>input_sequence_84495
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--------------------------------------------------------------------------ATGGCA
TCCCTGAAGGCCGTGAAGCCAACCGGACTTGAAGGGCAGGCCAAGGAGCCTACCAAGGTTAGTGCCGCCAAGGGGCCTGC
GAAGCTCAGTGCCACGGCGACCAAGCCAGCAGCCGCCAAGGGTGGCATCAAGAAGGCCGAGTCAAAGCCACGGGAGCCTA
AGAAGAGGGTACAACCTGCAGCTGATGTCATATTGAGATCCTT-ATAACCTTCACCTTGCATGCTCTTTCCCTGATGAT-
-GGTG-TTTTTCAAATGACAGCAGGTGAAGAGCTCCAAGCCAGCAGCAGCAAAAAACTGA--------------------
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>chr3A_1_TraesCS3A01G231100
TAGTTGCAGTTTTATTTTTAGAAGTAGAACATCGAATGTTGATGCGCATAATCTAGCCAAACATTCCCTTTTGCTTGATC
AGGGCCAAACATTCCCTTTTGCTTGATCAGGGTCATCACTTGTGGCTCATTTCTCCGCATG------TACGCATCCCTCT
TAATGTTCAAATGAATCAATCAAGTGTTGGCACCTCTCAACAACAACAACAAAAAACAGTCCCTCAACAGAAACAAGTAC
TCCCTCCGTTCGGAATTACTTGTCTCAGAAATGGATGCATCTAGAACTAAAATACGTCTAGATACATCCATTTCTGCGAC
AAGTAATTCCGAACGGAGGGAGTACAAAACAGAGTACAAGGAGGCACTCACTAATACAATCTCCTAAAAAA---------
----CTACTCCCACTATCCCATAACATA----------------------AGACGTCTTTTAGTGTTAAAAAAGTCTT--
------------------------------------------------------GCATTATGGGACGGAGGGAGTACGAA
ACAGAGTACAAGCCATCCTTCTCAAG------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------GACACATGCAACTAAACTATTACAAATCCCATAGAATCAGC----AAAAA
ACAAAAAAGACGTCATGGCAATTTGCCAAACGCAACACAAGCTATAGCCGAGTCCCCTACGTCGGAGGGG--GAGATCAT
CCAGACACCAACAGAAACCAGGCAGCAAACCTTCTTGTACAAGATTTTATCTTTCGGAAGCTTCCTGGTGCCATTGTGCG
TTAATGACTCAGGGAATAATATACCTCAAACATTTCGAATGGAAAACTTCACGTCCGGTAAGTTGCACCTCCTACCAGGC
TACAAGGCATCCAATTCTGTAAGAAAGCATCCAACTGCACCGTGCCATCAATCACTTGCTACAATAATTCAGGACGCCTT
TATTCTTGCTTCATGTAGGATTTGTACTCTGCACACTTGGGAGACCCAAGAAGCGGCCTATAAATACCTTGGTCCATCCA
TTCCCCAGTTCATCAAGCACACGACAG-------TTCTAAGCCTTCCAGTGCCGGAACAGAGCAGCATATAAGAATGGCA
TCCCTGAAGGCCGTGAAGCCAACCGGACTTGAAGGGCAGGCCAAGGAGCCTACCAAGGTTAGTGCCGCCAAGGGGCCTGC
GAAGCTCAGTGCCACGGCGACCAAGCCAGCAGCCGCCAAGGGTGGCATCAAGAAGGCCGAGTCAAAGCCACGGGAGCCTA
AGAAGAGGGTACAACCTGCAGCTGATGTCATATTGAGATCCTT-ATAACCTTCACCTTGCATGCTCTTTCCCTGATGAT-
-GGTG-TTTTTCAAATGACAGCAGGTGAAGAGCTCCAAGCCAGCAGCAGCAAAAAACTGACAACGGCAGCAGAAGAAATG
GAGCTTGCAT-GCTATCTTCATGGTGCTATGAATTATATATGAATCCCGCCTTTCCCTTCCTCTGTCTCCCATGATGTCG
ATCATGCCTCGACAGGCGCTGACAGTGTGTGCGCAATCCATGTGACGAATATTACAAATAAGACGTGTAGTTCTGCCATC
TGCTTCATCTTATCCTGCTTGATGTTTCACTGCTTTCTCCCATTTTACGTGTGTTTGTTTGGCTTTGATTGGCAAATACA
ATAACACAAACACCAATCACCCGAGACCCTAAGAATCATCATCTCTGTGGTGTCGTCTG-AAAAAAAAGAAGCAAAACCC
ATTATGCCAACGATAATAGGAGTACATGACAAACGATTATCATGATCCTACACAACCGCAATCATCAAACAAACAGAAAT
TTCAGGACACAGAACTGTTACAAAATCACACAACCAATCACCATAAACGCTGATGATGTCTCAAAAAGTAACACTACGTG
AATGACCAGCCACACTTACCCAAAAATTAGAAGAACACACACTTGGTAA-TTATGAACAGAAAAGTCAAAGGTGGGCACT
