>input_sequence_84482
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-------------------------ATGAAGCTGGAAGGGTCCTGCAAGGGTGAGCTCGCTCTAGCCCAAACAGGCTGCA
CCCTCAAATGGTTCGGCATCAAGGGCACCAGGATTTGCGAGGTGCCCCCTAACCTCCCCATCACCCTCCTCTTACAACTG
CTCATCAGGACGCCGCCCTGCCAAGGCTTCTTCCATGGGTGCCGCGGGAGCACGCGTGGACACAGCCACCTCGCGCCCCA
GTGGCTTGACGCCACGCCCCTGGATGCCAGCACTGCCCTGCCCCTCAGCAGCTTCACAACAACA------AGTGAATTAG
GGATTAGCGACTGA------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G055500
GTGGACCTTCTCATGAAGTGTTCCTCTGTATATTCTTTATTTTCTTTGATTTGTTGCACCAGGACTTTTTAAGTAATTGC
TCGCTCTCTTGGGTATTTGTATGCCGCGAACAGTACGGCTTGTTTCTGTTTTCTTTCCGACTTGATCGTCTTCTCTGCAT
GCCTTCGCTTAATTTCAGGTCCTCTCCTTCTGAAGGCACGTCCATGATATTAACTACATCCTCTATATTTATCTTCAACT
GTTTTCTCTCGACAACGAATGACTCAACTTCCGTACTGTCTGGTGACCAATTTGAATATCGCATAGATGTAGTAACCCCT
TGAGAATAGAGTTTGCAATCTTTTCCCTCTAGCCATCCAAGACTTTCCAAATAAGGTCATAAATAGCACCTTGATAGCAG
ACCATTGTTTTCTGTACGTAAATCTAAACTATCTAAACTACTAATAAAAGAGCAAACATAAACTCCTCTAAAACCACACA
GCAAACTATACACAAGATAATCAGAGCCCTCGGATCAAATCAAGTTAAACATATCCTACTGTCCATATTAAGCAAATGGT
CTATCGTCCAGATCAACGGCTCAC--------------------------------------------------------
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--------------------------------------------GTCAAATGTTCTGCCGAGCAGACGTCCCGGTCTGCC
AATAGTCTGCTTCCCCCGATCCGCGCAGCCTCGCCCATAACACATGA---TTTGCGGATCGGCTGCACGCTTGCCGCCAC
CATCTTCGCTGCCTCCTCGAGATGATGCCGCCCCATCTCCCCCCACCCCGTTGCTACGAAAGTCCCAATCGACCCCGTCT
CTCTTCTGAGAAAGCCGCCACCGCTCGCCGCCCCGCCCTCAAATTCCTCTCCACTCCATATCGCGTTCCCCTGCC-CATG
CCGGATGGATCCAGAGGAGGAGTTTGCCTGCCGTCCCGTGGCTTGAGTCACCCATGTGAGAGAGATAGATAGGAGAGAAG
GAGGAGCGC---------------------------------GGAGGAGGCGGTGTGCGGGATCTGCATGGTGGATT---
-----TGTTCAAGGGGAGCGACGCCATGAAGCTGGAAGGGTCCTGCAAGGGTGAGCTCGCTCTAGCCCAAACAGGCTGCA
CCCTCAAATGGTTCGGCATCAAGGGCACCAGGATTTGCGAGGTGCCCCCTAACCTCCCCATCACCCTCCTCTTACAACTG
CTCATCAGGACGCCGCCCTGCCAAGGCTTCTTCCATGGGTGCCGCGGGAGCACGCGTGGACACAGCCACCTCGCGCCCCA
GTGGCTTGACGCCACGCCCCTGGATGCCAGCACTGCCCTGCCCCTCAGCAGCTTCACAACAACA------AGTGAATTAG
GGATTAGCGACTGA------------------------------------------------------------------
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--------------------------------------------------------------AGATTTTATCTCTGCAAT
TTTAAGGACATAATGCATGATTAGAACACAAGTTTGGGTATAACTTTGATGATACACATTAGTAAATTTGGGGATCATTC
TGTTGATTTCATATTATGCCTATTAATTATAGGACCAGTAACACATGTTTCTTTTGCCTGAGTATGTTAATTTAATTATA
GAAATATTACTCTCATTAGTTTTTGCATTGCATATCATTTATTTCTGAAGATTGAATAGTACCCTGCAGTCAGAAATAAG
GGTTGTTGTGACTTACTGAAAAATATGCCATCTCCCCTGTATTTCTACACTAGCGACTTGTATATTTTCTTTTGTACTCT
ACTCAAGTTTGGCTCCTGC--CTCCTTTACTCAAGCTACACTTGTGATTCATCTCCTTTGCCAGACTGCTACTTGGTACC
AGCTCTACTTGTTTGTGT-----------------------TTACATTGCCGTTTATGGCACCAAGGCCTGCACCTCAAG
ACCAGACACTCATAACTTGTGTGTAGCTTGTAGGGTTCAGGATTTGATTTTTTTTTCCAGTTTCTTTTCTATGGACAGTG
TATGGCACCTGGAAGATGATTCTGTGAACTTTATGTGACATGCTATTTTTCCTGAGTGATGCATAAGCAAGAAAACCTAG
CTAGGTCATCTTAATATAATAGGAAATAGGACATGCCTGGTTGTTTCTTAATTCTTAACTTTGTTTATTTGGCACATGGA
AGGACATAGAGTGACACTTTATAGATGTACATTTGCTATTCTTAATGTCTTCAGTTGAAAAATAAATGTGATATTCCTTG
TGTTGGCACCGTGCAAGTTACATGTCAATAGAATTGAATCACAGAGAGATGCATCATTAGGTGAAATTTTTAATGAGT--
--GACAGACAAAATACAAGGGGCAAAACTGAAGCAAGAATACCACTAACCTGCATGATCTGAACGGCATGTGGAATACCA
AAAGGTCTTTTCCTACCATGCGGCCCAGTTTGGAACTTGATGAATTCGTAA
>chr1A_425
TAATCTA-------------------------------------------------------------------------
