>input_sequence_84480
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----ATGGACAGAACAATCGGTGGCGGTGTCAGAGGGGAAGGCGAGAAGAAGGCGGCTGCAGCGTGCGACGTGGAGGCGC
TGCGCAAGTGCCTGCAGGAGAACAAGGGTGATCGTGTCAAGTGCCAGGCTCACATTGATGCCTTCCGATCCTCATGTTCT
GTCAGCCCCACCACTACCTCCGACGGCCATCCTGACGTATGATCTTCCACTTCTTGGCTCCTAAATCAGAATAATTCCTT
TTCACTAATCTTTACCCATGTATTTATTAAGTACATTCTTCCTACCCAGATTGACAGGTC-----------TATCTGA--
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>chr5D_1_TraesCS5D01G232300
CGCCAAGCGACTAGGGATCCCACCAGTTTAGACTTGAGAGGCTTTGGGTTAGAGGGG--------------GGACCTATG
CCTCACCAGGACGGTGAGGGGCGGCGGGGCTTAGCGCTGCCATGATTTTTTTTTACTTGCACACATTTCGTAGTTGTAAG
CAGGCATCTAGACAGTAAACATCTCCGAGCTGAAATTTCTTTATCCAACGAAGATCACTTGTGTACCTCACCATGCTAAA
GATAAATAATAC--TAGAACGCTGAATAGTTGGAGAGTGGTAGTGCTGGTGCTTAGG--GACCAATAAAACACAGAATTA
AACATAT-------------------------------------------------------------------------
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----------------------TCTCAATTGGATACACACGTACAGTTACAAATAATTGTTAACAGTAGTGTACGTCATA
CCAATGCATATTAAGCTACTCGTAGTTTCTAGAAAGCCTAACATAACTCCCTTTGTGCTTACATCTTTTGTAAGTGTGTA
AATGTTAAAATCTACTGCCAGGCTCGTCTAATCTTTAACATCTTCCTGCATGAGATGAGGTAGAACTTAACATCAAGATT
TTCTTCGAATTTTAATTGTCTTCGGTCTTTACTGCTGTTAAGACTTAAGACACAATGGACTTTTAGAAGCTGGGAGTAAA
TGAGATTTCAACATAAAGAGTAGTACAAACTAGTGGATTAGCAGATAAAATGGCATATGTATGGTGTGGCAACCATCTAT
TTTCTGTGCTTATTTGTCAGATTCTTGATCATAGG-TCAGATATTAGTGCATATGCATTCCTGATTGTTTGCTCCATTAG
GTACCATAGTTTAAGG--GCAGATGCACGTTAGTTACTGAAGAGATCTGAAATCTCTCTTAGAAAAATAAATAAGACAAC
TTCTTTGTTTCAAGAGGAGCAACT--TGAATCTTAAGTATGCCAAAAGTACATTCCACATTTACATAATTGTGTTTACCT
TTTGATTATCACATGATGGGTACAGACTGGTCCTTTTGACCCGTGCT------TCAAGGCTGAGTAGTGGCGGCTCTGGC
TGCGATGGACAGAACAATCGGTGGCGGTGTCAGAGGGGAAGGCGAGAAGAAGGCGGCTGCAGCGTGCGACGTGGAGGCGC
TGCGCAAGTGCCTGCAGGAGAACAAGGGTGATCGTGTCAAGTGCCAGGCTCACATTGATGCCTTCCGATCCTCATGTTCT
GTCAGCCCCACCACTACCTCCGACGGCCATCCTGACGTATGATCTTCCACTTCTTGGCTCCTAAATCAGAATAATTCCTT
TTCACTAATCTTTACCCATGTATTTATTAAGTACATTCTTCCTACCCAGATTGACAGGTC-----------TATCTGATA
CACTATTTTAAACAAATGAAACTTTCCTCAAGTTAAAAGGCAAACATGGACTCATCTGAAACTTGATTTAGAGCATGACA
CCGTTGTTTTCAGTG-----------------------------------------------------------------
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----------TTAGTCATCACTCCGAGGTCTTCGAGACAAACGAAAGAGCTGCTTTGGGAAGAAATCAGTATGAATAAAG
CTGATAAACATAGTATACATGCAGATAGATCCTACATACAGAGAAATAAATCATGTCATCTTGTAACTTCTAAACACACT
CTCTGAACCAGTTGGTAGAGTTTCAAGTGCAATCAGGACTGAAACATGGTGCTATTTTTCTGGTGCAGGTAAAAAAGGGA