TCTGAAATTATCCTGGCGCATTTAGAAACAACAAAAAAACTTCCTCAATCAACTTTTATATTACCTATACAGTGACTTCC
TAGTTTT-TGTTCGATACAAATTAGAACATTG-------CAGAACCCATGATTACAAGCCCTTGTGAGTGATATAAAGTA
CACCTCATCTACAAGTTCAAAAACAGAAGGGGTAAAAGAAGGCGTTGTTTCGACTCATGTAGGTTCCTCCTTAAAC---G
GATAGCAGGTAAAGAAGTGTACAGGCCAACATGCCAGGAAAGTGCACACCAACAAAGTTGATACATTTTGGAACGTTCAT
TTTTCTGTCGTATACTCCCTCCGTTCGGAATTACTTGTCGTAGAAATCGATGTATCTAGATGTAATTTAGTTCTAGATAC
ATCCATTTCTGAGACAAGTAATTCCGAACGGAGG
>chr3D_1
TAGTTGCAGTTTTATTTTTAAAAGTAGAACATCGAATGTTGATGCGCATAATCTAGCCAAACACTCCCTTTTGCTTGATC
----------------------------AGGTTCATCACTTGTGGCTCATTTCTCCGCATGACCCAGTACGCATCCCTCT
TAATGCTCAAATGAATCAATCAAGTGTTGGCGCCCCT---CAACAACAACAAAAAACAGTCCCTCAACAGAAAGAAGTAC
G-------------------------------------------------------------------------------
--------------------------AAACAGAGTACAAGGAGGCACTCACTAATACAATCTCCTAAAAAA---------
----CTACTCCCACGATCTCATAACATA----------------------AGACGTTTTTTAGTGTCAAAAAAGTCTT--
------------------------------------------------------ACATTATGGGACGGAAAGAGTACGAA
ACAGAGCACAAACCACCCTTCTCAAG------------------------------------------------------
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------------------------------GACACATGCAACTAAATTATTACAAATCCCATAGAACCAGC----AAAAA
ACAAAAAAGACATCATAGCAACTTGCCAAACGCAACACAAGCTATA-CCGAGTCCCCTACGTCGGAGGGG--GAGATCAT
CCAGACACCAACAGAAACCAGGCAGCAAACCTTCTTGTACAAGATTTATTCTTTCGGAAGCTTCCTGGTGCCATTATGCG
TTAATGACTCAGGGAATAATATACCTCAAACATTTCGAATGGAAAACTTCACGTCCGGTGAGTTGCACCTCCTACCAGGC
TACAAGGCATCCAATTCTGTAAGAAAGCATCCAACTGCACCGTGCCATCAATCACTTGCTACAATAATTCAGGACGCCTT
TATTCTTGCTTCATGTAGGATTTGTACTCTGCACACTTGGGAGACCCAAGAAGCGGCCTATAAATACCTTGGTCCATCCA
TTCCCCAGTTCATCAAGCACACGACAGCTTAAGTTTCTAAGCCTTCCAGTGCCGGAACAGAGCAGCATATAAGAATGGCA
TCCCTGAAGGCCGTGAAGCCAACCGGACTTGACGGGAAGGCCAAGGAGCCTACCAAGGTTAGTGCCACCAAGGGACCTGC
AAAGCTCAGTGCCACGGCGACCAAGCCAGCAGCCGCCAAGGGTGGCATCAAGAAGGCTGAGTCAAAGCCACGGGAGCCTA
AGAAGAGGGTACAACCTGCAGCTGATGTTATATTGAGATCC-T-ATAACCTTCACCTTGCATGCTCTTTCCCTGATGATC
TGGTGTTTTTTCAAATGACAGCAGGTGAAGAGCACCAAGCCAGCAGCAGCAAAAAACTGACAACGGCAGCAGGAGAAATG
GAGCTTGCGTAGCTATCTCCATGGTGCTATGACTTATATATGAATCCCACCTTTCCCTTCCTCTGTCTCCCATGATGTCG
ATCACGCCTAGACAGGGTGTACTCA--------CAATCCATGTGA-GAATATTACAAATAAGACGTGTAGTTCTGCCATC
TGCTTCATCTTATCCTGCTTGATGTTTCACTGCACTCTCCCATTTTACGTGCGTTTGTTCGGGTTCGGTTGGCAAATACA
ATAACATGAACACCAGTCGCACGAGATCCTAAGAAGTAACATCTCCGCCGTGTCATCTG----AAAAAAAAGTGAAACCC
ATTATGCTAACAATAATAAGAGTACATAACAAACGATTATCATGATCCTACACAACCGT---------------------
------------AACTGTTACAAAGTCACAAAACCAATCACCGTAAACGATGATGATATCTCAAAAAGGAACACTACATG
AATGACCAGCCACACTCACCCAAAAATTAGAAGAACACACACTTGGTAAGTTATAAAAAGAAAAGTCAAAGGTTGGCACT
TCCGCAATTACCCTGATGCATTTAGAAACAACAAGAAAACTTCCTAGACCAACTTCTATATTACCTATACAGTGACTTCC
