>input_sequence_84471
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------------------------------ATGGCACTTGACCGCGCCGACAAGGAGAATTTGCCGCCGG---------C
G---GCCGCCGTCGCCCGTCCTCATGG---------CGTGGCTGTCAGGAGCTGCAAGCTGAAGCGGCTCGGGAGGTCGC
GGAGGCGGGTGCCGCTCAGGGACATCACCAACCTCTTCGCCGTGGAGTCAACGGTTGCCCAGTGGCAGCAGGCCCTGCTC
CAGCGGCCGCAGCCGCACGAGGGGT------CGGCGAC---------------GGCGGAGCCGGCCGTGAAGAACGGGCT
GGCCGG---TGCT---G---TGCTGAAGGCCGGCAGATACTCTCTCCGGAAGGAGTTTAGATAG----------------
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----------------------------------------------------
>chr5A_1_TraesCS5A01G328300
AAAAAAGTTCATGGGTTCGAAAAAAATCGTGGGGTTTAAAAAATTCGCAGATTAGAAAGAAGATCACATTTCAGTAAAAA
AAAGTTCAATTTTTTTA-AAAAATTACATAAAATTTGGAAAAAT--AAAAAATTGGAGGAAAGGTCATGAATTTGAATAA
CATTCACCTGGAAAAGATTGAAAAAGTGAAAAAAAT----GTCACCAATAGAAAAAAAGTTAACAACTAAGATTTAAAAA
AGTTCACTAAATTTGGGAAAAGTCGATAGATTTGAGATGAAAAAGTTCACAAAAATTGGAAATGATTTCTAATTTGAAAA
AAATAACACGCAATTGGGAAAGGTGCATGAATAAAAATGTAAA------------------AAGAAAATCAAACGAAAAA
GAAAGAAATTAAGAAAACGAAAAAAGTAAACAAAATGAGAAAACCATTGAAAAGAATGTACATGGGCCGCCCATCTAGAT
AATACTAATGCCTATTGACGGGGCGTGCATCGGTTAGCAAAATGCAACCTAACCGGT-----------------------
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----------CTTTAAGGCGTCGAATAGCAGTTGGGATTGCCC-------------------------------------
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-------ACACACCGTCCGTGCGAACACAGCCATTCACAAACTCTGA-AAAAGAAATTTTTTAAAAGAAAACACTCTTAA
AACAAAATTCGAATCTCCCTCTACACGTCCCCTCG-CACCAATCACCAATGTCTACAGCGCGCTCCCC-CCATTTC----
CCTCCCCGCCCCGAATCCCGATCCCCTCCAAACATTTCGCGAAAATTTTCAAGATTCGCTTGGCCCTTGGAGCCTCCCGG
CCAAAAATGGCAGGAAACACAGATCCGTCCGCTCCCTCCCACTCCTCTCCG-GCCGAAAATTCCCCCCGAAACTCAAATC
TTTTCATCCTCCTCCCTCTTCT-------TCCCTCCTACCTTCGTTACAAATACCCATGGA----AGATCCTTCCAGTCC
CATCCCAAGCTCCAACCGACTCACCTCGCCGCCCAG------TACCTCGCCGA---------GCCCCAATCCCGAGAGCG
TCAG---------CTCTTCTTCGAG-----ATGGCACTTGACCGCGCCGACAAGGAGAATTTGCCGCCGG---------C
G---GCCGCCGTCGCCCGTCCTCATGG---------CGTGGCTGTCAGGAGCTGCAAGCTGAAGCGGCTCGGGAGGTCGC
GGAGGCGGGTGCCGCTCAGGGACATCACCAACCTCTTCGCCGTGGAGTCAACGGTTGCCCAGTGGCAGCAGGCCCTGCTC
CAGCGGCCGCAGCCGCACGAGGGGT------CGGCGAC---------------GGCGGAGCCGGCCGTGAAGAACGGGCT
GGCCGG---TGCT---G---TGCTGAAGGCCGGCAGATACTCTCTCCGGAAGGAGTTTAGATAGCT-------ACTACCG
AT-TATATATGGATTATACT-----TTTCATTTCATTGT-------CCAATGATTCATTGGACTAGATTGGTTGGTTAGT
CAGTTGG-GTT------TTTTCAGTTCC---TTATTCCTGGTGATAGGAAATGAGCTGCTGAAGTTGAAAGAAAAGAAAG
AGAAACCTCAAATTGAATTCGTATATCGATTAAAGGTGTAGCATACTGAATTGGAATCTGGAACTTTGCTGTAGCCTATT
TTCAGAAATTATACTA-TTTGGAGCTGAGATCTGCTTCTCCAGTTCTCCAGGGGACTGTGTGGCACTCTGAATTATACAA
CAGCTTTCAAGCCACTCCCTTTGCA-----GGCATATAGCATCTGTGCCATTGCTAGGCGATCTCCTGATTGATCGTCAA
TCCAGACGGCCATGGAAAGATGTTGAAACTGCTTCGGTACAACAAGTACTGTGGCTGCGGTAGAGGGA-GCAGGAGGGTG
TGATTTGCATGGCATTCAGCACAATATACCAGTACT--------------------------------------------
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--------------GTGTTTTTGCTCTTCAGTGAGGAACACGAAAAGAATAGATCTGATGCTGATTATGTGAGGCTTCAG
