>input_sequence_84458
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--ATGGCTAGGACAACGGCGGTGTCGGTGTGGGCGCTGGTCATAGCGGTGGTGGTGGCGGGTGCGATGGCGACAGATCCA
CGGTGCCCCCCGAAAAAGCTTTTACCTTGCAATCCAGAGGTCAAGGAAGGTAAGGAGGAGCCCTCGGCGTTGTGTTGCTC
GAACCTCCGGGCGCAAGAAGGGTGCCTCTGCCTGTACTTGCACGATCCGAGCTACCAGCGCTACTTCGGGGGCGCCGAAC
CCCGCAAGACAATCACCTCCTGTGGCATCCCCATTCCATATTGTTTATCAACTACAAATATATAG---------------
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-
>chr2D_1_TraesCS2D01G510800
TAATCCTCCTTTTTTAAAAAAGGAAAAAAA----TACGCCACTGGATAATCCTAGCTTGATTAACAAGAAAAAACTGAAT
GAGGAAAACTATGGC-TGTGGGTGTTACGAAGGGCTACTTGAGATTTAGACATACC-AAATGGTAAGAAATAAATAAAAG
GAAATAAAAAAA--TTATCAAGTGTTTTTCTCGGACACTTGACAAAGATGCATCATTACCAAGTGCTTTTGTTTTGCCGA
GTGTAACACTAGGCAAACCGCGAGACTATCTAGTGCCATTTTTCGCCAAGTGTATTTTCAAAAGCACTCGACAATGACCA
TGTTTGCCGAATGCCAGTGGGAAGACATGCGGCACATGGCAAAGAAGCATTTTCCCATAGTGTGCAGCATTTGCAATACG
TATCTTGCATTTTCCATCTACCCCTCTCTTTCTCTCAATCTAGGTATTCCTAAAAGAACGAGGTAGAAACATATAATGCC
AAAAA-AAAGGATGCCCATGTGGACTTCAAGGTCTTGTCTTTGTACTTTCGCTGAAATTTCATAATAGATCTTATCCTTT
TCAAAAAAGAAAATTGTAGCCAACCAATCGTAATTATAGGTAC----TAGTCATCAA-----------TCTAATTTGGCA
TGGTATAATGTCAGGGTCAAAATTGGTACTCCCTCCGTCCGGAAATACTTGTCGGAAAAATGGATAAAAATGAATGTATC
TAAAACTAAAATACGTCTAGATACACCCATTCCTCCGACAAGTATTTTCGGACGGAGGGAGTACTATATTAGTAGCCAAT
AATT----------------------------------------------------------------------------
-------------------ATTAATCGAAATGTAATTTGGCATAGTATAATCGCAGGGCCAAAATTGGTACCATATTTAA
TGGATGAAAAACACTGTATC-TTTTGGTGAAGGAGTAAACACTGCCTGCAAATGCCTCGGCCCTGACTATAAATCTGAGC
GACGCGCTTCGCTTCACTTACCTTGCCATACAAACTTGAGAGGCTTTGTG--TTTAGAGAGGAGTTGCCGTTGTTAAAGA
TTATGGCTAGGACAACGGCGGTGTCGGTGTGGGCGCTGGTCATAGCGGTGGTGGTGGCGGGTGCGATGGCGACAGATCCA
CGGTGCCCCCCGAAAAAGCTTTTACCTTGCAATCCAGAGGTCAAGGAAGGTAAGGAGGAGCCCTCGGCGTTGTGTTGCTC
GAACCTCCGGGCGCAAGAAGGGTGCCTCTGCCTGTACTTGCACGATCCGAGCTACCAGCGCTACTTCGGGGGCGCCGAAC
CCCGCAAGACAATCACCTCCTGTGGCATCCCCATTCCATATTGTTTATCAACTACAAATATATAGTGAACAATATGTGTT
AATGTGCCTCTCTTTTGGAATAAATGGGAATTGTTACTCGAGAACATGCCCCTAGTTTGCTTTTTTTAGTCTGTTGTCTT
TTAAAT---------AGGCAAAATTATATGTAAATCTAC---ACAAAGGATTTTTCGTCTACATTGTTCATCTATTTTGT
GGTTTGTGGGTACCCTTTTCCTTTGTGTTGACACGGATTTGGTATAGGTTTATGTTTTACTTTAGACATTTACTAGCACA
TATGTCCGTGCATTGCAAGGAAATTTTTTAATGTTTTGTGCAAGCATAATGTCTCATACTATCTCAAACAAAATCTCATA
GCACCGGATTCACTACGAAGAACATGTTGCAACGCAACATCCTTCTACAAAATGAACATAAAAAATAGGATGCAATTTGG
CCGCGTTCGTA-TTTTC-TCTGCCGGGCATAATCTTCCACTGATTCCATTTAAGTATAATCCTTAAATTAATTACCATGA
CGTCCTCACC-GTTTTAGTCGGGAATC---TCCTTCGTTTTCTTTTT--GAAAGCAAATCCTCCCTTTTCTGATTTAGTA
