCCCAACCCAT
TTCCAACTGAAGGAAACCCTGACCCATTTTCAACTGAAGAAAACCCTGACCCATTTTCATTCGCAAAAAAGAAACCCTTA
CCCGTTTTCGTAA--AAAAAAAAACTCGGTCAAGGATCCAATTTCTGGTTCGCCGAAGCCGGAAAGCCCGGCCCACGCAA
CTGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCCGCCCGTTCGCCGTCGCGACCTCAGTTCCCCACCCGCAACC
GCTAGATAGCTCGCGAATCTGCTCCTCGTCGCCGT---------CCCCGAT----------------CCGTCCGTCGTCT
CCCCGTACGGCCCCCGATGGCGAGGTTCCGGTTCCACTGGCTGGAGGCCATGCTGCCGCTGGGCATCATCGGCGGCTTCC
TCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAGGGTA---CCGCTCCCTTTCCCCATTTCT
CTCTCTCCCCCGAATCCCGATCCGAGTCTCTCTCTCTTCTCGTTCTGACGCGGGCGTGTGGTTCGTTGGATGCAGCCGAA
GCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAGCTCGTCGACAAGCCCGCCGCCAACTAGG
TGCGGATCTGATCCCA----------------TGCCTCCTGCATCTTCTGCCGGCGGCCCCTCTTGGGTTTCTGGGTGCT
TGGCTCTGAGACGAAATTCTAGGGTTTGGTCTGGTGTTAAGTTTGAATAGTTCCCTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTCTGGTGTGAATTTGCGCATTTATCCGTAGCTGGATTGTCATG
-TTGATTGTTAGTGCGTTGCAGATCACTGGAGACTTTTCTGATGCTGCTGCGCT------GCTGTTATGC-TTGACAGAA
TTGGATTGCAATGTGCTAGACTTGTACTGAATTTCTGATTTGGTTGGTACTGTATGGTAGCCCCATTTGCCCTGTCGAAC
TGATGGTACAGCTCGGGTTTTGCGTC-ATTTGAATGTAAGGCTAGTTTAGAAAATAGTATAGCACAGTGAGCTCCTTTGC
AATGAGGTAAATGTCATCTGATTGGGTCTTTGAGGTGGGAGAAGTGGTACTTCGGGCTTGGCAGAGCTTCCTCTGGCCGT
GTTCTCCAGTCGTCACAGTAGAGAATT-AAACTGACTGCTTCTGTTTCCCAACTTGATTTATATAATTTTTTGAAGAATG
TTGATCTAAGCAATTGCATTTATCTAAGTAGACCTCTCTCCAGTCTCACGTGAATCCCTATTGGCTGGCCGAAGAATGGA
AACCATGATTTGTTTACA--CCTCTAGCAGACTTCT-ACGTGGCCTTAATGTCACATTGTTCCCTATTTTTCCTTTCATG
ATCTTGTTAATGCCCCATCCATTCTTGTTTCCCTCAATAGTATTGCCATTCCCATGCATCTGATCACT
>chr1D_80
-------------------------------------------------------------------------------G
GTCAGCCTCGTACTACTACGATGGGAAAATAAAATGAGGAGAAA---AAACTACTACTACAGGATCCCGCGATGGCATAC
CGAAGATAC----GCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGAAAAGGGCTCCCGGCCCGAGACAAAGGCG
CCATCTCCATCCATCTCGCACGTCCCCGCCCGGTCTAGCTTTCCATGCTCGCTCTTGCTTCGTGCAAAGTAGCAATATTT
TGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCTCCCCTCCTCCTTTTCCCATGATCCTGTTTAGT
GTAAA--AGAACACTGGAGTAGTGGAGTAGTTCCAAGTTCCAACTTGTAGCCCTTCCGGGATTCCATGAGCTGATGAGCA
CGACCATCGCA-CTGCCCAACTCCAGTTGACATTCTTGGGAGTGGGCGTCAACATTACATACAAATTGTA----------
----------------------------CTTGTAGGATTATCTTCATAACTTTTAGTGTGAAATTATGAAAACACTTAAG
ATTTTTTAGCCGAAAACATATTCAGATTTTTTTGAGGAGTATTCAGATTTTCTTCTGTGACG--------------CCAT
TTTCAATTGGAGGAAACCCTGACCCATTCGTAA-----------------------------------------------
-------TCGTAAAGAAAAAAAAACACGGTCAAGGATCCAATTTCTGGACCGCCGTAGCCGGAAAGCCCGGCCCATGCAA
CCGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCCGCCCGTTC-------------------CCCACCCGGAACC
