>input_sequence_84449
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----------------------------------------------------ATGGCGGAAAACTCAAGGGCCGGCAGTT
CAAGCATCCATGATCTGTTGCAGGAATTCCTAGTGCAGCAACAGCATGTCGATATGCTGTGGCATGAGACGATGGAGCGG
CGCGCCCAGGAGCGGCTCATTTTCGAACAAGAATGGAGGCAGTCGATGCAGAAGCTTGAGCAGGAGAGGCTGATGCTGGA
GCAGTCATGGATAGAGCGAGAGGAACAGCGAAGGATGAGGGAAGAAGCAAGGGCTCAGAAGAGGGATTCGCTCATGACCA
CCCTGCTGAACAAACTCTTACAAGAAGATCTATAG---------------------------------------------
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>chr2A_1_TraesCS2A01G436000
ATTTACACACGTGTGTGTTAGGCCTTCATATATATGTGTGTTTTTTTTCAGATTTTTTTGAAATGTAGAAAATATGAAAT
TCAACAAAATTCAAATTTTTCAAAACCGAGCTCCATGGAGCTCGGCCTCCAAAGACAATATCCGCCTAGTTTACTGCTAT
AAAGTTTTAAAGTGGAGCATAGAAATTTTGACATTTTGAGCCCCTTTAAAATGTGACAATTTCTATCCGCTTTAAAACTT
TATAGCAGTAAACTAGTGCTGTTCAAAATAAGCAATAAAATTAGGATAACAAAAAGTAGGGGCATCTCAGGCAAAAGGAG
TATGAAGTTGAACACTCCGGAGGAAAAATGGATGGCATTTCGGATGGTTTAATTAGGTTTATTGAGAAAGAACTAGGGAA
AATGTTGAAATTTCAGGGGATAGACATGTACTACAT-------TTTCTTCAGAGGAGGTTTGAAATTTGCATGTTTGATT
TAGAATGACACTGATTTGGGGTTTGT-TGGGTGTTGGAACCAATTTCAAGCTTTCAGGTAAAAATGTTCCATTAGGATGT
TCCTACAATGTGTCACCTAATTTCTTTCGGTATTATC-TTGTCGTGACGACATTCCACTGCACCCCTCTTGTTTGGACAC
CTTTGCTATTATAAGTTTGCTGTGTGATTGCAACTAAGATTTATAGTACC---TTCATTGTTTAGTTTATGGGGCGATAA
CTCTTTTTTTTTTCATCAGGGGAAAGAAACATCTGATCCAGAAACCGGCAGACAATGTCCCTTCTTTGAAGAATTACATG
CAGTCTTCACTGAACGTGCTAAAAATATGCAACGTCAACTCCTTCAGTCTGAATCGGGAACTTCAGTTAAAAAGAAATTA
AAGCGACCTAGCGGTGACCAGTCATCTGGGGAGTCTGATGAGAACGAATATGGCGTTGAAGTCAGCGATGATGAGAAACC
CGTGATAAGCAAAAAGCGGAAGGCTGGTGATAAGGGGCAACCATCGCAACGAATGGCGGAAAACTCAAGGGCCGGCAGTT
CAAGCATCCATGATCTGTTGCAGGAATTCCTAGTGCAGCAACAGCATGTCGATATGCTGTGGCATGAGACGATGGAGCGG
CGCGCCCAGGAGCGGCTCATTTTCGAACAAGAATGGAGGCAGTCGATGCAGAAGCTTGAGCAGGAGAGGCTGATGCTGGA
GCAGTCATGGATAGAGCGAGAGGAACAGCGAAGGATGAGGGAAGAAGCAAGGGCTCAGAAGAGGGATTCGCTCATGACCA
CCCTGCTGAACAAACTCTTACAAGAAGATCTATAGAAGACGAAGCTTCTTTGTCAATGGGTAGATAATGTACTAGACCTC
ATTTTTCTTACCATGTTTCATCGATTCTTTTTAGCTATTGCAACATGCTGTTGTCCAGAAGAAGATGTTTGATGTAGCTT
ATTAACTTTATAGTGCTCATTTCCAATTCTTTACCGGGGTTATATTTATATACTAATTTATTAGAGATGTAAGTATCAGA
TGCCAGATAGGTGATCTACTGATCTATGTGATTTCCGGAGACATTAGGCTTTCAGGCATCAGTCGTCTTGCGCGAATATC
ATGTGCTCTAGCATTTTCACG-----------------------------------------------------------
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-----------------------GCATTGTTCCATATGTTGTGAACTTGTAATGTAGACTGGATTT-ATGTTCTGCTACA
ATGGTGAATTTGTGATGCATGTGCCATGTAAACCGATTGGAATTTGTTTGCTTTGAGCCCACAAGAGACCTTGCCTGATA