GCCCCACCACATTGAAGCCTACGGATCCATCCTTTTAATT-ATCCTACC--TTTTTACCTC-AAATCCTTCCTTTAATTA
G--CCCCATCAATTTGAATATATT-CTATTTATTAAGCCCACAATCTTTCTTTT-AATTATTCCATC-GGTTTACCCATA
ATCCTTTCTTTAATTAGTCACATCCGTTTAAATATTCTATCT-AAGCCCACAATCCTTTCT-----------------TT
AATTAGCTCATTCGCTTAATTAGCTCGCCCTAAATATGAGGTCTGCTCTTCTTTGTTTTAACCGT--------CTATTGG
TTGATTCCTA-AGCCGCTCAAATATTTACTGATCGGAACCATTGCAAAAGAGCGAGGTGGGATTAATAAACGTGAAAGAT
GCAGAGCTCGTTGGTTGTTACGTCGAAGAGCCAGACAGGAGGTCCTCTGTTCAATTCCCACAATGTTGATTTATTTTGAC
C
>chr2B_1
TAATCCTCCTTTTTGAAAAAAGGTAAAAAAATATTACGCTGCTGGATAATCCTAGCTTGATTAACAAGAAACAA-TGAAT
GTGGAAAAACTATGGTTGTGGGTGTTACGATGGACTACTTGAGATTTAGACATACCGAAAGGGTAAGAAATAAATAAAAG
AAAATAAAAAAACATTATCAAGTGTTTTTCTCAGACACTCGACAAAGATGCATCATTACCAAATGCTTTTCTTTTTCCGA
GTGTAACACTAGGCAAACCTCGAGGCTATCTAGTGTCATTTTTTGCCAACTGTATTTTCAAAAGCACTCGACAATGACTA
TGTTTGCGGAATGCCCGTGGGAAGACATGCGGCACATGGCAAAGAAGCATTTTCCCGTAATATGCAGCATTTGCAATACG
CATCTTGCATTTTCCATCTTCCCCTCTCTTTCTCGCAATCTAGGT--TCCTAAAAGAACATCGTAGAAACATATAATGCG
AAAAATAAATAGTGCTCATGTTCACGTTGAGGTC-TGTCTTTGTACATTCGGTGAAGTTTTATAATAGATCTGTTCCTTT
TTCAAAAAGAAAATTATAGTCAACCAATCATAATTCTAGGTACTAGCTAGTCATCAATATAAATGCAGTCTAATTTGGCA
TTGTATAATTTCAGGGTCAAAACTGGT-----------------------------------------------------
--------------------------------------------------------------ACTATATCAATAGCCAAT
TAATTATACATAATCAACCAATCCTATTTGCAGGTACTCACTTTTTTTTTGAGTAATGCAGGTGCTCAGCTAAGCTAGTC
ATCCTTATCCAACTAACCAATTAATCGAAATGTAATTTGGCATATTATAATCCCAGGGCCAATACTGGTACCATATTTAA
TGGATGGAAAATACTGTATTTTTTTGGCGAAGGAGTAAAGGCTGCCTGAT-----------------TATTAATCTGAGC
GACGAGCTTGGCTTCACTTACCTTGCCATACAAACTTGAGAGGTTTTGTGTGTTTAGAGAGGATTTGCAGTCATCAAATA
TCATGGCTAGGACAGTGGCGGTGTTGGTGTGGGTGCTGGTCATAGTGGTGGTGGTGGCGGGTGCGATGGCGATAGAGCCA
CAGTGCCCCCCGAAAAAGCTTTTACCTTGCAATCCAGCGGTCAAGAAAGTTA---AGGAGCCCTCGGCGTTGTGTTGCTC
GAACCTCCGGGCGCAAGAAGGATGCCTCTGCCTATACTTGCACGATCCGAGGTACCAGCGCTACTTCGGGGGCGCCGACG
CCGGCAAGACAATCACCTCCTGTGGCATCCCCCTTCCATATTGTTTATCAACTACAAATATATAGTGAACAATATGTGTT
AATGTGCCTCTCTTTTGGAATAAATGGGAATTGTTACTCGAGAACATGCCCCTAGTTTGCTTTC-TTAGTGTGTTGTCTT
TTAATATATTTTTAAAGACAAAATTATATGTGAATCTAATCTACAAGGGATTTATCTTCTATATTGTTCATCTATTTTGT
GGTTTGTGGGCACCCTTTGCCTTTGTGTTGACAAGGTTTTGGTATAGATTTGTGTTTTA---------------------
--------------------------------------------------------------------------------
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>chr2A_781
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-------------------ATTAATCGAAATGTAATTTGGCATAGTATAATCGCAGGGCCAAAATTGGTACCATATTTAA
TGGATGAAAAATAATGTAT-TTTTTGGTGAAGGAGTAAACACTGCCTGCAAATGCCTCGGCCCTAACTATAAATCTGAGC