ATGTGAAACACAATGGTTCTGTTGCTGGGGTAGTCTTACAAGAAACTGCATGGAATACTTATGATGAATAAGGTGATGAC
GCAAATGCAACATATGTGGATGGTCATGTGAAAGA--GGATAATTAGAACTTAGGGTATGTTTGATTCGTAGCCAACATG
TACCTTACCGATTTTTTTGGCTGTGACCAAAACTTTGGTCATGATTTGGATGGTTGTCAACTTTTTGGCATGGCAATGGC
TTGTTACCACTCTAGTTCATTTTTTCTGCTAATATTACCCTGCTCATGGGCACACAAAACCTTGAACAAAATTTGGCTAG
CCAAATATTTGGTGGGTCAACCCATGGCTCAAACCAAACTTACCCTAAGACCTAAT---TATCCTATATATGGTATTTGT
TGGTGTGGAAAGAACCATTGGCAAAACTCTGAAACATGGATGTTAATGTTGTCTTCAATGAGACACTTTTTGCTACGGGC
TGTGCTAGGCTATTTCAAAAGTTGGAATCGGTCTAGTCTAGTGCTTTGGATAATAGGCACCTGATTCAGTAAAATCTTGT
AAGGTGTACAAGCTTATCTTTTTTCCTTCTTCCACTTTTCGTTAGGGCTTTGGTTGAATAAAATGGTTAGGTGATTGCGA
TCAACTCATACACTACTTGTAGCTAGTTGGTTTATAAT
>chr5A_1
CGCCAAGCGACTAGGGATCCCACCAGTTTAGACTTTAGAGGCTTTGGGTTAGAGGGGCGCGGGCAGAGGGGGGAGCTATG
CCTCACCAGGACGGTGAGGGGCGGCGGGGCATATCGCTCCCATGATTTTTTTTTACTTGCACACATTTCGTAGTTGTAGG
CAGGCATTTAGATAGTAAACGTCTCCGAGCTGAAATTTCTTTATCCAATGAAGATCACTTGTGTACCTCACCATGCTAAA
GATAGATAATACAGTAGAATACTGAATAGTTGGAGAGTAGTGGTGGTGGTGATTATAACGACCAATAAAACACAGAATTA
ACATTTTCTCGGAGGATCGTGTCTGTTGGGCAAACTAAATGTGAGAAAGTATTTTCTTCAAATTTGTAGCTTGCAATTAC
CCAAAGCAATGGAAAACAAATTATTAGGGA--TTATGATTGATGGTAATGTTTCTGAAGATGGCTCACAAGCATAGTAGC
TAGAGTTTGTTCTAGACAAAGATCTCAATTGGATACACATGTACAGTTGCAAATAATTATTAACAGTAGTGTAGGTCATA
CCAATGCATATTAAGCTACTCGTACTTTCTAGAAAGCCTAACATAACTTCCTTTGTGCTTACATCTTTTGTAAGTGTGTA
AATGTTAAAATCTACTGCCAGGCTCGTCTAATCTTTAACATCTTCCTGCATGAGATGAGGTAGAACTTAACATCAAGATT
TTCATCAAATTTTAAGTGTCCTCAGTCTTTACTGATGTTAAGAC-------ACAATGGACTTTTAGAAGCTGGGAGTAAA
TGAGATTTCAACATAAAGAGTAGTACAAACTAGTGGATTAGCAGATAAAATGGCATATGT-TGGTGTGGCAACCATCTAT
TTTCTGTGCTTATTTGTCAGATTCTTGATCATAGGGTCAGATATTAGTGCATCTTCATTCCTGATTGTTTGCTCCATCAG
GTACCATAGTTTAAGG--GCAGATGCACGTTGGTTACTGAAGAGACCTGAAACCTCTCTTAGAAAA-GAAATAGGACAAC
TTCTTTGTTTCAAGAGGAGCAACT--TGAATCTTAAGTATGCCAAAATTACATTCCACATTTACATAATTGTGTTTACCT
TTTGATTATTACATGATGGGTACAGACTGTTCCTTTTGACCCGTGCT------TCAAGGTTGAGTAGCGGCGGCTCTGGC
AGCGATGGACAGAACAAGCAGTGGAGGTGTCAGAGGGGAAGGTGAGAAGAAGGCGGCTGCAGCATGCGACGTGGAGGCGC
TGCGCAAGTGCCTGCAGGAGAACAAGGGTGATCGTGTCAAGTGCCAGGCTCACATCGATGCCTTCCGATCCTCATGTTCT
GTCAGCCCCACCACTACCTCCGATGGCCATCCTGCTGTATGATCTTCCACTTCTTG-CTCCCAAATCAGAATAATTTCTT
TTCACTAACTTTTACCCATGTATTAATTAAGTAAATCCTTCCTACCCAGATTGACCCAGATTAACAGGTCTTATCTGATA
CACTATTTTAAACAAATGAAATTTTCTTCAAGTTAAAAGGCAAACATGGACTCATCTGAAACTTGATTTAGAGCATGACA
CCGTTGTTTTCAGTGTTAGA------------------------------------------------------------
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----------TTAGTCATCACTCCGAGGTCTTCGAGACAAACGAAATAGCTGCTTTGGGAAGACATCAGTATCAATAAAG