GAACTAATGCCCAAAACCAGGGCACTGTCAAGATTGTGGCGAAAAAAGTGGCATTTAAAAAGTTAAATTCATTGGTCTGG
GCACTCCCTTTCAGCAGACTTATCCCAGCTTTTTTGTGAGCTAGATGTGACTGTTGAAACACATTACT------------
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----------------------------------------------------------------TTCTTTTCATTCTTTT
CTTCAGATTTAAACATGAATTTCAAATGAAGGATGGTTCAGTTAGGGCCTCCTCTTGATGTAGAATTTTGTAGGAATGTA
ATCTTTTAAGAAACTTTCCAATGAGAGCCGTTCAAT-----CGCATCGTGGTTGTCAAATTCCCATATAATATGTTCCTT
TGATTTCGATTTCCGTATTTACCTAGATCCTCTTTTTTTTTTTGCGGGGGACCTAGATCCTCTTTGACTT-AAAGATCAT
CACAATGCTCTGAAAGAAAGCAAATGAATCAAGTGGCACGTCCGTTCGAATCCATTACGATTAGAAAACCTAATACATTC
GAAAACAAATGAATTGTAGCAAGA----------------------------AAATCGAGTGCGAAGGAATTTCTTTCTT
AGAGAAAATTCTTGAGGATTCAAATCCT
>chr2D_145
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----------------------------------------------------------------CCTAGTTTACTGCTAT
AAAGTTTTAAAGTGGAGCATATAAATTTTGACATTTTGAGCCACTTTAAAATGTGACAATTTCTATTCACTTTAAAACTT
TATAGCAGTAAACTAGTGCTGTTCAAAATAGGCGATTAAATTAGGATAACAAAAGGTAGGGGCATCTCAGGCAAAAGGAG
AATGAAGTTGTACACTCCGGAGGAAAAATGGATGGCATTTCGGATGGTTTAATTAGGTTTATTGAGAAAGAACCAGGGCA
AATTTTGAAATTTCAGGGGATAGACATGTACTGTACTACATTATTTTTTCAGAGGAGGTTTGAAATTTCCATGTTAGGTT
TAGAATGACGCTGATTTGGGGTTTGC-TGGGTGTTGGAACCAGTTTCAAGCTTTCAGGTAAAATGTA-CCATTAGGATGT
TCCTACAATGTGTCGCCTAATTTGTTTCTGTACTATCTTCGTGGTGACGACATTCCACTACACCCCTCTTGTTTGGACAC
CTTTGCTATTATAAGTTTGCTGTGTGATTGCAACTAGGATTTATAGTACT---TTCATTGTTTAGTCTATGGGGCAATAA
CACTTTTCTTTTTCATCAGGGGAAAGAAACATCTGACCCAGAAAACGGTAGACAATGTCCCTTCTTTGAAGAATTACATG
CAGTCTTCACTGAACGTGCTAGAAATATGCAACGTCAACTCCTTCAGTCTGAATCGGGAACTTCAGTTAAAAAGAAATTA
AAGCGACCTAGCGGTGACCGGTCATCTGGGGAGTCTGATGACAACGAATATGGCGTTGAAGTCAGCGATGATGAGAAACC
CGTGATAAGCAAAAAGCGGAAGGCTGGTGATAAGGGGCAACCATCGCAACGAATGGCGGAAAACTCAAGGACCGGCAGTT
CAAGCATCCATGATCTGTTACAGGAATTCCTAGTGCAGCAACAGCATGTAGATATGCTGTGGCATGAGACGATGGAGCGG
CGCGCCCAGGAGCGGCTCATTTTCGAACAAGAATGGAGGCAGTCGATGCAGAAGCTGGAGCAGGAGAGGCTGATGCTGGA
GCAGTCATGGATAGAGCGAGAGGAACAGCGAAGGATGAGGGAAGAAGCAAGAGCTCAGAAGAGGGATTCGCTCATGACCA
CCCTGTTGAACAAACTCTTACAAGAAGATCTATAGAAGGCGAAGCTTCTTCATCGACGGGTAGATAATGTACTAGACATC
ATTTTTCTTACCATGTTTCATCGATTCTTTTTAGCTCTTGCAACATGCCGTTTGTCC--AGAAGATGTTTGATGTAGCTT
ATTAACTTTATAGGGCTCATTTCTAATTTTTTACCGGGGTTATATTTATATACTAATTTATTAGAGATGTAAGTATCAGA
TGCCAGATAGGTGATCTACTGATCTATGTGATTTTCAGAGACATTAGGCTTTCAGGCATCAGTCGTCTTGCATAAATATC
ATGTGCCCTAGCATTTTCATG-----------------------------------------------------------