GACGCGCTTCACTTCACTTACCTTGCCACACAAACTTGAGAGACTTTGAG--TTTAGAGAGGAGTTGCAGTCGTCAAAGA
TCATGGCTAGGACAGTGGCGGTGTTGGTGTGAGTGTTGGTCATAGTGGTGGTGGCGGCGGGTGCGATGGCGACAAAGCCA
CGGTGCCCCCCGAAAAAGCTTTTACCTTGCAATCCAGCGATCAAGAAAGATA---AGGAGCCCTCAGTGTTGTGTTGCTC
GAACCTCCGGGCGCAAGAAGAGTGCCTCTGTCTGTACTTGCACGATCCCAGGTACTAGCGCTACTTTGGGGTCGCCGACA
CCGGCAAGACAATCACCTCCTGCGGCATCCCCCTTCCATATTGTTTATCAACTATAAATATATAGTGAACAATATGTGTT
AATGTACCTCTCTTTTGGAACAATATG-----------------------------------------------------
--------------------------------------------------------------------------------
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-
>chr3D_1538
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-----------------------------------------------------------------------ACTAGCACA
TATGCCCGTAGGTTGCAACAAGAAAATTTAATGTTTTGTGCAAGCATAATG----------------------TCTCACA
ACACCAGATTCACTATGAAAAACATGTTGGAATGCAATGTCCTTCTACAAAATGAACATAAAAAATAGGGTGCAATTTAG
TTGCGTTCATA-TTTTC-TTTACCGGGCACAATCTCCCACTAATTCCATTTAACTATAATCTTTTCATTAATTACCATGA
CGTCCTCACCCGTTTTAATCG----------------------------GGAATCAAATTCTTCCTTTTCTAGTTTAGTA
GCCCCACCACATTGAAGCCTACGAATCCTTCCTTTTAATT-ATCCTATC--TTTTTATCTC-AAATCCTTCCTTTAATTA
G--CCCCATCCATTTGAATATTCTACTATTTATTAATCCCACAATCTTTTTTTTTAATTATTACACG-GGTTTACCCATA
ATCCTTTCTTTAATTAGCCACATCTGTTTAAATATTCTATTT-AAGCCCACAATCCTTCTT-----------------TT
AATTAGCTCATTCACTTAATTAGCTCGCCCTAAACATGAGGACCGCTCTCCTTTGTTTTTACCAT--------CTGTCGG
TTGATTCCTGGGGCCGCTCATATATTTACTGGTGGGAATCGTTGTAAAAGAGCGAGGTGGGATTAGGAAACATGATAGAT
GCATAGGTCGTTGGTTGTTACATC----ATCCAGACAGGAGGTCCTCTGTTCAATTCCCACAATGTTGATTTATTTTGAC
C
>chr4A_1611
--------------------------------------------------------------------------------
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----------------------------------------CAAACATAATG----------------------TCCCATA
GCACTATATTCACTACGAAGAACATGTTGCAACGCAATATCCATCTAGAAAATGAACATAAAAAATAGGATGCAATTTGC
C-ACGTTCATATTTTTC-TCAGCCGGGCATAATCTCTCACTAATTCCATTTAAGTATAATCATTCTACTAATTACCATAA
TGTCCTCACCCATTT--GTCGAGATTCAAATCCTTCGGTT--TTTTT--AAAGGCAAATCCTTCCTTTTCTAATTTAGTA
GCCCCACCACATCGAAGCCTACGGATCCATCCTTTTAACT-ATCCTACT--TTTTA-CCTC-AAATCTTTCCTTTGATTA
A--CCCCATCAATTTGAATATATT-CTATTTATTAAGCCCACAATTTTTCTTTT-AGTTATTCCAGC-AGTTTACCCATA
ATCATTTATTTAATTAGTCACATACATTTAAATATTCTATTT-AAGCCCACAATCCTTTCT-----------------TT
AATTAGCTC-----------------GCCCTAAACAAGAGGTTTGCTCTTCTTTGTTTTAACTAT--------TTGTTGG
TTGATTCCTGGGGACACTCAAATATTTACTGATTGGAATCATTGTAAAAAAGCGAGTTGGGATTAGTAAATGTGAAAGAT
GCATTGCCAATTGGTTGTTACGTTGAAGAGCCGGACAGTAGGTCCTCTGTTCAATTTCCACAATGTTGGTTTATTTTGAC