GAGGAAGGAAAGACAGAACAGGCTGGG--AGACTTTGGTTAGGGTGTACGACTGATTT-TTTTTCTACTGTTCTATGGTC
TCCCTTTCTATAGTTTGTTCTGCACATGTACTTTGCAATCATGATGATATTCTCCATCA-----TTTGTCAATACACCAT
GTCAATATCATAACTAGCTAGAAGAAACGGCCTAACATGCTCCCATTTGATTCTTGTGTGCAAGCCCATATTATGAAATG
ATACAATCA--TGTTAGATTCAAGGAAGTTGCGGGTCCGATTCATATTACAGATTTCATATTATACTATCTGTCGTTCCT
GAAGTACTAAAAAATAGAAAATGGTGCATTTTCCTCTAATTCATCATTCTA-TTTTTTTTTGTACCTC--AGATTTATGG
GGTTATCATATATTTCATAGAATGGTTTTCACCGTGGTTGCTGTTTTGTATC
>chr5D_2
-AAAAAGTTCATGAGTTCC--AAAAATCATGGGGTTCAAAAAAATCGCAGATTAGAAAGAAGATCACATTTCAGTAAAAA
AAAGTTTAATTGTTTTGGAAAAAGTACATAAAATTTGGGAAAAATAAAAAAATTGGAGGAGAGATCATGAGTTTTAATAA
CATTCACTTGGAAAAATTTGCAAAAATGAAAAAAAATAAGGTCATTAATATGAAAAAAGTTCACAACTAAGATTTAAAAA
AGTTCACGAAATTTGGGAAATTTTGACAGATTTGAAATAAAAAAGTTCACAAAAATTGAAAATAA---------------
-----------AACTGGGAAAAGTCTATGAATGAAAAATGTAAAAAGAATTAAAAAATATTAAGAAAATCAAACGAAAAA
GAAAGAAAGCAAGAAAACGAAAA----AAACAAAATGAGAAAACTGGTGAAAAGAATCTACATGGGCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCTTTAAGGCGTCAAATAGCAGTTGGGATTGCCCACACCGGGAAAATATCAGATGCTCCTATCCTTGGTGT
GCTCCCTATGCTCCAAGTCTAAAACATTAAATTTAAATGTCTCAAAATTTCTGAAAAAATTTGTGAATGTTCAAAAGGAA
AGTGACTACACCCCCTAAAAATTTCAGGTCCAAAATCGAAATGTACATTGAGAATAAAAAAGACAAATTCAGATATAAAT
AGTGTCAAATGTTGCTTTTGTCTTTTTATGACATTATTCATGCTAGATTTTACATTTTTGTTTCTCAAAGTGCATTTAGA
GTTTGGACCTGAAATTTTTAGGAGTTGTAGTCACAGAATTCAGAAATTCCTTGTAAACATGCATATATTTTTCCAGAATT
TTTTGAAACATTTAAAATTGATTTATTTGAAGTTGGAGCATGGGGAGCACCCTAAGGATGAGAGTACTGGATATTTCCCC
ACACCCCACACCCCGCCCGTGCGAACACAGCCATTCACAAACTCTGA-AAAAAATGTCT----CAAAAAAATACTCTGTT
TTT----TTTTAATCTCCCTCCACACGTTCCCTCG-CACCAA-------TGTTTACAGCGCGCTCCCC-CATTTCCAT--
--TCGCCGCCCCGAATCCCGATCTCCTCCAAACATTTCGCGAAAATTTTCAAGATTCGCCTGGCTCTTGGAGCCTTCCGC
CCAAAATCGGCAGGAAACACAGATCCGTCCGCTCCCTCCCACTCCTCTCCG-GCGGAAATTTTCCCCCGAAACTCAAATC
TTTTCATCCTCCTCCCTCTTCT-------TCCCTCTTACCTTCGTTACAAATACCCATGGA----AGATCCTTCCAGTCC
CATCCCAAGCTCCAACCGACTCACCTCGCCGCCTAG------TACATCGCCGA---------ACCCCAATCCCGAGAGCG
GCAG---------CTCTTCTTCGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATTTGCCGCCAG---------C
G---GCCGCCGTCGCCCATCCTCATGG---------CGTGGCTGTCAGGAGCTTCAAGCTGAAGCGGCTCGGCAGGTCGC
GGAGGCGGGTGCCGCTCAGAGACATCACCAACCTCTTCGCCGTGGAGTCCGCGGTTGCCCAGTGGCAGCAGGCCCTGCTC
CAGCAGCCGCAGCCGCACGAGGGGT------CGGCGAC---------------GGCGGAGCCGGCCGTGAAGAACGGGCT
GGCCGG---TGCT---G---TGCTGAAGGCCGGCAGATACTCTCTCCGGAAGGAGTTTAGATAGCT-------ACCGAT-
-TATATAT--GGATTATACT-----GTTCATTTCATTGT-------CCAATGATTCATTGGACTACATTGGTTAGTTAGT
TAGTTGGTTTT------TT--CAGTTCCTTATTATTCCTGGTGATAGGAAATGAGCTGCTGAAGCTGAAAGAAAAGAAAG
AGAAACCTCAAACTGAATTCGTAGATCGATTAAAGGTGTAGCATACTGAATTGGAATCTGGAACTTTGCAGTA-------
TTCAGAAATTATACTA-TTTGGAGCTGAGATCTGCTTCTCCAGTTCTCCAGG--ACTACGTGGCACTCTGAATTATGGAA
CAACTTTCAAGCCACTTCCTTTGCA-----GGCATATAGCATCTGTGCCATTGCTAGGCGATCTCCTGATTGATCGTCAA
TCCAGACGGGCATGGAAAGATGTTGAAACTGCTTCGGTACAACATGTACTGTGGCTGCGGTAGAGGGA------------
------GCATGGCATTCAGCACAATATACCAGTACAGTTTCGTTGTAGTCTCAGTGATTTCAGGTGTACTTGAGTCTAGC