CCGATAAACATAGTATGCATGCAGATAGATCCTACATACAGGAAAACAAATCATGTTATCTTGTAACTTCTAAACACACT
CTCTGAACCAGTTGGTAGAGTTTCAAGTGCAATTAGGACTGAAACATGATGCTATTTTTCTGGTGCAGGTAAAAAAGGGG
ATGTGAAACACAATGGTTCTGTTGCTGGTGTAGTTTTACAAGAAACTGCATGGAATACGTATGATGAATAAGGTGACGAC
TCAAATGCAACATATGTGGATGGTCATGTGAAAGA--GGATAATTAGAACTTAGGGTATGTTTGATTTGTAGCCAACATG
TACCTTATCAATTTTTTTGGCTGTGACCAAAACTTTGGTCATGGTTTGGATGGTTGTTAACTTTTTGGCATGCCAATGGC
TTCATACCACGCTAGTTCATTTTTTCTGCTAATATTGCCCAGCTCATTGGCACACAAAACCTTGACCAAAATTTGGCTAG
CCAAATATTTGGTGGGTCAACCCAGGGCTCAAACCAAACTTACCCTAAGACCTAATAATTATCCTATATATGGTATTTGT
TGGTGCAGAAAGAACCATTGGCAAAACTCCGAAACTTG-ATGTCACTATTATCTTCAACGAGTCACTTTTTGCTACGGGC
TGTGCTAGGCTATTTCAAAAGTTGGAGTCGGTCTAGTCTAGTGTTTTGCATAATAGGCACCTGATTCAATAAAC-CTTGT
AAGGTATACAAGCTTATCTTTTTTCCTTCTTCCACTTTTCCTTAGGGATTTGGTTGAATAAAATGGTTAGTTGATCACTA
TCTACTCATACAATACTTGTAGCTAGTTGGTTTAT---
>chr5B_1
CGCCAAGGGACTAGGGATCCCACCAGTTTAGA-------GGCTTAGGGCTAGAGTAGCGCGGGTTGAGTGGGGAGCTGTG
CCTCACCAGGACGGTGAGGGGCGGCGGGGCATAGCGCTCCCATGATTTTTTTTTACTTGCACACATTTCGTAGTTGTAAG
CAGGCATCTGGACAGTAAACGTCTCCGAGCTGAAATTTCTTTATCCAATGAAGATCACTTATGTACCTCACCATGCTAAA
GATAAATAATA-----GAACGCTGAATAGTTGGAGAGTAGTAGTGCTGGTGCTTAGG--GACCAATAAAACACAGAATTA
ACATATTCTCGGAGGATCGTGTCTTTTGGGCAAACTAAACGTGAGAAAGTATTTTCTTCAAATTTGTAGCCGGCAAATAC
CCAAAGCAATGGTAAACAAATTATTTACGGATTTATGGTTGATGTTAATGTTTCTGAAGATGGTTCACAAGCATAGTAGC
TGGAGTTTGTTCCAGACAATGATCTCAATGGACAC---------------------------------------------
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-------------------------------------------------------CATTCCTGATTGTTTGCTCCATCAG
GTACCATAGTTTAAGG--GCAGATGCACGTTGGTTACTGAAGAGATCTGAAATCTCTCTTAGAAAAAGAAATAAGACAAC
TTCTTTGTTTCAGGTGGAGCAACT--TGAATCTTAAGTATGCCAAAAGTACATTCCACATTTACATAATTGTGCTTACCT
TTTGATTATCACATGATGGGTACAGACTGGTCCTTTTGACCCGTGCT------TCAAGGTTGAGTAGCGGCGGCTATGGC
GGCGATGGACAAAACAAGCGGTGGTGGTGTCAGAGGGGAAGGTGAGAAGAAGGCTGCTGCAGCGTGCGACGTGGAGGCGC
TGCGCAAGTGCCTGCAGGAGAACAAGGGTGATCGTGTCAA-TGCCAGGCTCACATCGATGCCTTCCGATCCTCGTGTTCT
GTCAGCCCCACCACTACCTCTGACAGCCATCCTGCCGTATGATCTTCCACTTCTTGGCTCCCAAATCAGAATAATTCCTT
TTCACTAACTTTTACCCATGTATTTATTAAGTAAATTCTTCCTACCCAGATTG----------ACAGGTCTTATCTGATA
CACTATTTTAAACAAATGAAACTTTCTTCAAGTTAAAAGCCAAACATTGACTCATCTGAAACTTGATTTAGAGCATGACA
CCGTTGTTTACAGTGTTAGAGCATCTCCAACATGCGCCCAAAAAGAGCTCCGTGCACTAAAAAATCATTTTTTTGGTCGC
GGAACAGCTCCAGCAGAAGCTGTAGCGCTAAAAGTTTTTGGGCGCGCTCTGAAAAACGCTATCGCGCGCAGCATATTTTG
GGCTCCGGATTGCGCGCGCTTCACAATTTGCACTGTGTGCTTTTTGGGCGCGCGTTTTTGTGCGTCTGCTAAAGCAATGT