C
>chr6B_1611
--------------------------------------------------------------------------------
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----------------------------------------CAAACATAATG----------------------TTCCATA
GCACCGGATTCACTACGAAGAACATGTCGCAACACAATATCTGTTTACAAAATGAACATAAAAAATAGGATGCAATTTGC
C-ATGTTCATA-TTTTT-TCTGCCGGACATAATCTCCCATTAATTCCGTTTAAGAATAATCGTTCTATTAATTACCATGA
TGTCCTCACCAGTTT--ATCGAGAATCAAATCCTTCA-TT--TTTTT--AAAGGCAAATCCTTCCTTTTATGATTTAGTA
GCCCCACCACATCGAAGCCTACGGATCCGTTCTTTTAATT-ATCCTACC--ATTTTACCTCAAAATCCTTCCTTTAATTA
G--CCCTATCAATTTGAATATATT-CTATTTATTAAGCCCACAACTTTTCTTTT-AATTATTCCACC-GTTTTCCCCATA
ATCCTTTCTTTAATTAGTCACATCCGTTTAAATATTTTATTT-AAGCCCATAATTCTTTCT-----------------TT
AATTAGCTT-----------------GCCCTAAACATGAGGTCTGCTCTTCTTTGTTTTAACCCT--------CAGTTGG
TTGATTCCTGAGGCCACTGAAATATTTACTGACTGGAATCATTGCA----------------------------------
--------------------------------------------------------------------------------
-
>chr5A_1620
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TCCCATA
GCACCGGATTCACTACGAAGAACATGTTGCAATCCAACATTCTTCTACAAATTGAACATAAAAAATAAGATGCAATTTAG
CCGCGTTCATA-TTTTC-TCTGCCGGGCATAATGTCCCACTAATTCCATTTGAGTATAATCTTTCTATTAATTACCATGA
CGTCCTCATCAGTTTTAGTCGCAAATCAAATCCTTC--GT--TTTTT--AAAGGCAATTCCTTCCTTTTTTGATTTAGTA
GCCCCACCACCTTGAAGCCTACGGATACGTCCTTTTAATT-ATCCTACC--TTTTTATCTC-AAATCTTTTCTTTAATTA
G--CCCCATCCATTTGAATATATT-CTATTTATTAAGTTGACAATCTTTCTTTT-AGTTATTCCACC-GGTTTATCCATA
ATCCTTTCTTTAATTAGTCACATCCATTTAAATATTCTATTT-AAGCCCACAATCCTTTCT-----------------TT
AATTAGCGCATTCGTTTAATTAGCTCACCCTAAACATGATGTCTGCTCTTCATTGTTTTAACCGT--------CCGTTGG
TTGATTCCTGATGCCGATCAAATATTTACTGATCGGAATCATAGTAAAAGAGCGAGGTGAGGTTAGTAAACGTGAAAGAT
GTGTAGCTAGTTGGTTGTTACATCGAAGAGCCAGACAGGAGGCCCTCTGTTCAATTAACACAATGTTGGTTTATTTTGAC
C
>chr4A_1620
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TCCCATA
GCACCAGATTCAGTACGAAGAATAAGCTAGAACACAACATCCTTCTACAAAAAGAACATAAAAA-TAGGATGCGATTTAG
TCGCTTTCATA-TTTTC-TTCGCCGGG----------CACTAATTCCATTTATGTACAATCCTTTCATTAATTACCATGA
TGTCCTCACCCATTCTAGTCC----------------------------GAAATCAAATCCTTCGTTTTCTAATTTAGTA
GCCCCACCTTATCGAAGCCTACGAATCCTTCCTTTTAATC-ATCCTATC--TTTTTACTTC-AAATTTTCCT-TTAATTA
A--CCCCATCTAATTTGA-ATATT-CTATTTATTAAGTCCACGGTCTTTATTTT-AATTATTTAACC-AGTTTACCCATA
ATCCTTTCTTTAATTAACCACATCCATTTAAATATTCTATTT-AAGACCACAATCCTTCCT-----------------TT
AATTAGCTCATTCGCTTAATTAGCTCGCCCTAAACATGAGGGCTGCTCTCCTTTGTTTTAACCGT--------CTATTGG
TTGATTCCTAAGGCCGCTCATATATTTACTGGTGGGAATCATTGTAAAAGAGCGAGGTGGGATTAGTACACGTAAAAGAT