GAAATTTTCTTGTGCTGTTTGGGTAGCATATTTATTCAGTCAACTCAAACGGTTTTATTTTTGCTGGAAATTTAAAGGGC
ATTAGGAAGAATACAAAGTTGAAGGGATACATCTGACTATCCCAGAATGGCAGCA-TGAGATAGCTTAGTTCTGTTTAAC
AGGATCTGCTTTGTGTTTCTGAAACAGTGCTATAAACTAAGAA--CATGTTTTAACAGGATCCAGTCTTGACTATGCTGC
TTAACAGGCATATGGTGTTTTTGCTCTTCAGTGAGGAACACGAAAAGAATAGATCTGATGCTGATTATGTGAGGCTTCAG
GAGGAAGGAAAGACAGAACAGGCTGGAAAAGACTTTGGTTAGGGTGTACGACTGC--T-TTTTTCTACTGTTCTCTGGTC
TCCCTTTCTATAGTTTGCTCTGTACTTGTACTTTGCAATCATGATGATATTTTCCATCATATTTTTTGTCAATACGCCAT
GTCAATATCATAACTAGCTAGAAGAAACGGCCTAACATGCTCCCATTTGATTCTTGTGTGCAAGCCCATGTTATGAAATG
ATACAATCA--TGTTAGATTCAAGGAAGTTGCTGGTCCGATTCATATTACAGATTTCATTTTATACTATCTGTCGTTCCT
GAACTACTAAAAAATAGAAAATGGCGCATTTTCCTCTAATTCATCATTCTA-TTTTTTGTTGTACCTCAAAGATTTATGA
GGTTACCATATATTTCATAGAATGATTTTCACTGTGGTTGCTGTTTTGTATC
>chr5B_537
GGATTTGCCCCA--------------------------------------------------------------------
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-------ACACACCGTCCGTGCGAACGCAGCCATTCACAAACTCTGGGAAAAAAAGTCT----AAAAAAAACTCTCTGAA
AAGAAAATTCGAATCTCCCTCCACACGTCCCCTCG-CACCAATGTT---TGTTTACAGCGCGCTCCCC-CATTTCCCTCC
CT--CCCGCCCCGAATCCCGATCTCCACCAAACATTTCGCGAAATTTTTCAAGATTCGCTTGGCTCTTGGAGCCTTCCGG
CCAAAAATGGCAGGAAACGCAGATCCGTTCGCTCCTTCCCACTCCTCTCCA-GCGGAAAATTTCCCCCGAAACTCAAATC
TTTTCATCCTCCTCCCTCTTCT-------TCCCTCTTCCCTTCGTTACAAATACCCATGGA----AGATCCTTCCAGTCC
CATCCCAAGCTCCAACCGACTCACCTCGCGGCCTAG------TACCTCGCCGA---------GCCCCAGTCCCGAGGGCG
GCAG---------CTCTTCTTCGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATTTGCCGCCAG---------C
G---GCCGCCGTCGCCTGTCCTCATGG---------CGTGGCTGTCAGGAGCTGCAAGCTGAAGCGGCTCGGCAGGTCGC
GGAGGCGGGTGCCGCTCAGGGACATCACCAACCTCTTCGCCGTGGAGTCCGCGGTTGCCCAGTGGCAGCAGGCCCTGCTC
CAGCAGCCGC------GCGAGGGGT------CGGCGAC---------------GGCAGAGCCGGCCGTGAAGAACGGGCT
GGCCGG---TCCT---G---TGCTGAAGGCCGGCAGATACTCTCTCCGGAAGGAGTTTAGATAGCT-------ACCGAT-
-TATATATATGGATTATACT-----TTTCATTTCATTGT-------CCAATGATTCATTGGACTAGATTTGTTGGTTAGT
TAGCTGTTGTT------TTTTCAGCTCC---TTATTCCTGGTGATAGGAAATGAGCTGCTGAAGCTGAAAGAAAAGAAAG
AGAAACCTCAAACTGAATTC-----------------GTAGCATATTGAATTGGAATCTGGAACTTTGCAGTAGCCTATT
TTCAGAAATTATACTATTTTGGAGCTGAGATCTGCTTCTCCAGTTCTCCAGG--ACTGCGTGGCACTCTGAATTATAGAA
CAGCTTTCAAGCCACTCCCTTTGCA-----GGCATATAGCATCTGTGCCATCGCTAGGCGATCTCCTGATTGATCGTCAA
TCCAGACGGGCATGGAAAGATGTTGAAACTGCTTCGGTACAACAAGTACTGTGGCTGCGGTAGAGGGA-GCAGGAGGGTA
TGATTTGTATGCCATTCAGCACAATATACCAGTATAGTT-------------AGTGATTTCAGGTGGACTTGAGTCTAGC
AAAATTTTCTTGTGCTGTTTGGGTAGCATGTTTATTCAGTCAACTCAAACGGTTTTATTTTTGCTGACAACTTAAAGGGC
ATTAGGAAGATTACAAAGTTGAAGGGATACATCTGACTATCCCAGAATGGTAGCATTGAGATAGCTTAGTTCTGTTTAAC
AGGATCTGCTTTGT--TTCTGAAACAGTGCTATAAACTAAGAA--CATTTTTTAACAGGATCCAGTCTTGACTATCCTCC
TTAACAGGCATATAGTGTTTTTGCTCTTCAGTGAGGAACACGAAAAGAATAGATCTGATGCTGATTATGTGAGGCTTCAG
GAGGAAGGAAAGACAGAACAGGCTGGGAAAGGCTTTGGTTAGGGTGTACGACTG---A-TTTTTCTACTGTTCTCTGGTC
TCCCTTTCTACAGTTTGTTCTGTAGTTGTACTTTGCAATCATGATGATATTTTCCATCATA-TTTTTGTCAATACACCAT