TGGTCCCGGCGCATTAAAAGTGCTACAGTGCCGCGCTATAACTTTTATTGGGCGCGAAATTTTTGTGCGGCCGTTGGAGA
TGCTCTTAGGTTAGTCATCACTCCGAGGTCTTCGAGACAAACGAAATAGCTGCTTTGGGAACACATCAGTATGAATAAAG
TTGATAAACATAGTATGCATGCAGGTAGATCCTACATACAGCGAAACCATTCATGTCATCTTGTAACTTCTAAACACACT
CTCTGAACCAGTTGGTAGAGTTTCAAGTGCAATTAGGACTGAAACATGGTGCTATTTTTCTGGTGCAGGTAAAAAAGGGG
ATGTGAAACACAATGGTTCTGTTGCTGGGGTAGTTTTACAAGAAACTGCATGGAACACTTATGATGAATAAGGTGACGAC
GCAATAAGGTGACGACACAACGGTCATGTGAAAGATTGGATAATTAGAACTTAGGGTATGTTTGATTCGTAGCCAACATG
TACCTTACCGAAATTTTTGGCTGTGACCAAAACTTTGGTCATGGTTTGGATGGTTGACAACTTTTTGGCATGCCAATGGC
TTCATACCAC--TAGTTCATTTTTAAAGCTAATATTGCCCAGCTCATGGGCACACAAAACCTTGACCAAAATTTGGCTAG
TCAAATATTTGGTGGGTCAACCCAGGGCTCAAACCAAACTTACCCTAAGACCTAATAATTATCCTATATATGGTATTTGT
TGGTGCGGAAAGAACCATTGGCAAAACTCCGTAACTTG-ATGTCGCTATTGTCTAAAACGGGTCACTTTTTGCTACGGAC
TGTGCTAGGCTATTTCAAAAGTTAGAGTCGGTCTAGTCTAGTGTTTTGCATAATATGCACCTGATTCAATAAAACCTT--
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>chr5B_395
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---------------------------TCTAGAAAGCCTACCATAAATCAGTTTCTCCTTACTTCCCGTGTAAGTGTGTA
AATGTTAAAATCTGTCTTCATACTCGTCTAATCTTTAACATCTTCCTGCATGAGATAAA----AACTTAACATCAAGATT
TTTAAAC--TTTTAATGGTCTTCAGTCTATTCTGCTGTTAAGAC-------ACAATGG----------------------
---------------------AGTACAAAGTAGTGGATAAGCAGATGAAATGGCATATGATGTAGTG----ACTATCTAT
TTCGTGTCTTTATTAGTCG--------------------------------TATGTATCCCCGATCGTTTGCTCCATCAG
GGATAACCATAAACTAAAGCAGATGCATGTTGGTTACTGAAGAGACCC--------------------------------
------------AGAGGAGCAACTTCTGAATCTTAAGTATGCCAAAAGTACATTCAACATTTAAATAATTGTGTTTACCT
TTTGATTACCACAGGGTGGGTACAGACCGGTCCTTCTGACTCGTGATGATAACTCAAGGTTGGGCAGCGGCGGCTGTGGT
AGC------------AAACGGTGGTGGCGGCACAAGAGGAGATGAGAAGAAGGCGGCTCCAGGGTGTGACGTGGAGGCAC
TGCGCAAGTGCCTGGAAGAGAACAAGGGTGATCGCGTCAAGTGCCAGGCCCACATCGACGCCTTCCGATCCTCATGTTCT
GTCAGCCCCACCGCCACCTCCAACCAACGTCCCAGCGTATGATCTTCCACTTCTTCGCTCCCAATCAAAATAAATTTTCC
ACC---AACTTTTCCCCATGGATTTATTAAGTAAATTCTTCCTACCC---------------------------------
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>SNPs
-----------------------------------S--------------------------------------S-----
------------------------------S-------S-----------------------------------------
--------------------S---------------------------S-------------------------------
--------------------------------------S-----------------------------------------
-SSS-S--------------------------------------------------------------------------