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-----------------------GCATTGTTCCTTATGTTGTGAACTTGTAATGTAGACTGGATTTTATGTTCTACTACA
ATGGTGAATTTGTGATGCATGTGCCATGTAAACCGATTGGAACTTATTTGGTTTGAGCCCACAAGAGACCTTGCCTGATA
GAACCAATGCCCAAAACCAGGGCACTGCCAAGATTGCGGCAAAAAAAGCGGCATTCAAAAAGTTAAATTCATTGGGCTCG
GCACTCCCTTTTTGCGGAGTTATCCCAGCTTTTTTGTGAGCTAAATGTGACTGTTGAAACACATTACT------------
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----------------------------------------------------------------TTCTTTTCATTCTTTT
CTTCAGATTTAAACATAAATATCAAACGAAGGTAT------------CCTCCTCTTGATGTATAATTTTGTAGGAATGTA
ATCTTTTAAGAAACTTTCTGATGAGAGCCGTTCAAT-----CG-----TGGTTGTCAAATTCATGTATAATACATTCCTT
TGATCTTGATTCCGTAGCA-------------------------------ACCTAGATCCTCTTTGACTCAAAAGATTAT
CACAATGTAATGAAAGAAAGCAAACGAATGAAGTGGCACATCCGTTCTAATCCAATATGATAAGAAAACCTAATACATTC
GAAAACAAATGAATTGTAGCAAGAGGTCTGAGTGCATGTAAACTTTCCTCTAAAATCGAGTGCAAAGGAATTTCTTTCTT
AGAGAAAATTCTTAAGGATTCGAATCCT
>chr2B_328
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-------TTGTACACCCCGGGGGAAATATGGATGGCATTTCAGATGGTTTAATTAGGTTTATTGAGAAAGAACCAGGGCA
AATTTTGAAATTTCAGGGGATAGACATGTACTACAT-------TTTTTTCAGAGGAGGTTTGAAATTTCCATGTTAGGTT
TAGAATGACGCTGATTTTGGGTTTGTTTGTGTGTTGGAACCAATTTCAAGTTTTCAGGTAAAAATGGTCCATTGGGATGT
TCCTACAATGTGTCGCCTAATTTGTTTCCGTATTATCTTTGTCGTGACGACATTCCACTACACCCCTCTTTTTTGGTCAT
CTTTGCGATTATAAGTTTGCTGTGTGATTGCAACTAAGATTTATAGTACTACCTTCATTGCTTAGTTTATGGGGCAATAA
CTCTTTCTTTTTTCATCAGGGGAAAGAAACATCTGATCCAGAAAATGGTAGACAGTGTCCCTTCTTTGAAGAATTACATG
CAGTCTTCACTGAACGTGCTAGAAATATGCAACGTCAACTCCTTCAGTCTGAATCGGGAACTTCAGTTAAAAAGAAATTA
AAGCGACCTAGCGGTGACCGGTCATCTGGGGAGTCTGATGACAATGAATATGGCGTTGAAGTCAGCGATGATGAGAAACC
CATGATAAGCAAAAAGCGGAAGGCCAGTGATAAGGGGCAACCATCGCAACGAATGGCGGAAAACTCAAGGACCGGCAGTT
CAAGCATCCATGATCTGTTACAGGAATTCCTAGTGCAGCAACAGCATGTCGATATGCTGTGGCATGAGACGATGGAGCGG
CGCGCCCAGGAGCGGCTCATTTTCGAACAAGAATGGAGGCAGTCGATGCAGAAGCTTGAGCAGGAGAGGCTGATGCTGGA
GCAGTCATGGATAGAGCGTGAGGAACAGCGAAGGATGAGAGAAGAAGCAAGAGCTCAGAAAAGGGATTCGCTCATGACCA
CCCTGCTGAACAAACTCTTACAAGAAGATCTATAGAAGGCGAAGCTTCTTCGTCAACGGGTAGATAATGTACTAGACATC
ATTTTTCTTACCATGGTTCATCGATTCTTTTTAGCTATTGTAACATGCTGTTGTCCAGAAGATGATGTTTGATGCAGCTT
ATTAACTTTATAGGGCTCATTTGCAATTCTTTACCGGGGTTATATTTATATACTAATTTATTAGAGATGTAAGTATAAG-
----AGATAGGTGATCTACTGATCTATGTGATTTTCAGAGACATTAGACTTTCAGGCATCAGTCGTCTTGCGTGAATATC
ATGTGCTCTAACATTTTCATGGCATTGTTCCTTTTTTTTTGAACAGTGAAAGGGCCCAAGGCCCATACTTCATTGGATAA
GCATCAAAGCATAGATTACAACAGGACCCAACAGAAAAAGAAAACAACAAGTAAGTCCCTGACTTTTACATAGAGGACCC