GCCAATATCATAACTAGCTAGAAGAAACGGCCTAACATGCTCCCGTTTGATTCTTGTGTGCAAGCCCATATTATGAAATG
ATATAATCATGTGTTAGATTCAAGGAAGTTGCTGGTCCGATTCATATTACAGATTTCATATTATACTATCTGTCGTTCCT
CAAGTACTAAAAAATAGAAAATGGTTCATTTTCCTCTAATTCATCATTCTA-TTTTTTGTTGTACCTCAAAGATTTATGA
GGTTATCATATATTTCATAGAATGGTTTTCACCGTGGTTGCTGTTTTGTATC
>chr7A_616
AAAAC---------------------------------------------------------------------------
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-----AATTCGAATCTCCCTCCCCCCGTCCCCCCCACACCAA-------TGTTTTCAGCGCGCTCCCCGCACTTCCCTCC
CCTCCGCGCCCCGAATTCCGATTTCCTCCAAACATTTCGCGAAAATTTTCAAGATTCGATTGGCTCTTGGAGCCTTCCGG
CCAAAAATGGCAGGAAACACAGATCCGTCTGCTCCCTCC-ACTCCTCTCCACGCCGAAATTTTCCCCGGAAACTCAAATC
TTTTCATCCTCCGCCCTCTTCT-------TCCCTCCTACCTCCGTTACAAATACCCATGGA----AGATCCTTCCTGTCC
CATCCCAAGCTCCAACCCAGCCACCGCGCCGCCTAG------TACATCGTCGA---------GCCCCAACCCCGAGAGCG
GCAG---------CTCTTCTTCGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATCTGCCGCCGG---------C
G---GCCGCCGTTGCCCGTCCTCATGG---------CGTAGCTGTCAGGAGCTGCAAGCTGAAGCGGCTCGGGAGGGCGC
GGAGGCGGGTGCCGCTCAGGGACATCACCAACCTCTTCGTCGTGGAGTCCGCGGTTGCCCAGTGGCAGCAGGCCCTGATC
CAGCAGCCGC------ACGAGGGGT------TGGCGACGACGGAGCTGGGCAAGGCAGAGCCGGCCGTGAAGAACGGGCT
GGCCGGAGGTGCT---G---TACTGAAGGCCGGCAGATACTCCCTCCGGAAGGATTTTAGATAGCT-------ACCGAA-
-TATATAT--GGATTATACT-----GTACTTTTCTTTTCATTTGTCCAAATGATTCATTGGACTAGATTGGTTGGTTAGT
T-----G-GTT------TTTTCAGTTCT---GTATTCCTGATGATAGGAAATGAGCT------GCTGAAAGCAAAGAAAG
AGAAATCTCAAATCGAATTCGTATATCGATTAAAGGTGTAGCATACTGAATTGGAATCTGGA------------------
-----------TACTA-TTTGGAGCTGAGATCTGCTTCTCCAGTTCTCCAGG--ACTATGGTAT--TCTGCATTACAGAA
CAGCTTTCAAGCCACTCCCTTTGCA-----G-----TAGCATCTGTGCCATTGCTAGGCGATCTCCTGATTGATCGTCAA
TCCAGACGGGCATGGAAAGATGTTGAAACTGCTTCGGCACAACAAGTACTGTGGCTGTGGTAGAGGGA-GCAGGAGGGTA
TGATTTGCATGGCATTCAGCACACTATATCAGTA----------------------------------------------
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>chr6D_692
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CCTCCCCGCCTCTAATCCCGATTTCCTCCAAACATTTCGCGAAATTTTCCAAGATTCGCA-GGCTGTTGGAGCCTTCCGA
CCAAAAATGGCAGGAAACGCAGATCC-TCCGCTCCCT-CCACTCCTCTCCA-GCCCAAAATTTCCCCTGAAACTCAAATC
TTTTCACCCCCCTC---CCTCCCATTCCCTCCTACCTACCTCCGCTACAAGTACCC----ATGGAAGATCTTCCCAGTCC
CATCC---GCTCCGATCCAGCCACCTCGCCGCCTAGGCCTAGCACAGCACCGT---------GCCCAGATTCCCAGAGCG
GCAG---------CTCTTCTCTTCTCTGATATGGCAGTTGACCGCGCCGACAAGGAGAATCTGCCGCCTG---------C
GTCGGCGGCCGCCGCCCGTCCTCATGG---------CGTGGCCGTCAGGAGCTGCAAGCTGAAGCGGCTCGGGAGGGCGC
AGAGGCGGGTGCCGCTCAGGGACATCACCAACCTCTTCGTTGCCGAGTTGGCGGTCGCTGAGTGGCAGCAGGCCCTGCTC
CAACAGCCGC------ACGAGGGGT------CGGCGGC---------------GGCGGAGCTGGCCGTCAAGAACGGGCC
TGCCGGTGGTGCG---G---CTCTGAAGCCTGGCAGATACTTGCTCCGGAAGGAGTTTAGATAGCT-------ACCAAT-
-TGTACAT--GGATTATACT-----TCTTATGTCATTGT-------CCAATGATTCGTTGGACAAGATTTGGTTGG----
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>chr7D_696
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----CCCGCCCCGAATCCCGATTTCCTCCAAACATTTCGCGAAATTTTTGAAGATTTGCTTGGCTCTTGGAGCCTTCCTG