GCATAACTCGTTGGCTATTACATCGAAAAGTTGGACAGGAGGTCGTGTGTTCAATTCCCACAATGTTGATTTATTTTGAC
-
>chr4B_1623
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----------------------------------------------------------------------------CATA
ACACCGGATTCACTACGAAGAACATGTTGCAATGCAATATCCGTCTACAAAATGAACATAAAAAATAGGATGCAATTTGC
C-ACGTTCATA-TTTTC-TATGCTGGGCATAATCTCCCACTAATTCCATTTAAGTATAATCGTTCTATTAATTACCATGA
TGTCCTCACCCGTTT--GTCGAGAATCAAATCCTTCA-TT--TTTTT--AAAGGCAAATTCTTCCTTTTCTCATTTAGCA
GCCCCACCACATCGAAGCCTACGGATCCGTCCTTTTAATT-ATCCTACC--TTTTTACCTC-AAATCCTTCC-TTAATTA
G--CCCCATCAATTTGAATATATT-CTATTTATTAAGCCCACAATTTTTCTTTT-AATTATTCCACT-GATTTACCCATA
ATAATTTCTTTAATTAGTCACATCCGTTTAAATATTCTATTTTAAGCCCGCAATCCTTTCT-------------------
---------------TTAATTAGCTCGCCCTAAACATGAGGTCTGCTCTTCTTTGTTTTAACCGT--------CTGTTGG
TTGATTCCTGGGGCCGCTCAAATGTTTACTGATAGGAATCATTGTAAAAGAGCGAGTTGGGATTAGTAAACGTGAAAGAT
GCATTGCTCGCTGGTTGTTACGCTGAAGAGACGGACAGTAGGTCTTCTGTTCAATTTCCACAATGTTGATTTATTTTGAC
C
>chr7A_1628
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-CACCGGATCCGCTATGAAGAACATGTTGCATCTCAACATCCTTCTACAAAATGAACATAAAAAATAAGATGCAATTTAG
CTGCGTCCATA-TTTTC-TTTGCCGGACATAATCTCCTACTAATTCCATTGAAGTACAATCCTTCCATTCATTAACATGA
CGTGCTCACCCATTTTAGTCG----------------------------GGAATCAAATCCTTCCTTTTCTAATTTAGTA
GCCCCACCACATTGAGGCCTACGGATCCTTCCTTTTAATT-ATCATACC--TTTTTACCTC-AAATTCTTCC-TTTAATT
AGCACCATCT--ATTTGA-ATATT-CTATTTATTAAGCCCATACTCTTTCTTTT-AATTATTCCATAGGTTTTACCCATA
ATCCTTTCTTTAATTAGCCACATTCGTTTAAATATTTTATTT-AAGCCCATGATCCATCCT-----------------TT
AATTAGCTCATTCGCTTAATTAGCTCGCCCTAAACACGAGGACTGCTCTCCTTTGTTTTAACCAT--------TTGTTGG
TTGATTCCTGGGGCCGCTCATATATTTACTGATGGAAATCATTGTAAAAGAGCGAGGTTGGATTAGAAAACATGAAAGAT
GCATAGGTCGTTGGTTGTTACACCATAGATCCAGACAAGAGGTCCTCTGTTTAAAACCCACAATGTTAATTTATTTTGAC
-
>chr3B_1628
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-CACCGGATTCACTACAAAGAACATGTTGCAACGCAACATCTTTCTACAAAATGAACATAAAAAATAGGATGCAATTTAG
CCGCGTTAATA-TTTTC-TTTTCCGGGCATAATCTCTCACTAATTCCATTTAAGTATAATCCTTCCATTAATTACCATGA
CGTCCTCACCCGTTTCAGTCGGGAATCAAATCCTTC--AT--TTTTG-----------------------TAATTTAGTA
GCTCCAC--CATTGAAGCCTACGGATCCTTCATTTTAATT-ATCCTACC--TTTTAACCTC-AAATCCTCCT-TTAATTG
GA------------------------TATTTATTAAGCCCACAATCTTTCTTTT-AATTATTCCACC-AATTTACCCATA
ACCTTGTCTTTAATTAGCAACATTTGTTTATATATTCTATTT-AAGACCACAATCCTTCCT-----------------AT
AATTAGCTCATTCGGTTAACTATTTCGCCCTAAACATGAGGGTTGCTTTCCTTTATTTTAACCAT--------CTGTTGG
TTGATTTCTGAGGCCACACATATTTTTACTGGTGGGAATCATTGTAAAAGAATAAAGTGGGATTAGTAAACATGAAAGAT
GCATGTCTCATTGATTGTTACATCGAAGAGC-------------------------------------------------