CAAACTGAGAGCAAGAAACGTGATCGGGTCCTTGGCAGCTGCCGCCCGGACTGAACCTCGCTGCCGTCGGGGACGAACCA
CTTGGTGCGACGAAATCGCCATAGAAGCATAGCATGCTCCGCATGGCTTCCGAGTTGCAGTTGAAACTGCCTCCCATAAG
GCACGCAAGCCGGGAGGAATAGAGTCGGCCGCCATTCGACCAGAAGAAGCAGAGCACCGGTAAAGACCGGCAGCCAGCCA
AGGGCGCCGTAGCTCCATCAAGGAATCCTCTGCTGATAAGCTCGAACTCGATCTGAGGGCTTCAGATTTCTGCATCTTCG
TTGCTCCTCATCCACCCCCATGATGGCCTGAAAAAGCAAGCAACAGCAGATGGTTGCCCTCCAGATCAGGGAAGATAACA
GGCTTATTGGAGAGGGAGAGCTCCTGCCAGATCCACTCCTATCTGCTCCCGTCCTCCATGGACGGCAAGCTCGGAAGGAA
CCCGGCGAGCACCGAACGCTGCCTGGACGCGTCGATGGGGAGCTCGAGAACGGCATTAACGCCAGACGCCCCGAAGGCAA
GACTCTCTCGACTACTACATTTACTACTACTATATACAGAGGGGGGCCAACCGCCTATCCCATCCTCACGCCGGACGGCA
GAGCCGCCGGAGAGAAAGAGGAAAAGGGGCAAAGTCGGAGCAAGCAAGACGACTCTCAACCTGAGCTACTCAGTGCCGGC
AAAACAGTATGTGCGTGGTTGCGGCATTGTTCCTTATGTTGTGAACTTATAATGCAGACTGGA-TTTATGTTCTACTACA
ATGGTGAATTTGTGAT---------------------TGGAACTTGTTTGGTTTGAGCCCACAAGAGACCTTGCCTGATA
GAAGTAATGCCCAAAACCAGGGCACTGCCAAGATCGTGGCAAAAAAAGCGGCATTCAAAAAGTTAAATTCATTGGTCTCG
GCACTCCCTTTCAGCGGAGTTATCCCAGCTTTTTTGTGAGCTAAATGTGACTGTTGAAACACATTACTACCTCTGTCCTG
GTTTATTGGTCCCCATAGTATTTTGTACCAAATTTTGACCATAGATTTAACTAAGTAAAAAATAATGCATGTCAGCAAAA
TGATATCCCTCAATTCGTATTTGAACATAGTTTTGAGAGATATTATTTTTAATTACATGCATTAACATTTCGTTAGTTAA
ATTTAATATCAAAATTTTGCATAAAATACTAAGGGGACTAATAAACCAGGACGAAGGTAGTACTTTCTTTTCATTCTTTT
CTTCAGATTTAAACATGAATTTCAAACGAA-GATAGTTCAGGTAGGGCCACCTCTTGATTTAGAATTTTGTAGGAATGTA
ATCTTTTAAGAAACTTGCTGCTGAGAACCGTTCAATTGGATCG-----TGGTTGTCAAATTCCTACATAATACATTCCTT
TGATCTCGATTCC---------------------------------------------CCTCTTTGACTCGAAAGATTAT
CACAATGTACTGAAAGAAAGCAAACGAATCAAGCAGCATGTCCATTCAAATCCAATATGATTAGAAAACCTAATACATTC
GAAAACAAATGAATTGTAGCAAGA--------------------------------------------------------
----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
---------------------S--------------------S-----------------------S-S-----------
------------------------------S--S--S-----------------S-------------------------
S---------S--------------------------------------------------------------S----S-
---S------------------------------------------S---------------------S------S-S--
---------S--------------------------------------------------------S-------------
--------------S--------S----S------------------------------S--------------------
-------------------------------------------------S-------------------------S----
--------------------------------------------S---S-------------------------------
---------------------S----------------------------------------------------------
-------------------S---------------------S--------------------------------------
----------------------------------------------------------------------S---------
-------------------S------------------------------------------------------------
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---------------------------------------------------S----------------------------
--------------------------------------S-----------S-----S--------------------S--
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-------------S------------------------------------------------------------------
----------------------------------S-S-----------------------------------S-------
-------------------S------------------------------------------------------------
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---------------------------------S----------------------------------------S-----
------------------------------------------S-------S-----------------------------
---------------------------S------------S-------S------S----------------------S-
---------------S--S------------------------S------------------------------------
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--------------------------S-------S------S--------------------------------------
------------------SS-----------------------SSSSS---------------S--------SS------
----S------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-------S--
-------SS---------------S----------------------S------S--S----------------------
---------------------------------------------------------------S----------------
-------------S-------S------
>forward_28
--------ACGTGTGTGTTAGGCCTTCA----------------------------------------------------
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>reverse_1252
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---------------------------------------------------GGCTCAGAAGAGGGATTCGC---------
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>forward_139
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---------------------------------------GCTCGGCCTCCAAAGACAAT---------------------
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>reverse_3075
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----------------------------------GGTTCAGTTAGGGCCTCCTC--------------------------
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