CCAAAAATGGCAGGAAACACAGATCCGTCAGCTCCCTCCCACTCCTCT----------------CCCCGAAACTCAAATC
TTTTCATCCTCCTC---CTTCT-------TCCCTCCTACCTTCGTTACAAATACCCATGGATGGAAGATCCTTCCAGTCC
CATCCCAAGCTCCAACCGAGCCACCTCGCCGCCTAG------TACAGCACCGA---------GCCCGGACTCAGAGAGCG
GCAG---------ATCTTCTTCGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATCTGCTGCCAGCGACCACCCC
GACGGCCGCCGTCGCCCGTCCTCATGGGAGTCATGGCGTAGCTGTCAGGAGCTGCAATCTGAAGCGGCTCGGGAGGGCGC
GGAGGCGGGTGCCGCTCAGGGACATCACCAACCTCTTCGTCGTGGAGTCCGCGGTTGCCCAGTGGCAGCAGGCCCTGCTC
CAGCAGCCGA------GCGAGGGGT------CGGCGACGGCAGAGCTGGAGAAGGCAGAGCCGGCCGTGAAGAAAGGGCT
GTCCGGTGGTGTT---G---CACTGAAGGCCGGCAGATACTCGCTCCGGAAGGAGTTTAGATAGCT-------ACCGAT-
-TATATAT--GGATTATACT-----TTTCATTTCATTGT-------CCAATGATTCATTGGACTAGATTGGTTTGTTTGT
T-----G-GTT------TTTTCAGTTCC---GTATTCCTGACGATAGGAAATGAGCT------GCTGAAAGAAAAGAAAG
AGAAAACTCAAAATGGATGCTTACATCGATTAAAGGTGTGGCATACTGAATTGGAATCTGGAACTTTGCAGTAACCTATT
TTAAGAAATTATACTA-TTTGGAGCTGGGATCTGCCTCTACAGTTCTCCAGG--ACTGTGGTGT--TCTGCATTACAGAA
CAGCTTTCAAGCCACTCCCTTTGCAGTATTG-----TAGCATCTGTGCAATTGCTAGGCGATCTGCTGATTGATCGTCAA
TCCAGACGGGAATGGAAGGATGTTGAAACTGCTTCGGTGCAACAATTACTGTGGATGCGGTAGAGGGAGGCAGGAGGGAA
TGATTTGCATGGCATTCAGCACAATATACCAGTA----------------------------------------------
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>chr6B_725
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---------------------------------ATTTCGCGAAAATTTTCAAGATTCGCC-GGCTCTTGGAGCCTTCCGA
CCAAAAATGGCAGGAAACGCAAATCC-------------------TCTCCA-GCCCCAAATTTCCCCCGAAACTCAAATC
TTTTCATCCCCCTC---CCTCTCGTTCCCTCCTACCTACCTCTGCTACAAGTACCC----ATGGAAGATCTTCCCAGTCC
CATCCCAAGCTCCGACCCAGCCACCTCGCCGCCTAG------CACAGCACCAGCACCGTGCCGGCCGGATTCCAAGAGCG
GCAGGCAGCACTTCTCTTCTCCGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATCTGCCGCCTG---------C
GACCGCCGCCGTCGCCCGTCCTCATGG---------CATGGCCGTCAAGAGCTGCAAGCTGAAGCGGCTCGTGAGGGCGC
GGAGGCGGGTGCCGCTCAGGGACATCACCAACCTCTTCGTTGCTGAGTCCGCGGTCGCCGAGTGGCAGCAGGCCCTGCTC
CAGCGGCCGCA------CGAGGCGTCGGCAGCGGCGCC---------------GGCGGAGCTGGCCGTGAAGAACGGGCC
TGCCGGCTGTGCG---C---TACTGAAGCCTGGCAGATACTTGCTCCGGAAGGACTTTAGATAGCT-------ACCTAT-
-TGTACAT--GGATTATACTGCACTTCTCATCTCATTGT-------CCAATTATTCATTGGACAAGAATTGGTTGG----
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>chr6D_832
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------------------------------------------TCCTCC----------------GCCGAAAACTCAAATC
TTTTCATCCCCCTC---CCTCTCGTTCCCTCC-TCCTACCTCCGCTACAAGTACCC----ATGGAAGATCTTCCCAATCC
CATCCCAAGCTCCAACCCAGCCACCTCGCCGCCTAGGCCTAC-------CCATCACCGTGCCGGCCGGATTCCGAGAGCG
GCAGGCAGTTCTTCTCTTCCCCGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATCTGCCGCCGG---------C
GACCGCCGCCGTCGCCCGTCCTCATGG---------CGTGGCTGTCAAGAGCTGCAAGCTGAAGCGGCTCGGGAGGGTGC
GGAGGCGGGTGCCGTTGAGGGACATCACCAACCTCTTCGGTGCAGAGTCCGCGGTCGCCGAGTGGCAGCAGGCCCTGCTC
CAGCGGCCGC------ACGAGGCGTCGTCGGCGGCGCCGGCCGAGCTGG---------------CCGTGAAGAACGGGCC
TGCC---GGCGGT---GCGCTACTGAAGCCTGGCAGATACTTGCTCCGGAAGGACTTTAGATAGCT-------ACTACCG
