>input_sequence_84457
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---------------------------------ATGCTGATGCTAAGGGCAGCGCCGATGTCCTACGCGAAGGTGGACAA
GGTGGACGCCGAAGAGGCGCGGCACTGGAAGGCGCAGTTCCTGATCCACAAGGCGCTCGAGACGGGGCCGACTAGGCGGC
CGCCGGCGGCGGCGGAATTTGCGAGGGCTGGCGGGTGCAGGGTTGTCAGGGCGGTGAGGATCGGCATCCGGCTCAAGAGG
CTCAGGATCGCCGTCCGGAGCTTCAGGCTGCGCGTCTGCCGGAGCGTCCTCAAGCACCTCAAGAATCTCCGGAGGCTCGG
GTCTCCTCGTTCTTGA----------------------------------------------------------------
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>chr2D_1_TraesCS2D01G228100
TTCAAGATGCAATGAACATGGCATAAACTTTCACACAAACAAGTTGATGAATAAAAGTTCATGACCACAAGTTCAAATTC
ATGTCCACAAGTTCATCCAACCAAGTTCAAAATGCAAACCAAGTTCATGACACAAACGAAAGACACATCCAGCCTCGTCC
TCGTCTTCGTCCTCATCTTCCTCCGATTCATCCGACTCCTCCGAAGACGATTTTCCCTCCTCC---TCCTCATCATTGTC
GCGCACCGCATCACGTGAAGCTCGGACGGTGTTGGCAAGATCTTCAACGGCATCATCATGGGAAGGGGGTGTGAGGCACA
CCGGAAGACATTCCGCCCATGACGGCCGGAGGTGCACC-ATGCCTCCCATGAGAGACGCAAAACTCATGTCTCCCATGCC
GGTGT---------------------------------------------------------------------------
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-------------------------------------------------------------TGGAGGGGTTGCGGCTGTA
GGATGGGGTGAGGGGGGTGCCGGCGCGTGCGTCCATCGGGTCCAGTTCGCCGGCGCCGGCGCGCGCGGGGCGAAGGTGGC
GCGGAGGAGAGAGTGTGACGCGAGCGCTCGTGTGTGCCGCGCGCGGAAGCGGGCGCCCCAAATACACAGCGTGTGTTGGC
GATTTGGACCGCGCGCCCAACTCAATAT--CGCGCGCACGGTTATTGCGTGCCCGCTGGAGCCACTCTATCGATTGCGCG
CGCGCTAAAATGGACAAATTTGCGGCGCGGCGCTTGTTTAGCGCGGCTGTTAGAGATGCTCTTATACACCTAGATGGAGG
AAGTAAATAAATAGTCATAAACATTTACACGGCCTGCCCAACTTATTA----GTGATCTCATCAATAATGCCATTGAAAA
CATAGAGCCAGATGTAGAACCGGCCTGC-----CCGCCTGAGGCT--CGCTGCCGTCGCCTGCCTATATAACACAAGACA
GGCGCACACGTCCCTTGCCAGCTTCCAGATACCAACACAGAAGAAGCTCATACACAAAATCCTCTCTTCTTCTTCCTCGT
TGGCTCGTCGCTGCAGCGCCATCATTCCCCAAGATGCTGATGCTAAGGGCAGCGCCGATGTCCTACGCGAAGGTGGACAA
GGTGGACGCCGAAGAGGCGCGGCACTGGAAGGCGCAGTTCCTGATCCACAAGGCGCTCGAGACGGGGCCGACTAGGCGGC
CGCCGGCGGCGGCGGAATTTGCGAGGGCTGGCGGGTGCAGGGTTGTCAGGGCGGTGAGGATCGGCATCCGGCTCAAGAGG
CTCAGGATCGCCGTCCGGAGCTTCAGGCTGCGCGTCTGCCGGAGCGTCCTCAAGCACCTCAAGAATCTCCGGAGGCTCGG
GTCTCCTCGTTCTTGATCCCCTCGATCTCCTCCTTCTGAAAGAGTTTTTTAT--GTGTCAGGGAGACTAAGCTGCCTTCT
ATTTATATCAT-CGCAATAGCTAACAACAACTTCTGCCCTTGATATGCCGAGAAGATTTGGGCGCGCGCGTGCGTTTGTG
GATGCATAGTATAGTACAGTATGTAATCTGTAAATGGAGCAGATCAGCAATGCTTGCTCCTGTTTCAGGCTTCCTTTTTC
TCTGGGATCCTATCCTATCTTGTTGGCCACTGACAGCTGATGAAACTCTTCAGTTATGTATATGCAGCATATCCTTGTTG
AATTGTTGATTGAGTCATTGAGATGCTAAATCCTTTACTGCTCCGATGAGCTTTGGATCTTATGTTTCGAGAAGTAAGTC
GGGAATCCTTTAAAGAAAAATG---TTTTGCTTTTGTTCTGCAAGATCTCTAGAGAAAACGGCTACAGCAATCCACGATT
AGCTTACCTACTACCTGCTGGGTAGGAGGACATGTGTTTTGCGTCAGCCCGGCTACAGCAAAACGAAAAGAGAGTGACGA