-
>chr1D_1632
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-----GGATTCACTATGAAGAACATGTTGCAACGCAACATCCTTCTACAAAATAAACATGAAAAATAGGATGCAATTTAG
CCACATTCATA-TTTTC-TCTGCCGGGCATAATTTCTCACTAATTCCATTTAAGTATAATCCTTCTATTAGTTACCATGA
TGTCCTCACCCGTTTTAGTCGGGAATCAAATCCTTC--GT--TTTTTGGAAAGGCAAATCCTTCCTTTTCTGATTTAGTA
GCCCCACCACATTGAAGCCTACGGATCCGTCCTATTAATTTATCCTACCTTTTTTTACCTC-AAACCCTTCC-TTTAATT
AGCCCCCATCAATTTGAATATATT-CTATTTATTAAGCCTAGACTCTTTATTTT-AATTATTCCACC-GGTTTACCCATA
ATTATTTTTTTAATTAGTCACATCCGTTTAAATATTGTATTT-AAGCCCACAATTCTTCCATTAATTAGCTCATTCGCTT
AATTAGCTC-----------------ACCCTAAATATGAGGTCTACTCTTCTTTGTGTTTAACCGTCTGTTGGTTGTTGG
TTGATTCCAAAGGCCGCTCAAATATTTACTGATCGGAATCATTGTAAAAGAGCGAGGTGGGATTAGTAAACCTGAAAGAT
GCATAACTCGTTGGTTGTTACGTCGA-----CAGACAGGAGGTCCTCTGTTCAATTAACACAATGTTGATTTATTTTGAC
C
>chr2A_1634
--------------------------------------------------------------------------------
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-------ATTCGCTATGAAGAACATGTTGCAACTCAACATCCTTCTACAAAATGAACATAAAAA-TAGTAAGCAATTTAT
CCGCATCCATA-TTTTC-TTTGTCGGGCATAATCTCCCACTAATTTCATTTATGTATAATCCTTCCATTAATTTCCATGA
CGTGCTCACCCATTTTAATTGGGAATCAAATCCTTCA-TG---------------------------TTCTAATTTAGTA
GCCCCACCACATTGAAGCCTATGGATCCTTACTTTTAATT-ATCCTACC--TTTTTACCTC-AAATCCTTCC-TTTAATT
AGCCCCATGT--ATTTGA-ATATT-CTATTTATTAAGCCTATAATATTTCTTTT-AATTATTCCATGGGTTTTACCCATA
ATCCTTTCTTTAATTAGCCACATTCATTTAAACATTCTATTT-AATCCCACAATCCTTCCT-----------------TT
AATTAGCTCATTCACTTAATTAGCTCGTCCTAAACATGAGGAACGCTCTCCTTTGTTTTAACCGT--------TTGTCGG
TTGATTCCTGGGGCCGCTCATATATTTACCGGTGGGAATCATTGTAAAAGAGCGAGGTGGGATTAGAAAACATGAAAGAT
GCATAGCTCATTGGTTGTTACACCATAGATCCAGACAGGAGGTCCTCTGTTTAATTCCCACAATGTTGATTTATTTTGAC
-
>chr4A_1634
--------------------------------------------------------------------------------
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-------ATTCAATACGAAGAACATGTTGCAACGCAATATCCATCTACAAAATGAACATAAAAAATAGGATGCAATTTGG
C-ACGTTCATA-TTTTTCTCAGCCGGGCATAATCTCCCACTAATTCCATTTAAGTATAATCAGTCTACTAATTACCATAA
TGTCCTCACCCGTTT--GTCGAGAATCAAATCCTTCG-GT--TTTTT--AAATGCAAATCCTTCCCTTTCTAATTTAATA
GCCCCACCACATCGAAGCCTACGGATCCGTCCTATTAACT-ATCCTACT--TTTTTACCTC-AAATATTTCCTTTGATTA
A--CCCCATCAATTTGAATATATT-CTATTTATTAAGCCCACAATTTTTCTTTT-AGTTATTCCACC-GGTTTACCCATA
ATCATTTATTTAATTAGTCAGATACATTTAAATATTCTATTT-AAGCCCACAATCCTTTCT-----------------TT
AATTAGCTC-----------------GCCCTAAACAAGAGGTCTACTCTTCTTTGTTTTAACTGT--------TTGTTGG
TTGATTCCTGGAGCCGCTCAAATATTTACTGATTGGAATCATTGTAAAAGAGCGAGTTGGGATTAGTAAATGTGAAAGAT
GCATTGCTCATTGGTTGTTACGTTGAAGAGCCGGACAGTAGGTCCTCTATTCAACTTCCACAATGTTGGTTTATTTTGAC