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------------------------------ATCTAAACTACTAATAAAAGAGCAAACATAAACTTCCCTAAAACCATACA
ACAAACTCTACACAAGGTAATCAGAGTCCTCAGATCAAAACAACTTAAACATATCCTACTGCTCATATTAAACGAAAGGT
CTATCGTCCAGATCAACGACTAAGGCCCCGTTCGGAAGTCATCTCGCTTCTAAAAAGAGCTGGCTCCAGCTTCTCATCTT
GCCAGCCAGCTTCCGTGAGGAGCAGAAGGCGTTCGGCACACTGCTTCAGCTCCCAGCCTGGCATAGGTGCGAGGCGCGGT
GGCGGAGATTGGTGGCGGCGTGGCGGTGCGCCGGTGGAGACTGGCGGGGCGAGGCAGAGATGCGAGGCGCGGCGGCGGAG
ACTGGCGGCGGCGCGGGGGCGCGCCGGCCGGCATCCGACGGGGTGGCGGCTGCTAGGGTTGGAGAGCAGAGGAGCGCTGC
ACGTGTTTCTGTACGAGCAGCTCTCGTCGGGCCAACAAGCTGGGCTTTGAGCCAGGAAAACGTTTGGGGTGGCACTTCGG
GATGGCATTCCTACCGTAATTTGGAGGAACTCCACCTTCTGGTTTCTGTGAAGCTAGGCCGGCGCTGCTTCTCGTTTCCT
ATAAATTTACACGCTGGATTCTTTATCTCCGCGGAGCTAGCTTCTCGGAGGATAACCGTTCGGGCTGGCTTCTCGGATGA
GATTTTAAGAAGCTGGCTCTAGAGAGCTTCCGAACGGGACCTAAGTCAAATGTTCTGCCGAGCAGACGTCCCGGTCTGCC
AATAGTCTGCATCCCCTGATCCGCGCAGCCTCGCCCATAACACCTACTAGTTTGCGGATCGGCTGCGCGCCTGCCGCCGC
CATCTTCGCTGCCTCC---------TGCCGCCCCCATCCCCTCCCCCCCACCC------AAGTCCCAATCGATCCCGTCT
CT--TCCGAGAAAATCGCCGCCACTCCCGCT--CGCCCTCAAATTCCTCTTCACTCCATATCGCGTACCCCCGCCGCATG
TCGGATGGATCCAGAGGAGGAGTTTGCATGCCGTCCCTTGGCTTGCGTCACCCATGTGAG-GAGATAGATAGGAAATAAG
GAGGAGCGCGTAGATTAGTATGATAGAGAGGACACTGGAGGAGGAGGAGGCGGTGTGCGGGATCTGCATGGTGGTCCGGT
TGATCTGTTCAAGAGGAGTGACGCCATGAAGCTGGAGGAGTCCTACAAGGGTGAGCTCACTCTAGCACAATTAGGCTGCA
CCCTCAAATGGTTCGGCATCAAGGGCACCAGGATTTGCGAGGTGCTCCCTAACCTCCCCATCACCCTCCTCTTACAACTG
CTCATCAAGACGCCGCCCTGCCAAGGCTTCGCCCATGGGTGCCGCGGGAGCACGCGTGGATACAACCACCTCGCGCCCCA
GTGGCTT-ACGCCACGCCCCTGGACGGTGGCACTTCCCCGCGCCTCAGCAGCTTCACAACAACACACGACAGGGAATTAG
GGATTAGCGACACTGCTGCCGACACCGGTTTTTTTGTCCATCAGGTTTAGCCACACCGCACGCTTCATTTTGTCTTCGAC
CACAGCAGATCAGGTGCGCCTTTTTTTTGCCTTATGCATAAGCAATACAATCTATTTCCCCTCGCTGTCTCGATTTCGAA
TTTGGTCCATGTGAATTCCGCATTCGGTGTAAATTTGGCCCAACTGAAGATGTGTTTGTCCTAGGTTTGATCTCTGCAAT
TTTAAGGACATAATCCATGATTAGAACACAAGTTTGGGTATCAGTTTGATGATCCGCATTAGTAAATTTGGGGATCATTC
CATTGATTTCATATTATGCCTATTAACTATAGGACCGGTAATACTTGTTTCTTTGGCCTCAGCATGTTAATTTAATTATA
GAAAGATTACTCTCATTAGTTTTTTCATTGCATATCATTTATTTCTGAAAATTGAATAGTACCGTGCAGTCAGAAATAAG
GGTTGTTGTGACTTACAGAAAAATATGTTATCTCCCATGCATTTCTACACTAGCGACGTGTATATTTTC-TTTGTACTCT
ACTCAAGTTTGGCAAGTTTGGCTCCTTTACTCAAGCTACACTTGCGATTCATCTCCTTTGCCAGACTGCTACTTGGTACC
AGCTCTACCTGTTTCTGTTTTATCTTTGTTATTATGCGGTCTTACATTGCCGTTTATGACACGAAGGCCTGCACCTCAAG
ACCAGACACTCATAATTTGTGTGTAGCTTGCAGGGTTCAGGTTTTGA-TTTTTTTTCCAGTTTCTTTTTGTA--------
-------------------------------TATGTGACATGCTATTTTTCCTGAGTGATGCATAAGCAAGACAACCTAG
CTAAGTCATCTTAATA-------AAATAGGACATGCCTGGTAGTTTCTTAATTCTTAACTTTGTTTATTTGGCACATGGA
AGGACATAGAGTGACACTTTATATATGTACATTTGGTATTCTTAATGTCTTTAGTTGAAAAATAAATGTGATATTCCTTG
TGTTGGCACCGTGCAATTTACATGTCAACAGAATTGAATCACAAAGACACGCATCGGTTGGTGAAATTTTT----AGT--
--GACAGACAAAGTACAAAGGGCAAAACTGAAGCAAGAATACCACTAACCTGCGTGATCTGAACAGCATGTGGAATACCA
AAAGGTCTTTTCCTACCATGCGGCCCAGTTTGGAACTTGACAAATTC----
>chr6D_1738
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-----------------------------------------TTACATTGCCGTTTATGGCACCAAGGCCTGCACCTCAAG
ACCAGACACTCATAACTTGTGTGTAGCTTGTAGGGTTCAGGATTTAATTTTTTTTCCCAGTTTCTTTTGTATGGACAGTG
TATGGCACCTGGAAGATGATTCTGTGAACTTTATGTGACATGCTATTTTTCCTGAGTGATGCATAAGCAAGAAAACCTAG
CTAAGTCATCTTAATAT-------AATAGGACATGCCTGGTAGTTTCTTAATTCTTA-CTTTCTTTATTTGGCACATGGA
AGGACATAGACTAACACTTTATAGATGTA-----GGTATTCTTAATGTCTTCAGTTGAAAAATAAATGTGATATTCCTTG