GCTGGAGAGCTCGCGAATCTGCTCGTCGTCGCCATCCCCGCCCGCCCCGAT----------------CCGTCCGCCGTCT
CCCCGTCCGGCTCCCGATGGCGAGGTTCCGGTTGCACTGGCTGGAGGCCATGCTGCCGCTGGGCATCATCGGCGGCTTCC
TCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAGGGTAACGCCGCTCCCTTTCCCCATTTCC
--CTCTCCCCCGAATCCCGATCCGAATCTCTCTC-------GTGCTGAGGCGGGCGTGTGGTTTGTTGGATGCAGCCGAA
GCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAGCTCGTCGACAAGCCCGCCGCCAACTAGG
TGCGGATCCGATCCCA----------------TGCCGCCGCT----------------CCCTCTTGGGTTTCTGGGGTCT
CGGCTCTGTGATGAACTTCTAGGGTTTGGACCGCTGTTGGGTTAGAATAGATCCCT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr1A_111
--------------------------------------------------------------------------------
------------------------------AAAATGAGCAGAAA---AAAC--CTACTACAGGATCCCGCGAGGGCATAC
GGAAGATACGCTTGCCCACGCACCTTGTTGTCACAGCCCGGTGGCGGTGGGGAAAGGGCTCCCGGCCCGAGACAAAAGCG
CCATCTCCATCCATCTCGCACGTCCCCGCCCGGCCTAGCTTTCCATGCTCGCTCTTGCTTCGTGCAAAGCAGCAATATTT
TGGGGGCTTTCGGCACGGATCCAGGAGCCCTTGTCACCCACAGTATCCCTCTTCCTCCTTTTTCCATGATCCCGTTTAGT
GTAAAAAAGAACACTGGAGTAGTGGAGTGGTTCCAAGTTCCAACTTGCAGCCCTTCCGGGATTCCATGAGCTGATGAGCA
CGACCAACGCACCTCCCAAACTCCAGTTAGCATTTTTTGGAGTGGCCAACAACATTTTATACAAATTCTA----------
-----------------------------TTATATAATTATTTCATATTTTATA----------TATGAAAATATTTACA
TTTTCGTAGCGGAAAACACATTCATATTTC--------------------TCTTCTATGACGCCATTAGCCCAAACCCAT
TTTCAATTGGATAAGACCC-------------------------------------------------------------
-CCATTTTCGTAAAGAAAAAAAAACTCGGTCAAGGATCCAGTTTCTGGACCGCCGAAGCCGGAAAGCCCGGCCCATGCAA
CCGGCCCAACGTTCTCCACTCACAGACCAAGTCCAGAGCTGCCCATTC-------------------CCCACCCGCAACC
GCTGGAGAGCTCGCGAATCTGCTCCTCGTCGCCGT---------CCCTGCCCGCCCCGATCCGTCCGCCGTCCGCCGTCT
CCCCGTCCGGCTCCCGATGGCGCGGTTCCGGTTGCACTGGCTGGAGGCCATGCTGCCGCTGGGCATCATCGGCGGCTTCC
TCTGCATCATGGGCAACGGCCAGTACTACATCCACAGGGCCGCGCACGGCAGGGTA---CC-CTCCCTTCCCCCA--TCT
CTCTCTCCCCCGAATCCCGATCCGAATCTCTCTC-------GTGCTGAGGCTTGCGCGTGGTTTGTTGGATGCAGCCGAA
GCACATCGGGAACGACATGTGGGACGTCGCCATGGAGCGCCGTGACAAGAAGCTCGTCGACAAGCCCGCCGCCAACTAGG
TGCGGATCTGATCCCACGCCTTCTGAATCTCCTGCCGGTGGC----------------CCCTATCAGGTTTCTGGGGGCC
TGGCTCTGACGTGAAATTCTAGGGTTTGGGCTGGTGTTAAGTTAGAGTAGTTCCCTTCTGTTGTTGGATACGAGGTGTTT
ATGTGGGGGGTTACAAATTGGG----------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AGTGCCTGGTGGGAATTTGCGCATTTCTCCGTAGCTGGGTTGCCCTG
TTTGATTGGTAGTGCGTTGCAGATCACTGGAGACTTCGTGATACTTGATTGTCATGTTTGGCTGTTATGCTTTGACTGAA
TTGGATTGCAGTGTGCTAGACTTGTACTGAATTTCTGATTTAGTTGTTACTC----GTAGCCCCATTTTCGCTATCAAAG
TGATGGTGCAGCTTGGGGTCTTGTGGTATTTGAATGTAAGGCTAGTTTAGAAGATGATAGAGCAC-------------GC
AATGAGGTAAATGCCAACTGGTTGGGTCTTTGAGGTGGGAGAAGTGTTACTTCGGGGTTGGCAGCGCTTCCTCTGGTCGT