AAGGTCATGCATTGTTAATAGTCGATGAGAAAGTAGATTTGGGATCTAATCTAACTCATGCTGCCAGTTTGTCCCTA-GT
CGAGTATGAAGTTGACCTGCATGTGCAGGAGAGCTTGCATCCCTATTCGCGAAAATTCCTTTACAAAACCGCGATACACT
GCTTTACAAACATTAAATTCTGGTTTGGAAAACGACAACTGGAGCTTCGTTTCCTTTCCTTTGCGGTTAGCTGATAACTA
GTGAAAAATGAATTGCAAAAAACCAAAGTCGACCAAGATTTT--TTTTATCTGTAAATCGACGGGGCAAGCAAAATGGAC
TAACAAATACTGCATGAAAAACTGTCATCGATACTCG-------------------GAAAATGAGCTGAACATACCACGT
AAACGGGCGCTTGATTTAGAATCATAAGTCGTAGTTGAATACATTGTTGACATATGGCATCAAGGTGCTAATTTTACTCA
CAGA
>chr7D_1
TTCAAAATGCAATGACCATGGCATATAATTTCACACAAACAAGTTGATGAATAAAAGTTCATGCCCACAAGTTCAAATTC
ATGCCCACAAGTTCATCCAACCAAGTTCAAAATGCAAACCAAGTTCATGACACAAACGAAAGACACATCAAGCCTCGTCC
TCGTCTTCGTCCTCATCTTCCTCCGATTCATCCGACTCCTCCGAAGACGATTCTTCCTCCTCC---TCCTCAT---TGTC
GCGCACCGCATCACGTGAAGCTCGGACGGTGTTGGCAAGATCTTGAACGGCATCTTCATGGGAAGGT-GTGTGAGGCACA
CCGGAAGACATTCCGCCCATGGCGGCCGGAGGTGCACCCATGCCTCCCATGAGAGACGCAAAACTCATGCCTCCCATGCC
GGTGCGTGCGTCCGTTGGGTCCAGTTC-----------------------------------------------------
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------------------GCCGGCGCGTGCGTCCATCAGGTCCAGTTCGCCGGCGCCGACGCGCGCGGGGCGAAGGTGGC
ACGGAGGAGAGAGTGCGGCGTGAGCGCTCGTGTGTGTCGCGCGTGGAAGCGGGCGCCCCAAATACACAGCGCACGTTGGC
GATTCGGACCGCGCGCCCAACTCTATATGCCGCGCACGCGGTTATTGCGCGCCCGCTGGAGCCACTCCACCGATTGTGCG
CGCACTAAAACGGGCAAATTTGCGGCGCGGCGCTTGTTTAGCGCGGCTGTTGGAGATGCTCT------------------
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>chr5D_23
----------------------ATATAATTTCACACAAACAAGTTGATGAATAAAAGTTCATACCCAGAAGTTTAAATTC
ATGCCCACAAGTTCATCCAAC-AAGTTCAAAATGCAAACCAAGTTCATGACATAAACGGAAGACACATCAAGCCTCGTCC
TCCTCTTCGTCCTCATCTTCCTCCGATTCATCCGACTTCTCCGAAGACGATTCTTCCTCCTCCTCTTCCTCAT---TGTC
GCGCACTGCATCACGTGAAGCTCGGACAGTGTTGGCAAGAACTTCAACGGCATCTTCATGGAAAGGT-GTGTGAGGCACA
CCGGAAGCCATTTCGCCCATGGCGGCCGGAGGTGCACCCATGCCTCCCATGAGAGACGCAAAACTCATGCCTCCCATGCC
GGCCATGGCACCCGGAGGTGCTCCAAAGCCACCCATGCCTCCCATGGTCTCCATGGTAGCTTCAAAGCCACCCATGGCAC
CCCATGCCGCCCATGGTAGCTCCGAAGCCATCCATGCCTCCCATGGCGCCAAAGCCACCGCCAACCATGGTGCTAAGGCC
ACCGCCACCCATTGCGCGAATCATGGCTCTTTTTTGAATCAAGACTTCTTCACGGGCAAGATTGACATACTCCTTTTGCG
CCTCATTGAGGATAGATGTGTCCAAAAATAACAAGTGCTTCTCCCAATCCAACAATCAAGTTCGCTCCTCATTGCTCACC
TTCCTCTCCTCCAAAGCCACCTTCCTCTTCTCGGCCGCCACCCTCCTCTCCTCGGTCGCGGCATCTTGGTTCCTTGCCAT
TTTCCTCACCTTGTTGGCTTCTTTTCTTGCCTTCACAATAGCTTCCATAGCATTTTTGAGCTCATCATCTCCTTTCCTCT
TCTTCTTTTCTTTTGCGTCTTTCTTGCACCCATCCGGTCGTTTTGGCTTCGAGTATGAAACCGAGTTGGATGTGGGGCTT
CTCTTGCCGTCATCACTTGATGCATCCTCCTCATCATCATCATCCAGCTCAATTGTTCGCTTGCGCTTGTTGCTCAAATC
CAAATCATCCAAATCATCATGCTTCTTTCATTTCTCATCATCCTTCAACACGTCATAGCAATGAGGCAAGGTAAATGGCC