TGTTGGCACCGTGCAATTTACATGTCAATAGAATTGAATCACAGAGACATGCATCATTAGGTGAAATTTTT----AACGA
GAGACAGACAAAATACAAGGGGCAAAACTGCAGCAAGAATACCACTAACCTGCATGATCTGAACGGCATGTGGAATACCA
AAAGGTCTTTTCCTACCATGCGGCCCAGTTTGGAACTTGAAGAATTC----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------S-S---------S---
S------S--------S---------S----S-------S---S-----------------SS--------S-S--S---
------------------S--S-S--------------------------------------------------------
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----------S-----S--------------------------S-SS-------------------S---S-------S-
----------------SSSSSSSSS---------SSSS---S--S----SSSSSSSSSS-------------S-------
--SS--S------SS----S--S---S-SSSSS-----------------S---------------S----S--------
S--------------------------S---------S-------S--------------S-------------S-S---
--------------------------------------------------------------------------SSS---
-------------S----S-----------------S-S-----S-------------S-------S---SS--------
---------------------------------------------S----------------------------------
-------S----------------------SS----------------------------S---S---------------
-------S----------------S-SSS-----S---S--S------------------------------S-------
-----------SSS------------------------------------------------------------------
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----------------------------------------------------------------S---S-----------
--------------S--------------------------S-S---------S-S------------------------
SS------------------------S---------S----S--S---------S----S--S-----------------
----S-------------------S------------------------S-------------S----------------
----------------S----------SS-------S--S-----------------S-----------S----------
-------------SSS-SS-------------------------S-----------------------------------
--------S-----S-----------------------------------------------------------------
--------------------------------------------------------------------S-----------
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---S-------------SSSSSS------------------S--------------------------------------
-----------------------------------S--------------------------------------------
----------------S------------------------------S-----------------------SSSS-----
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----------------------------------------S------SSSS
>forward_205
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-------------------------CCTTCTGAAGGCACGTCCAT-----------------------------------
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>reverse_1882
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-----------------------------------------CCCTCAGCAGCTTCACAACA-------------------
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>forward_1380
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CTCTTCTGAGAAAGCCGCCA------------------------------------------------------------
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---------------------------------------------------
>reverse_2494
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-------------TCCTGCCTCCTTTACTCAAGC----------------------------------------------
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---------------------------------------------------