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---------------------------------------S--------S---------S--------------S------
------------------------S-------------------------------------------------------
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---S--S----------------S--------------------SSSSSSS-----------------------------
------------------------------------------------------------S-------------------
-----------------------------------------------------------------------------S--
-------------------------------S-----------------------------------S------------
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-----------------------------------------------------------S-------S------------
S----------------S------S-----------------S-------------------------------------
-------------------------------------------------------S------------------------
----------------------------------S--------------------------S------------------
--------SS-----------------------S---------------------SSSSS--------------------
--------------------------S-----------------------------------------------------
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----------------------------------------------S----------------S----------------
----------------S------------------------S----S---------------------------------
---------------------------------S---------------------------------------------S
----------------------------------S-----------------------------------------S---
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-------------------------------------------S----------------------------S-------
--SS------S-------------------------S---S------------------------S--------------
------------------------S-------------------------------------------------------
-----S-----------------------S-----S--S----S-S-S----------S---S-----------------
--------------------------S----------------S----S-------------------S-----S-----
-----S----------------------------------S------S----------------------S----SS-S-
--S---------S----------------------SSS
>forward_1188
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-----------------------------------------------CGTGCTTCAAGGCTGAGTAGT------------
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>reverse_2441
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----------------------------------------TGCTCATGGGCACACAAAAC--------------------
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