AT-TGTACATGGATTATACG-----TCTCATATCATTGT-------CCAATGATTCGTTGGGCAAGATTTGGTTGG----
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>chr6B_832
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------------------------------------------TCCTCC----------------GCCGAAAACTCAAATC
TTTTCACCCCCCTC---CCTCTCGCTCCCTCC----TGCCTCCGCTACAAATACCC----ATGGAAGATCTTCCCAGTCC
AATCCCAAGCACCAACCCAGCCACCTCGCCGCCTAG------CACAGCACCAGCACCGAGC---CCAGATTCCCAGAGCG
GCAG----CTCTTCTCTTCTCTGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATCTGCCGCCTG---------C
GACCGCCGCCGTCGCCCGTCCTCATGG---------CATGGCCGTCAAGAGCTGCAAGCTGAAGCGGCTCGGGAGGGCGC
GGATGCGGGTGCCGCTCAAGGACATCAGTAACCTCATCGTTGCCGAGCCGGCGGTCGCCGAGTGGCAGCAGGCCCTGCTC
CAGCAGCCGCATT------ACGGGC------CGCCGGCGGCGGAGCTGG---------------CCGTGAAGAACAGGCC
TGCC---GGTGGT---GCGGCACTGAAACCTGGCAGATACTTGCTCCGGAAGGAGTTTAGATAGTT-------AAAGATT
GTATATAT--GGATTATACT-----TCTCATCTCATTGT-------CCAACTATTCATTGGACAAGATTTGGTTGG----
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>chr7B_838
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-------------------------------------------------------------------CGAAACTCAAATC
TTTTCATCCTCCTC---CCTCTTCTTCCCTCC----TACCTTCGTTACAAATACCC----ATGGAAGATCCTTCCAGTCC
CATCCCAAGCTCCAACCCAGCCACCGCGCCGCCT-G------TACAGCACCGA---------GCCCGGACCCCGAGAGCG
GCAG---------ATCTTCTTCGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATCTGCCGCCAGCGACCGCCCC
GGCGGCCGCCGTCGTCCGTCCTCATGG---------CGTAGCTGTCAGGAGCTGCAAGCTGAAGCGGCTCGGGAGGGCGC
GGAGGAGGGTGCCTCTCAGAGACATCACCAATCTCTTCGTGGTGGAGTCCGCGGTTGCCGAGTGGCAGCAGGCCCTGCTC
CAGCAGCCGC------ACGAGGGGT------CGGCGACGGCAGAGCTGGGGAAGGCAGAGCCGGCCGTGAAGAACGGGCT
GGCCGGTGGTGCT---G---TACTGAAGGCCGGCAGATACTCGCTCCGGAAGGAGTTTAGATAGCT-------GCCGAT-
-TATATAT--GGATTATACT-----TTTCATTTCATTGT-------CCAATGATTCATTGGACTAGATTGGTTTGTTTGT
T-----G-GTT------TTTTCAGATCC---GTATTCCTGACGATAGGAAATGAGCT------GCTGAGAGAAAAGAAAG
AGAAAACTCGAAATGAATGCTTATATCGATTAAAGGTGTGGCATACTGAATTGGAATCTGGAACTTTGCAGTGACCTATT
TTAAGAAATTATACTA-TTTGGAGCTGATATCTGCTTCTACAGTTCTCCAGG--ACTATGGTGT--TCTGCATTACAGAA
CAGCTTTCAAACCACTCCCTTTGCAGGCTTG-----TAGCATCTGTGCAATTGCTAGGTGATCTGCTGATTGATCGTCAA
TCCAGACGGGCATGGAAAGATGGTGGAACTGCCTCGGTACAACAAGTACTGTGGCTGCGGTAGAGGGAG-CAGGAGGGTA
TGATTTGCATGACATTCAGCACAAGATACCAGTA----------------------------------------------
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>chr6A_878
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----------------------------------CCTATCTCCGCTACAAGTACCC----ATGGAAGATCTTCCCAGTAC
CATCACAAGCTCCAACCCAGCCAACTCACC---TAG------CACAGCACCAGCACCGAGCCGGCTGGATTCCGATAGCA
GCAGGCACCTCTTCTCTTCTCCGAG-----ATGGCAGTTGACCGCGCCGACAAGGAGAATATGCCGCCGG---------C
GACCGCCGCCGTCGCCCGTCCTCATGG---------CGTGGCCGTCAAGAGCTGCAAGCTGAAGCGGCTCGGGAGGGCGC
GGAGGCGGGTGCCGCTCAGGGACATCACCAACCTCTTCGTTGCCGAGTCGGCGGTCGCCGAGTGGCAGCAGGCCCTGCTC
CAGCAGTCGC------ACGAGGGGT------CGGCGGCGGCGGAGCTGG---------------CCGTGAAGAACGGGCC