C
>SNPs
--------------S--------S---------------SS------------------------------S--S-----
-S------SSSSS-S---------------S--S--------------------------S-------------------
S-------------------------------S------S----------------------S-------S----S----
-------------------S----S----------S-------S-----S----------------------------S-
-------S-------S----------------------------------------S--S-S------------------
S------------------S--------------S----------SS------------SSS-----------------S
---------SSS---S-----SS--S-SS-----S-----------S----S----S---S-----------SS------
-SS------------S---S---------S-----S--------------------------------------------
-S-------S------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-S--------
S-S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-------S--------------------------------------------S---------------
--------------------------------------------------------------------S--S--S-----
-S------------SS--------S--------S-----------S------------------------------S---
-------------------------------------S-------S---S--SSS-------------------------
---------------------------------------------------S--------------------------SS
--S-----------------------------S-----------------------------------------------
---------------------------------------------------------------SS-----S---------
----SS-----------S-------------S------S-------S------S--S----S------------------
----------S-------S--------------S--S----------S---S-------SSSSSSSSSSSS---------
----S----SSS------SS-S-SSS-------------------------SSSSSSSSSSSSSSSSSSSSSS-------
--------------------------------------------------------------------------------
--------S--------------------------S-----S----------------------SS--------------
-------------------------------------S--SS--------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S--------------------------S--------------
---S----------------------------------------------------------------------------
-
>forward_686
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--------------------------TACTCCCTCCGTCCGGAAAT----------------------------------
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-
>reverse_2359
--------------------------------------------------------------------------------
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--------------------------------------CCATTGCAAAAGAGCGAGGT----------------------
--------------------------------------------------------------------------------
-