ATCCTTTCTTGATCTTCCCCTTCTTGGTCCTTTTCTCCTCTCCTTTGAACAAGTTTTGTGCAATGTTGTACTACATGAAA
ATAAAACAAGTTAGCACTCAAACACCAACAACAAGTATGATGAACATGGATGAAATGAAACTTACTCTATCGTCCTCATT
AGTGCCACTTGGCTTCAAATTGTCAACCGCCTTTTGTGCGGCCGCCCACTTTTGACAATCCTTGTTGATTGTCGACCACC
AGGACTGAAGAGATCGGTCGGAGCGGTCAATTCCACTCATGTTGCGAACATCAAAGTGTTCCTTCATCCGAAGCCAATAA
GCATCTCTACTTTGATCACCTCCAACGGATGGATCCCTTGACATTTGCAACCAAGTATTGCATAGTAAGATTTCTTCGGC
GTTGGTGTAATTGCCCGCTCTCCCTTTCGGTGCGTCGACAATGCCCTCACCATCCTCGTCCATCTCGAACTCATGGTCAT
CGAAGTGCATGTCATTGGTTTGAGACCAATGCGAATTGTTGGAGCCAACACCCATAGTTGACATGTATGCATCATCGTTG
AGACTACAAAGTATATAGAACAATGCAAATAAGCTATCTATATATATGCATTCAAAAAATAACAAGAAAAAACAAGTTGG
GGAAATTATCTACCTTTGGGGAATATCCTCGAACACATTGTGTGCGTCGGCCGCCGGCTCAACAAGTGAGCTCGTCGGCG
CTTCGGTAGCCGTCGCGCCCGTCACACGCCCTGCAAGCTTCTTCCTCGATGCCTTCGAGATGCCGGAGCCGTCTGCCGCC
TTGTTCTTCTTCGCGGATGTCTTGCCCTTCTTCGGTCGCGCCGCATTTGGGAGCTTCGAGGGGGGCATGTGGTTTCATCA
CGGCGGGCGCCGGCGCGACGCCACCCGCAGCCAAGGTCATCCGTGGCGGCATGAAGAGGCCGCACGCGAGGCCGATGCTC
AGAGGAGCTCCGGCGGAGGCGAGGCCAACACTCCCCGCGCTAGGGTTTGCGGCGGCGGCGGTGGAGGGGTCGCGGCTGTA
GGATGGAGTGAGGGGGT-GCCGACGCGTGCGTCCATCGGGTCCAGTTCGCCGGCGCCGGCGCGTGCGGGGCGAAGGTGGC
GCGGAGGAGAGAGTGCGGCGCGAGCGCTCGCGTGTGCCGCGCGCGGAAGCGGGCGCCCCAAATACACAGCGCGCGTTGGC
AATTCGAACCACGCGCCCAACTCTATATGCCGCG--CGCGATTATTGCGCGCCCGCTGGAGCCACTCTATCAATTGCGCC
CGCGCTAAAATGGGCAAATTTGCGGCGCGGTGCTTGTTTAGCACGACTGTTGGAGATGCTCTTA----------------
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>chr2A_739
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AAGTAGATAAATAGTCATAAACATTGACACGGCCTGCCCAACTAATACTCTGGTGATCTCATCAATAATGCCATTGTAAA
CATAAAGCCAGATGTAGAACCGGCCTGCTTGCCCCGCCTGAGGCCTGCGCTGCCGTCGCCTGCCTATATAACAGAGGACA
GGCGCACACGTCCCATGCCAGCTTCCAGATACCAGCACAGAAGAAGCTCATACACAAAATCCTCTCTTCTTCCTCCTCGT
TGGCTCGTCTCTGCAGCGCCATCATTCCCCAAGATGTTGATGCTAAGGGCAGCGCCGATGTCCTACGCCAAGGTGGACAA
GGTGGACGCCGAGGAGGCGCGGCACTGGAAGGCGCAGTTCCTGATCCACAAGGCGCTCGAGACGGGGCCGACTAGGCGGC
CGCCGGCGGCGGCGCCATTGGCGAGGGCTGGCGGCTGCAGGGTCGTCAGGGCGGTGAGGATCGGCATCCGGCTCAAGAGG
CTCAGGATCGCCGTCCGGAGCTTCAGGCTGCGCGTCTGCCGGAGCGTCCTCAAGCACCTCAAGAATCTCAGGAGGCTCGG
GTCTCCTCGTTCTTGATCCCCTCGATCTCCTCCTTCTGAAAGAGTTTTTTAT--GTGTCAGGGAAACTAAGCTGCCTTCT
ACTTCTATCATACGCAATAGCTAACAACAACTTCTGCCCTTGATATGCCGAGAAGATTTGGGCGCGCGCGCGTGTGTGTG
GATGCATAGTATAGTACAGTATGTAATCTGTAAATGGAGCAGATCAGCAATGTTGGCTCCTGTTTCAGGCTTCCTTTTTC
TCTGGGATCCTATCCTATCTTGTTGGTCACTGACAGCTGATGAAACTCTTCAGTTATGTATATGCAGCATATCCGTGTTG
AATTGTTGA----GTCATTGAGATGCTAAATCCACTGCTGCACCGATGAGTTTTGGATCTTATGTTTCGAGAAGTAAGTC
CGGAATCCTTTTAATT-TTTTTTCCTTTTGTTTTTGTTCTGCAAGATCTCTAGAGAAAACGGCTACAGCAATCCACGATT
AGCTTACCTACCACCTGCTGGGTAGGAGGACATGTGTTTTGCGTCAGCCCGGCTACAGCAAAACGAAAAGAGAGTGACGA