TAGTTTTGTGTTCGACACAAATTAGAACATTGCAGTCTGCAGAACACATTATTACAAGCCTTTGTGAGTGATATAAGGTA
CACCTCATCTACAACTTCGAAAACA-AAGGGGGAAATGAACGCATAGTTTCGACTCATGTAGGTTCTTCCACCTGAAATG
GATAGCAGGTAAAGAAATGTACAGGTCGACACGCCAGG------------------------------------------
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>chr3B_84
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---GCCAAACACTCCCTTTTGCTTGATCAGGGTCATCACTTGTCGCTCATTTCTCCGCATGCCCAA-TACGCATCCCTCT
TAATGTTCAAATGAATCAATGAAGTGCTGGCACCCTTAA--------AAAAGAAAATAGTCCCTCAACAAAAAGAAGTAC
G-------------------------------------------------------------------------------
--------------------------AAACAA---------AGGCACTTACTGATACAATATCCCAAAAACTACTCCCTC
CGTCCTACTCCCTCCGTCCGAAAATATTTGTCAAAAGAATGAATGTATCTAGACGTATTTTAGTTTTAGATACATCCATT
TTATGCATTTCTACGACAAGTATTTCCGAACGGAGGGAGTGAGTATAATTTAAGACGTAATGGGACGGAGGGAGTATGAA
ACAGAGTACTCTCTCCATTCCTAAATATTTGTCTTTCTAGAGATTTCAACAAATGGCTACATACAAAACAAAATAAAACA
AAATAAGTGAATCTACACTTTAAAATATGTCTATATTCATAGGTATGTGGTAGTCTATTTGAAATCTCTAAAAAAACAAA
TATTTAGGAACTACTCCGTCTAATATTTAGTAACTACTCCCTCCGTCCTATAATTTAGGACGTAATGGGACGGAGGGAGT
TTGAAACAAAGTACTGTACAAGACACCCTTGACACATGCAACTTAATTATTATAAATCCCATAGGATCAACGAAAAAAAA
ACAAAAAAGACGTCATGGCAACTTGCCAAACGCAACACAAGCTATAGCCGTGTCCCCTACGTCGGAGGGGGAGAGATCAT
CCAGACACCAACAGAAACCAGGCAGCAAACCT---------------------TCGGAAGCTTCCTGGTGCCATTGTGCG
TTAATGACTCAGGGAATAATATACCTCAAACATTTCGAATGGAAAACTTCGCGTCCGGTAAGTTGCACCTCCTGCCAGGC
TACAAGGCATCCAATTCTGTAAGAA-GCATCCAACTGCACCGTGCCATCAATCACTTGCTACAATAATTCAGGAAGCCTT
TATTCTTGCTTCATGTAGGATTTGTACTCTGCACACTTGGGAGACCCAAGAAGCGGCCTATAAATACCTTGGTCCATCCA
TTCCCCAGTTCATCAAGCACACGACAGCTTAAGCTTCTGAGCCTTCCAGTGCCGGAACAGAGCAGCATATAAGAATGGCA
TCCCTGAAGGCCGTGAAGCCAACCGGACTTGAAGGGCAGGCCAAGGAGCCTACCAAGGTTAGTGCCACCAAGGGGCCTGC
AAAGCTCAGTGCCACGGCGACCAAGCCAGCAGCCGCCAAGGGCGGCATCAAGAAGGCTGAGTCAAAGCCACGGGAGCCTA
AGAAGAGGGTACAACCTGCAGCTGATGTCGTATTGAGATCC-TTATAACCTTCACCTTGCATGCTCTTTCCCTGATGATC
TGGTG-TTTTTCAAATGACAGCAGGTGAAGAGCTCCAAGCCAGCAGCAGCAAAAAACTGACAACGGCAGCAGAAGAAATG
GAGCTTGCAT-GCTATCTTCATGGTGCTATGAATTATATATGAATCCCGCCTTTCCCTTCCTCTGTCTCCCATGATGTCG
ATCATGCCTCGACAGGCGCTGACAGTGTGTGTGCAATCCATGGGACGAATATTACAAATAAGACGTGTAGTTCTGCCATC
TGCTTCATCTTATCTTGCTTGATGTTTCACTGCTTTCCCCCATTTTACGTGTGTTTGTTTGGGTTCGATTGGCAAATACA
GTAACACAAACGCCAATCG-CCGAGACCCTAAGAATCATCATCTCCGCGGTGTCGTCTGTAAAAAAAAAAAGCAAAACCC
ATTATGCCAACAATAATAGGAGTACATGACAAACGATTATCATGATCCTACACAACCGCAATCATCAAACGAACAGAGAT
TTCAGGACACAGAACTGTTACAAATTCGCACAACCAATCACCTTAAACGCTGATGATGTCTCAAAAAGTAACACTACATG
AATGACCAGCCACACTTACCCAAAAATTAGAAGCACACACACTTGGTAA-TTATGAACAGAAAAGTCAAAGGTGGACACT
TCCGAAATTACCCT-ATGCATTTAGAAACAACAACAAAACTTCCTCAATCAACTTTTATGTTACCTCA------------