CTTCTCAAGTCATCGCAGTGGAAAATAAAAACTGACTACTTCTGTTTCACAGCTTGCTTTGCCTAGTCTTTTGAAGAATG
GTGATCTAGGAACTA-CATTTATCTAAGTAGT-CTCTCTCCAGTCTCCTGTGAATACATGTAGGCTGGCCCCAGAATGGA
AACCATGATTGTTTTTACACCCTCTAGCAGACTTGCAACGTGATCTTCATGTTACATTGTTCCCTATTTT-CCTTTCATT
ATCTTGTGATTGCCCGGTCCATTCTTGTCTTCCTCAATTGTATTATCCTTCCCGTGCATTCGATCACT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----------------------------S-----S--------SSS---------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
-----------------------------------------------S--------------------------------
------------S------------------------------------S------------------------------
------S-----------------------------SS--------------------SS-S---S-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S------------------S----------S-
------------------------------SS----------------------------------------S-------
--S---S--S------------------SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--S--------------------------------------------SS-------------------------S----
-S----------------------------------------------SSSSSSSSSSSSSSSSSSS-------------
---S--S-------------------------------------------------------------------S-----
------S----S---------------------S----------------------------------------------
--------------------------------------------------------------------------------
-------------------------S--------SSSSSSS--S----S--------------S----------------
--------------------------------------------------------------------------------
------------------------------------S--S--SSSSSSSSSSSSSSSS------------------S---
-----------S-----------------S-------------S-------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------S--------------S-----------S---S-S--
--------S---------------------------SSSSSSSSS--S-SSS-S----------------------S---
----------S------------------------------S----S----SSSSS------------S-S--S--S--S
-------S-----S---S-S-SSSSS--------------------------S--SS--S-----SSSSSSSSSSSSS--
-------------S--S---S-------------------------S---------S-------S-----------S---
S-----S----S--S----S--S---S----------S----------S--S----S---SSS--S-S------------
S-------S-S-S-SS---------------SS--------------SS------S-S-S-S--------SS--------
----------SS---SSS----------------SS------SS---S----S-----------------S--------S
-------S-S-----SS-----------S-S-------S-----SS-S-----S-----SS-------
>forward_45
-------------------------CGCTATCCTTTCAGGGAGGG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_1437
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TGCT
TGGCTCTGAGACGAAA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