AAGGTCATGCATTGTTAATGGTGGATGAGAAAGTAGATTTGGGATCTAA-----CTCATGCTGCCAGTTTGTCCTTA-GT
CGAGTATGAAGTTGAACTGCATGTGCAGGGGTGCTTGCGTCCCTATTCGCGAAAATTCCTTTACAAAACCGCGATACACT
GCTTTACAAACATTAAAATTTGGTTTGGAAAACAACAACTGGAGCTTCGTTTCCTTTCCTTTGCGGTTAGCTAATAGGTA
GCGAAAAATGAGTTGCAAAAAACCAAAGACGATCAAGATTTTTCTG--ATCTGTAAATCGACGGGGCAAGCAAAATGGAC
TAACAAACACTGCATGAAAAGCTGTCATCGATACTCTGAGGTTGAAAGAAACGCTTGAAAATAAGCTGAACCTACCAAGT
AAACGAGCGCTTGAATTAGAATCGTAAGTCGTAGTCGAATACATTGCTGACATATGGCATCAAGCTGCTAATTTTACTCA
CAGA
>chr2B_739
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AAGTAGATAAATAGTCATAAACATT-ACACGGCCTGCCCAACTAATACTCTGGTGATCTCATCAATAATGCCATTGAAAA
CATAGAGCCAGATGTAGAACCGGCCTGCTTGCACCGCCTGAGGCCTGCGCTGCCGTCGCCTGCCTATATAACAGAGGACA
GGCGCACACGTCCCATGCCAGCTTCCAGATACCAACACAGAAGAAGCTCATACACAAAATCCTCTCTTCTTCCTC---GT
TGGCTCGTCGCTGCAGCGCCATCATTCCCCAAGATGCTGATGCTAAGGGCAGCGCCGATGTCCTACGCGAAGGTGGACAA
GGTGGACGCCGAAGAGGCGCGACACTGGAAGGCGCAGTTCCTGATCCACAAGGCGCTCGAGACGGGGCCGACAAGGCGGC
CGCCGCCGCCGGCGGCATTTGCGAAGGCTGGCGGGTGCAGGGTCGTCAGGGCGGTGAGGATCGGCATCCGGCTCAAGAGG
CTCAGGATCGCCGTCCGGAGCTTCAGGCTCCGCGTCTGCCGGAGCGTCCTCAAGCACCTCAGAAATCTCAGGAGGCTCGG
GTCTCCCCGTTCTTGATCCTCTCGATCTCCTCCTTCTGAAAGAGTTTTTTTTACGTATCAGGGAAACTAATCTGCCTTCT
ACTTGTATCAT-CGCAATAGCTAACAACAACTTCTGCCCTTGATATGCCGAGAAGATTTGG--GCGCGCGCGTGTGTGTG
GATGCATAGTAT-----AGTATGTAATCTGTAAATGGAGCAGATCAGCAATGTTTGCTCCTGTTTCAGGCTTCCTTTTTC
TCTGGGATCCTATCCTATCTTGTTGCTCACTGACAGCTGATGAAACTCTGCAGTTATGTATATGCAGCATATCCTTGTTG
AATTGTTGATTGAGTCATTGAGATGCTAAATCCTTTGCTGCACCGATGAGTTTTGGATCTAATGTTTCGAGAATTAAGTC
AGAAATCCTTTTATTTATTTTTTCCTTTTGCTTTTGTTCTTCAAGATCTCTAGAGAAAACGGCTACAGCAATCCACGATT
AGCTTACCTACCACCTGCTGGGTAGGAGGACATGTGTTTTGCGTCAGCCCGGCTACAGCAAAACGAAAAGAGAGTGACGA
AAGGTCATGCATTGTTAATGGTGGATGAGAAAGTAGATTTGGGATCTAA-----CTCATGCTGCCAGTCTGTCCTTTGGT
CCAGTATGAAGTTGAACTGCATGTGCAGGGGAGCTTGCGCCCCTATTCGCGAAAATTCCTTTACAAAACCGCGATACACT
GCTTTACAAACATTAAAATCTGGTTTGGAAAACAACAGCTGGAGCTTCGTTTCCTTTCCTTTGCGGTTAGCTGATAGCTA
GTGAAAAATGATTTGCAAAAAACCAAAGTCGGCCAAGATTTTTCTTTAATCTGTGAATCGACGGGGCAAGCAAAATGGAC
TAACAAACACTGCATGAAAAACTGTCATAGATACTCGGAGGTCGAAAGAAACGCTTGAAAATGAGCAGAACATACCAAGT
AAACGGGCGCTTGATTTAGAATCATAAGTCGTAGTTGAATACATTGTTGACATATGGCATCAAGCTGCTAATTTTACTCA
CAGA
>SNPs
-----S---------S---------S-S-----------------------------------S----------------
---S-----------------------------------------------------------------S----------
----------------------------------------------------S-S------------------SSS----
------------------------------------------------------S-----------SS------------
---------------------S-----------------------------------------------S----------