---------------------------------------CAGAACCCGTGATTACAAGCCTTTGTGAGTGATATAAAGTA
CACCTTATCTACAACTTCAAAAACAGAAGGGGTAAAAGAAGGCGTTGTTTCGACTCATGTAGGTTC--------------
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>SNPs
--------------------S------------------------------------------S----------------
SSS--------S--------------------------------------------------------------------
----------------------------------S--S-S---------------------------------S------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
--------------S-----------------------------------------S-----------------------
------------------------------------------------------S-------------------------
-----------S---S----------------------------------------------------------------
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----------------------------------------------S---------------------------------
---------------------S----------------------------------------------------------
-----------------------------------------------SS-------------------------------
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------------------------------------------------------------------S-------------
S--------------------------------------------------------S----------------------
-----------------------------------------S--------------------------------------
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-------------------------------S------------------------------------------------
--------------------------------------------------------------S--S--------------
------------------S--------------------------S-S--------------------S-----------
-----------S----------------------------------------------------------S------S--
------------------------S-----------------S----------------------------------S--
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--S-------S----SS-----------------S---------------------------------------------
---------------S--------------------------------------------S-------------------
--------------S---------------------------------------------------S---SSSSSS----
----------------S--------S-S---S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_254
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--------------------------------------------------------------------------AAGTAC
TCCCTCCGTTCGGA------------------------------------------------------------------
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>reverse_2506
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-------------------------CCAACATGCCAGGAAAGTGC-----------------------------------
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