TGCC---GGTGTCGTGG---TACTGAAGCCTGGCAGATACGTGCTCCGGAAAGAGTTTAGATAGCTACTTACTACCGAT-
-TGTACAT--GGATTATACT-----TCTCATCTCGTTGT-------CCAATGATTCGTTGGACGAGATTTGGTTGG----
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>chr4B_1198
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--------GCAGCCGCACGAGGGGT------CGGCAACGGCGGAGCCGG---------------CCATGAAGAACGGGCT
GGCC---GGTGCT---G---TACTGAAGGCCGGCAGATACTCTCTCCGGAAGGAGTTTAGATAGCT-------ACCGAT-
-TATATAT--GGATTATACT-----TTTCATTTCATTGT-------CCAATGATTCATTGGACTAGATTGGTTGGTTAGT
T-----A-GTT-GGTTTTTTTTAGTTCCTTATTATTCCTGGTGATAGAAAGTGAGCC------GCTGAAAGAAAAGAAAG
AGAAACCTCAAATAGAATTCGTATATCGATTAAAGGTGTAGCATACTGAATTGGAATCTGGAACTTTGCAGTAACCTATT
TTCAGAAATTATTCTA-TTTGGATCTGAGATCTGCTTCTCCAGTTCTCCAGG--ACTGTGTGGCACTCTGAATTATAGGA
CAGCTTTCAAGCCACTCCCTTTGCAG-----GCATATAGCATCTGTGCCATTGCTAGGCGATCTCCTGATTGATCGTCAA
TCAAGACGGGCATGGAAAGATGTTGAAACTGCTGCGGTACAACAAGTACCGTGGCTGCGGTAGAGGGAG-CAGGAGGGTA
TGATTTGCATGGCATTCAGCACATTATACCAGTACAGTTTCGTTGTAGTCTCAGTGATTTCAGGTGTACTTGAGTCTAGC
AAAAATTTCTTGTGCTGTTTGGGTAGCATGTTTATTCAGTCAACTCAAACGGTTTTATTTTTGCTGACAATTTAAAGGGC
ATTAGGAAGATTTCAAAGTTGAAGGGATACATCTGACTATCCCAGAATGGCAGCATTGAGATAGCTTTGTTCTGTTTAAC
AGGATCTGCTTTGT--TTATGAAACAGTGCTATAAACTAAGAAAACATGTTTTAACAGGATCCAGTCTTGACTATGCTCC
TTAACAGGCATATAGTGTTTTTGCTCTTCAGTGAGGAACACGAAAAGAATAGATCTGATGCTGATTGTGTGAGGCTTCAG
GACGAAGGAAAGACATAACAGGCTGGGAAAGACTTTGGTTAGGGTGTACGACTG---T-TTTTTCTACTGTTCTCTGGAC
TCCCTTTCTGTAGTTTGTTTTGTACTTGTACTTTGCAATCATGATGATATTTTCCATCATA-TTTTTGTCAATACACCAT
GTCAATATCATAACTAGCTAGAAGAAACGGCCTAACATGCTCCCATTTGATTCTTGTGTGCAAGCCCATAATATGAAATG
ATACAATCA--TGTTAGATTCAAGGAAGTTGCTGGTCCGATTCATATTACAGATTTCATATTATACTATCTGCCGTTCCT
CAAGTACTAAAAAATAGAAAATGGTGCATTTTCCTCTAATTCATCATTCTA-TTTTTA-TTGTACCTCAAAGATTTATGA
GGTTATCATATA----------------------------------------
>chr4A_1198
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--------GCAGCCGCACGAGGGGT------CGGCAACGGCGGAGCCGG---------------CCGTGAAGAACGGGCT
GGCC---GGTGCT---G---TACTGAAGGCCGGCACATACTCTCTCCGGAAGGAGTTTAGATAGCT-------ACCGAT-
-TATATAT--GGATTATG-----CTTTTCATTTCATTGT-------CCAATGATTCATTGGACTAGATTGGTTGGTTAGT
T-----A-GTTGGGTTTTTTTCAGTTCCTTATTATTCCTGGTGATAGAAAGTCAGCC------GCTGAAAGAAAAGAAAG
AGAAACCTCAAATAGAATTCGTATATCGATTAAAGGTGTAGCATACTGAATTGGAATCTGGAACTTTGCAGTAACCTATT
TTCAGAAATTATTCTA-TTTGGAGCTGAGATCTGCTTCTCCAGTTCTCCAGG--ACTATGTGGCACTCTGAATTATAGGA
CAGCTTTCAAGCCACTCCCTTTGCAG-----GCATATAGCATCTGTGCCATTGCTAGGCGATCTCCTGATTGATCGTCAA
TCCAGACGGGCATGGAAAGATGTTGAAACTGCTGCAGTACAACAAGTACCGTGGCTGCGCTAGAGGGAG-CAGGAGGGTA
TGATTTGCATGGCATTCAGCACATTATACCAGTACAGTTTCGTTGTAGTCTCAGTGATTTTAGGTGTACTTGAGTCTAGC
AAAAATTTCTTGTGCTGTTTGGGTAGCATGTTTATTCAATCAACTCAAACGGTTTTATTTTTGCTGACAATTTAAAGGGC
ATTCGGAAGATTTCAAAGTTGAAGGGATAGATCTGACTATCCCAGAATGGCAGCATTGAGATAGCTTTGTTCTATTTAAC
AGGATCTGCTTTGT--TTCTGAAACAGTGCTATAAACTAAGAAAACATGTTTTAACAGGATCCAGTCTTGACTATGCTCC
TTAACAGGCATATAGTGTTTTTGCTCTTCAGTGAGGAACACGAAAAGAATAGATCTGATGCTGATTGTGTGAGGCTTCAG
GAGGAAGGAAAGACATAACATGCTGGGAAAGACTTTGGTTAGGGTGTACGCCTG---TTTTTTTCTACTGTTCTCTGGAC