----S---------------------------------------------------------------------------
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----------------------------------------------------------------------S---------
------S---------SS--------------------------------------------------------------
---------------S-S-----------------------------------------------------S-S------
----S------------------S-----------S-S-----------S------------------------------
-------------S-------------------------------------S------------SSSSSSSSSSSSSSSS
-----S-------------------S-----------------S--SS--------------------------------
--------------------------------------------S----------------------------S-S----
--------------S---------------------------------------------------------S-------
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---------------S---------------------------S------------------------------------
---------------------------------------------------------------------S----------
----------------------------------------------------------------S---------------
-S--S-----------------------------------------------------------------S-S--S----
----------------------------------------------------S---------------------------
--------------------------S-----------------------------------------------------
------------------------------------S----S--------S-----------------------------
S----------S--SS-SSS-S----------------------------------------------------------
-----------S--------------------------------------------------------------------
-------------------S--S--------------------------SSSSS--------------------S-----
---------------S-------------S--------S-----------------------------------------
-----------------S---------------S------------------------------------------S---
-----------S-----------------------------------S--------------------------------
-------S---------------------------------------------------------------------S--
----------------------------------------------------------------S---------------
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>forward_342
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--GGAAGACATTCCGCCCATGA----------------------------------------------------------
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>reverse_3998
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-----------------------------------------------------------------------------CGT
AAACGGGCGCTTGATTT---------------------------------------------------------------
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