TCCCTTTCTGTAGTTTGTTCTGTACTTGTACTTTGCAATCATGATGATATTTTCCATCATA-TTTTTGTCAATACACCAT
GTCAATATCATAACTAGCTAGAAGAAACGGCCTAACATGCTCCCATTTGATTCTTGTGTGCAAGCCCATAATATGAAATG
ATACAATCA--TGTTAGATTCAAGGAAGTTGCTGGTCCGATTCATATTACAGATTTCATATTATACTATCTGTCGTTCCT
CAAGTACTAAAAAATAGAAAATGGTGCATTTTCCTCTAATTCATCATTCTATTTTTTA-TTGTACCTCAAAGATTTATGA
GGTTATCATATA----------------------------------------
>SNPs
-------------S----SSS-------S-------S------S------------------------------------
------S----S----S------S--------------S----S----------------S--S------S---S-----
-------S-------SS---S----S---------S--------SS----SS---------S------------------
-------S------------SS-S--S--------S--S-------------------S----S-SSSSSSSSSSSSSSS
SSSSSSSSSSS--S-------S--SS------S----SSSS---------------------------------------
--------SS-------------SSSS-----------------SSS----------S---------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
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----------------------S---------------------------------------------------------
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----------------------------------------------------S--S-S-SSSS---S----------S--
--S------------------S---------------------SSSSSS---S-----------------SS--S-----
-----------------------S----------------------------------------S----------S----
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
S-----------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------SS-----------------------------
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S---------------------------------------------------------------S---------------
---------------------------------------------------------------------S----------
----------------------------------------------------SS-----------------------S--
--------------------------------------------------------------------------------
---------S---------------------------------------------------------------------S
-----------------------------------S--------------------------------------------
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------------------------------------------------------SSS-----------------S-----
----------------------S--S-------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
----------------------------------------------------------S--------------------S
----------------------------------------------------
>forward_1503
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-------------------------------------------TCCTCTCCGGCCGAAAATTC-----------------
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>reverse_2560
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-------------------------------------------------------------------------------G
TGATTTGCATGGCATTCAGC------------------------------------------------------------
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----------------------------------------------------
